These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1596 fasta sequence [TGTCCAGTCCGGCGTCCGCCGCCGATGGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCCGCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCACCAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGGCGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGCCTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGCCGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGGGATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAAGGCCACGTGCGTGGACACGGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCACCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCTAGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGGAATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGAAGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCGATGATGAGTTGTGGTATCGCGCTGTTGAGGTATGATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAAAAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTTCCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGATGACAAGACAGTTCTTCTGGTAAGGAATTTTTACATATCGTAGATAAAATAAACTTATATGACCATTAGGTAACATCAGTGATACATTCTTTTCCTTCCTTTTTCTGTAAGATAACCATACCGATCAAGCTTATTTATGTGTTAACCATTTGCAGGTCTTAGAGCGAATCCATGAAGTTATTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGGTATTAGGAAATATGAGTTATGAGTTACTTCTTTTAATGCCCTCTTGCTCTGCTTGTTATAATATGATGATCAAAAGCTTATGTTATTAGCTAATGAAGGTGAGTTGCAACTCATGCTGTGCATATTTAGGCTGGTGGATGAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAATCACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCTTGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTATGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTAGCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGATTTC] [+] EMBL AK073594 [TGTCCAGTCCGGCGTCCGCCGCCGATGGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCCGCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCACCAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGGCGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGCCTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGCCGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGGGATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAAGGCCACGTGCGTGGACACGGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCACCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCTAGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGGAATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGAAGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCGATGATGAGTTGTGGTATCGCGCTGTTGAGGTATGATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAAAAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTTCCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGATGACAAGACAGTTCTTCTGGTAAGGAATTTTTACATATCGTAGATAAAATAAACTTATATGACCATTAGGTAACATCAGTGATACATTCTTTTCCTTCCTTTTTCTGTAAGATAACCATACCGATCAAGCTTATTTATGTGTTAACCATTTGCAGGTCTTAGAGCGAATCCATGAAGTTATTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGGTATTAGGAAATATGAGTTATGAGTTACTTCTTTTAATGCCCTCTTGCTCTGCTTGTTATAATATGATGATCAAAAGCTTATGTTATTAGCTAATGAAGGTGAGTTGCAACTCATGCTGTGCATATTTAGGCTGGTGGATGAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAATCACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCTTGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTATGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTAGCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGATTTC] consensusID : consensus_5601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1428 fasta sequence [CTGGGCTTTCACTGTGCAGGTGGGTTGCTCGAACTGTCCAGTCCGGCGTCCGCCGCCGATGGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCCGCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCACCAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGGCGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGCCTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGCCGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGGGATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAA-GGCCACGTGCGTGGACACGGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCACCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCTAGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGGAATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGAAGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCAATGATGAGTTGTGGTATCGCGCTGTTGAGGTATCCGTGCTTTTGTTGACTTGCACTCAAAGAAGTAATCCACGTAGCCCTTGGTATGATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAAAAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTTCCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGATGACAAGACAGTTCTTCTGGTCTTAGAGCGAATCCATGAAGTTATTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGGCTGGTGGATGAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAATCACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCTTGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTATGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTAGCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGATTTCTTTACCATGGA] [+] EMBL AK063936 [CTGGGCTTTCACTGTGCAGGTGGGTTGCTCGAACTGTCCAGTCCGGCGTCCGCCGCCGATGGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCCGCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCACCAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGGCGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGCCTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGCCGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGGGATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAA GGCCACGTGCGTGGACACGGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCACCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCTAGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGGAATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGAAGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCAATGATGAGTTGTGGTATCGCGCTGTTGAGGTATCCGTGCTTTTGTTGACTTGCACTCAAAGAAGTAATCCACGTAGCCCTTGGTATGATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAAAAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTTCCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGATGACAAGACAGTTCTTCTGGTCTTAGAGCGAATCCATGAAGTTATTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGGCTGGTGGATGAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAATCACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCTTGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTATGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTAGCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGATTTCTTTACCATGGA] [+] EMBL D42374 [ gtTGCC GAGGTGGTCCCGCCGCTGAAGGATG