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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1517 fasta sequence
[CCATCCGGCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACCGCGGCGGCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCCAGGTCTTGAAGTGGCTGCAAGATTTCTCTGATAAGGTGGAGGAGAGAGCTAAAGGAGCCGCTGCAGAAGTCAATGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAAGACCGCGATGATCTCCTTCAACAACCTGACCCGCCAAAGGTTCATTGAACATAAAATTTCAGATGAAGATAGTATGCATCTGAAAACAACGGAGAGTATGCATGGTTCTCTGCAATCCCAAGTGCCAGCTCAGGATTATGAACGTGATATTTTACCAAGATACAAAGAAGCATTACACATAGGACTTTCTTCCTGTAAGGACCACTTCCGAAGCAAGGGACGCTCTACCACCTCTGTGTTCAGGGCTATGTCTGCATATGGCCCTCTTCCACATATAATTGGTTCTGAAGAGTACATTCATGATAACAGCTGTGGTCTGGCAGATGATATGCAGCCTCTAAGTGATGACTTCAGTTGGTTGCGGGAGTTTCAAAGTGAGTCTTCAGACTCACGGACTGCTGATATCTCTGAGTCTCAAATTTTCGGGGCTCAGCGAGGTTATGAGAAGGGGGAAACTGACTCTGTGGTTTCTGCTGCACGAGAATTCAAGGCAATGCTGGAGGCTGCACTTGTTAATCCCTATAAGTTCTATGATGATGCAACTATTACAGCGCAAGATGCTTCTGTAGAGAAGAAGATAAGCACAAGTGAGGACCAAGTTATGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGATAACTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGCGCAGATGCCAATCCTCATGACATCTATTCTGCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATGGATAGAGGGGAGTCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTTGGCACTGCTGATCCAGCTGAAAGGGGCTACTCAATAAACGAGACTACAAATGAGGAGGGATACTTGATTGAAGGGGATGATCCATCACCATCAAACAAAGACGAACAAGATGACCAAACTGATGCACATGGTGTGTCTTCGCCAGAGCCAGAAGATGGTGTTTCTAGACCATCCTAGCCATGCTGATATTGGTTGATTTCTTCTCGAGTGCAGTTCATTCTGTCAAAATCTACTGTAGACGCTGGTGAAGCAACTGAATGGCAATGATTTAGACGAGGAACACACTTTTGCTGCCATGTGCTGAGTGCTGTAGACTAAGAAATTATATACTCCCTTTGTTTCAGGTTATAAGACGTTTTGATTTTTGGTCAAAGTCAGGACAAATTTGTAGAAAAAAATAGTAACATTTTCAAGCCAGGACAAATTTATTATGAAAATATATTTAATTAT]
[+] EMBL AK069806 [CCATCCGGCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACCGCGGCGGCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCCAGGTCTTGAAGTGGCTGCAAGATTTCTCTGATAAGGTGGAGGAGAGAGCTAAAGGAGCCGCTGCAGAAGTCAATGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAAGACCGCGATGATCTCCTTCAACAACCTGACCCGCCAAAGGTTCATTGAACATAAAATTTCAGATGAAGATAGTATGCATCTGAAAACAACGGAGAGTATGCATGGTTCTCTGCAATCCCAAGTGCCAGCTCAGGATTATGAACGTGATATTTTACCAAGATACAAAGAAGCATTACACATAGGACTTTCTTCCTGTAAGGACCACTTCCGAAGCAAGGGACGCTCTACCACCTCTGTGTTCAGGGCTATGTCTGCATATGGCCCTCTTCCACATATAATTGGTTCTGAAGAGTACATTCATGATAACAGCTGTGGTCTGGCAGATGATATGCAGCCTCTAAGTGATGACTTCAGTTGGTTGCGGGAGTTTCAAAGTGAGTCTTCAGACTCACGGACTGCTGATATCTCTGAGTCTCAAATTTTCGGGGCTCAGCGAGGTTATGAGAAGGGGGAAACTGACTCTGTGGTTTCTGCTGCACGAGAATTCAAGGCAATGCTGGAGGCTGCACTTGTTAATCCCTATAAGTTCTATGATGATGCAACTATTACAGCGCAAGATGCTTCTGTAGAGAAGAAGATAAGCACAAGTGAGGACCAAGTTATGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGATAACTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGCGCAGATGCCAATCCTCATGACATCTATTCTGCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATGGATAGAGGGGAGTCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTTGGCACTGCTGATCCAGCTGAAAGGGGCTACTCAATAAACGAGACTACAAATGAGGAGGGATACTTGATTGAAGGGGATGATCCATCACCATCAAACAAAGACGAACAAGATGACCAAACTGATGCACATGGTGTGTCTTCGCCAGAGCCAGAAGATGGTGTTTCTAGACCATCCTAGCCATGCTGATATTGGTTGATTTCTTCTCGAGTGCAGTTCATTCTGTCAAAATCTACTGTAGACGCTGGTGAAGCAACTGAATGGCAATGATTTAGACGAGGAACACACTTTTGCTGCCATGTGCTGAGTGCTGTAGACTAAGAAATTATATACTCCCTTTGTTTCAGGTTATAAGACGTTTTGATTTTTGGTCAAAGTCAGGACAAATTTGTAGAAAAAAATAGTAACATTTTCAAGCCAGGACAAATTTATTATGAAAATATATTTAATTAT]
consensusID : consensus_5605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence
[CACGGGTTCCTCGCCCGGGAGGGCCACATCAACTTCAGTGTCTCCGCCGCGTTCNCCGCCTCTCCCCATCAACTTCGAAGTCATTAGTCGCCGCTTCGAGCTCAACCAAAGAAAATGATCTGTATGCTGGAATGCCCAGAGCTTCCAATTTCACTGTCTGAGATATGTAACCTGTTTGGTTGTTCCAGGTAAATGCAACAAGAAGTTAGTATTTCAGATAAAGTTCCAGAAAAAAAAATGGCGCTATCAAGTTAGTTACTCTAACACTAGGCAAAGTTCCAGAGAAAATGACGCCAAAGTAAACGAATCTAAAAAAGAGCAAAAGAGATACAGAAGTTTCAGTCAAAGAATCTGAAATTCAGCAAAAGTTTCAGAGATTGTGCCAAGTTGGTGACTCTGAAATTCAGCAAAAGTTTCAATGAATGACTGAAATTTAGCAAATGATCCAGCTAATGACTGAAATTCAACAAATTTTCAGTTAATAAATCTGAAATTCTAGGACCAAGTTACGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGATAACTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGTGCAGATGCCAATCCTCATGACATCTATTCTTCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATGGATACAGGGGAATCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTTGGCACTGCTGATCCAGCTGAAAGGGGCTAC]
[-] EMBL CB666593 [CACGGGTTCCTCGCCCGGGAGGGCCACATCAACTTCAGTGTCTCCGCCGCGTTCNCCGCCTCTCCCCATCAACTTCGAAGTCATTAGTCGCCGCTTCGAGCTCAACCAAAGAAAATGATCTGTATGCTGGAATGCCCAGAGCTTCCAATTTCACTGTCTGAGATATGTAACCTGTTTGGTTGTTCCAGGTAAATGCAACAAGAAGTTAGTATTTCAGATAAAGTTCCAGAAAAAAAAATGGCGCTATCAAGTTAGTTACTCTAACACTAGGCAAAGTTCCAGAGAAAATGACGCCAAAGTAAACGAATCTAAAAAAGAGCAAAAGAGATACAGAAGTTTCAGTCAAAGAATCTGAAATTCAGCAAAAGTTTCAGAGATTGTGCCAAGTTGGTGACTCTGAAATTCAGCAAAAGTTTCAATGAATGACTGAAATTTAGCAAATGATCCAGCTAATGACTGAAATTCAACAAATTTTCAGTTAATAAATCTGAAATTCTAGGACCAAGTTACGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGATAACTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGTGCAGATGCCAATCCTCATGACATCTATTCTTCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATGGATACAGGGGAATCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTTGGCACTGCTGATCCAGCTGAAAGGGGCTAC]
consensusID : consensus_5605#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[CCCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACTGCGGCGGCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCCAGGTCTTGAAGTGGCTGCAAGATTTCTCTGATAAGGTGGAGGAGAGAGCTAAAGGAGCCGCTGCAGAAGTCATGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAAGACCGCGATGATCTCCTTCAACAACCTGACCCGCCAAGGTTCATTGAACATGCAAGTAGTGGTTCCAATCTGTATATTGCACTTGTCTTTGGATGCCTCTAGTCTAGAAAGTTATGCTTGCTTTGTGATTGATTTGTTTATATCAGATGACAATATACTTAACTTTTGGCTCGTAGTACACCCTTCTGTGGTCAAGTGTCGTATACTTGTTTTGATTACTNTTGTAAAAGACATAAATTTCAATTTACATAAATTCAATTTATGATAAA]