TGTTAAGGGCTACGTCCGTGGCCACGGGGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCACCAGTTCAGGTGGCTGGTGTCTCAGGTCACTTATTCTAAGCTTGGC ACTTGTGTTGGCTAGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGG CACCGGAAGTTAAGGAACAGGGAATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5601#0 ----------------------------------TGTCCAGTCCGGCGTCCGCCGCCGAT 26 consensus_5601#1 CTGGGCTTTCACTGTGCAGGTGGGTTGCTCGAACTGTCCAGTCCGGCGTCCGCCGCCGAT 60 ************************** consensus_5601#0 GGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCC 86 consensus_5601#1 GGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCC 120 ************************************************************ consensus_5601#0 GCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCAC 146 consensus_5601#1 GCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCAC 180 ************************************************************ consensus_5601#0 CAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGG 206 consensus_5601#1 CAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGG 240 ************************************************************ consensus_5601#0 CGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGC 266 consensus_5601#1 CGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGC 300 ************************************************************ consensus_5601#0 CTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGC 326 consensus_5601#1 CTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGC 360 ************************************************************ consensus_5601#0 CGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGG 386 consensus_5601#1 CGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGG 420 ************************************************************ consensus_5601#0 GATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAAGGCCACGTGCGTGGACAC 446 consensus_5601#1 GATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAAGGCCACGTGCGTGGACAC 480 ************************************************************ consensus_5601#0 GGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCA 506 consensus_5601#1 GGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCA 540 ************************************************************ consensus_5601#0 CCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCT 566 consensus_5601#1 CCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCT 600 ************************************************************ consensus_5601#0 AGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGG 626 consensus_5601#1 AGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGG 660 ************************************************************ consensus_5601#0 AATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGA 686 consensus_5601#1 AATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGA 720 ************************************************************ consensus_5601#0 AGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCGATGATGAGTTGTGGTATCG 746 consensus_5601#1 AGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCAATGATGAGTTGTGGTATCG 780 **************************************** ******************* consensus_5601#0 CGCTGTTGAGGTAT---------------------------------------------- 760 consensus_5601#1 CGCTGTTGAGGTATCCGTGCTTTTGTTGACTTGCACTCAAAGAAGTAATCCACGTAGCCC 840 ************** consensus_5601#0 -------GATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAA 813 consensus_5601#1 TTGGTATGATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAA 900 ***************************************************** consensus_5601#0 AAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTT 873 consensus_5601#1 AAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTT 960 ************************************************************ consensus_5601#0 CCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGA 933 consensus_5601#1 CCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGA 1020 ************************************************************ consensus_5601#0 TGACAAGACAGTTCTTCTGGTAAGGAATTTTTACATATCGTAGATAAAATAAACTTATAT 993 consensus_5601#1 TGACAAGACAGTTCTTCTGGT--------------------------------------- 1041 ********************* consensus_5601#0 GACCATTAGGTAACATCAGTGATACATTCTTTTCCTTCCTTTTTCTGTAAGATAACCATA 1053 consensus_5601#1 ------------------------------------------------------------ consensus_5601#0 CCGATCAAGCTTATTTATGTGTTAACCATTTGCAGGTCTTAGAGCGAATCCATGAAGTTA 1113 consensus_5601#1 -------------------------------------CTTAGAGCGAATCCATGAAGTTA 1064 *********************** consensus_5601#0 TTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGGTATTAGGAAATATGAGTTA 1173 consensus_5601#1 TTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGG------------------- 1105 ***************************************** consensus_5601#0 TGAGTTACTTCTTTTAATGCCCTCTTGCTCTGCTTGTTATAATATGATGATCAAAAGCTT 1233 consensus_5601#1 ------------------------------------------------------------ consensus_5601#0 ATGTTATTAGCTAATGAAGGTGAGTTGCAACTCATGCTGTGCATATTTAGGCTGGTGGAT 1293 consensus_5601#1 ---------------------------------------------------CTGGTGGAT 1114 ********* consensus_5601#0 GAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAAT 1353 consensus_5601#1 GAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAAT 1174 ************************************************************ consensus_5601#0 CACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCT 1413 consensus_5601#1 CACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCT 1234 ************************************************************ consensus_5601#0 TGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTA 1473 consensus_5601#1 TGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTA 1294 ************************************************************ consensus_5601#0 TGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTA 1533 consensus_5601#1 TGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTA 1354 ************************************************************ consensus_5601#0 GCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGAT 1593 consensus_5601#1 GCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGAT 1414 ************************************************************ consensus_5601#0 TTC----------- 1596 consensus_5601#1 TTCTTTACCATGGA 1428 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||