[+] EMBL BI805536 [CCCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACTGCGGCGGCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCCAGGTCTTGAAGTGGCTGCAAGATTTCTCTGATAAGGTGGAGGAGAGAGCTAAAGGAGCCGCTGCAGAAGTCATGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAAGACCGCGATGATCTCCTTCAACAACCTGACCCGCCAAGGTTCATTGAACATGCAAGTAGTGGTTCCAATCTGTATATTGCACTTGTCTTTGGATGCCTCTAGTCTAGAAAGTTATGCTTGCTTTGTGATTGATTTGTTTATATCAGATGACAATATACTTAACTTTTGGCTCGTAGTACACCCTTCTGTGGTCAAGTGTCGTATACTTGTTTTGATTACTNTTGTAAAAGACATAAATTTCAATTTACATAAATTCAATTTATGATAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5605#0 CCATCCGGCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACCGCGGCG 60
consensus_5605#2 ------CCCGGAGGAAGATGGAGGCGCAGGCGACCCACCGGCGAGCCGGAGACTGCGGCG 54
consensus_5605#1 ------------------------CACGGGTTCCTCGCCCGGGAG--GGCCACATCAACT 34
* * ** * * ** * *** ** ** * *
consensus_5605#0 GCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCC 120
consensus_5605#2 GCGGTGGCGACGGCGGGAGCTCCTCCGCCTCCATCGCCAAGCACCTCGCAAACCAGAGCC 114
consensus_5605#1 TCAGTGTCTCCGCCGCG---TTCNCCGCCTC--TCCCCATCAACTTCGAAGTCATTAGTC 89
* *** * ** ** * * * ******* ** *** ** *** * * ** *
consensus_5605#0 AGGTCTTGAAGT--GGCTGCAAGATTTCTCTGATAAGGTGGAGGAG--AGAGCTAAAGGA 176
consensus_5605#2 AGGTCTTGAAGT--GGCTGCAAGATTTCTCTGATAAGGTGGAGGAG--AGAGCTAAAGGA 170
consensus_5605#1 GCCGCTTCGAGCTCAACCAAAGAAAATGATCTGTATGCTGGAATGCCCAGAGCTTCCAAT 149
*** ** * * * * ** * **** ******
consensus_5605#0 GCCGCTG-CAGAAGTCAATGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAA 235
consensus_5605#2 GCCGCTG-CAGAAGTCA-TGTGTTGTTAGATGAGGCTGGGGCGCTGGAGCTGGATATGAA 228
consensus_5605#1 TTCACTGTCTGAGATATGTAACCTGTTTGGTTGTTCCAGGTAAATGCAACAAGAAGTTAG 209
* *** * ** * * **** * * * ** ** * * ** * *
consensus_5605#0 GACCGC-GATGATCTCCTTCAACAACCTGACCCGCCAAAGGTTCATTGAACATAAAATTT 294
consensus_5605#2 GACCGC-GATGATCTCCTTCAACAACCTGACCCGCCAA-GGTTCATTGAACATGCAAGT- 285
consensus_5605#1 TATTTCAGATAAAGTTCCAGAAAAAAAAATGGCGCTATCAAGTTAGTTACTCTAACACT- 268
* * *** * * * ** ** *** * * * * * * * *
consensus_5605#0 CAGATGAAGATAGTATGCATCTGAAAACAAC---GGAGAGTATGCATGGTTCTCTGCAAT 351
consensus_5605#2 --------AGTGGTTCCAATCTGTATATTGC---ACT---TGTCTTTGGATGCCTCTAGT 331
consensus_5605#1 -----AGGCAAAGTTCCAGAGAAAATGACGCCAAAGTAAACGAATCTAAAAAAGAGCAAA 323
** * * * *
consensus_5605#0 CCCAAGTGCCAGCTCA-GGATTATGAACGTGATATTTTACCAAGATACAAAGAAGCATTA 410
consensus_5605#2 CTAGAAAGTTATGCTT-GCTTTGTGATTGATTTGTTT-------ATATCAGATGACAATA 383
consensus_5605#1 AGAGATACAGAAGTTTCAGTCAAAGAATCTGAAATTCAGCAAAAGTTTCAGAGATTGTGC 383
* * ** ** * *
consensus_5605#0 CAC-ATAGGACTTTCTTCCTGTAAGGACCACTTCCGAAGCAAGGGACGCTCTACCACCT- 468
consensus_5605#2 TAC-TTA--ACTTTTGGCTCGTAGTACACCCTTCTGTGGTCAAGTGTCGTATACT----- 435
consensus_5605#1 CAAGTTGGTGACTCTGAAATTCAGCAAAAGTTTCAATGAATGACTGAAATTTAGCAAATG 443
* * * * *** * **
consensus_5605#0 -CTGTGTTCAGGGCTATGTCTGCATATGGCCCTCTTCCACATATAATTGGTTCTGAAGAG 527
consensus_5605#2 --TGTTTT---GATTACTNTTGTAAAAGAC--------ATAAATTTCAATTTACATAAAT 482
consensus_5605#1 ATCCAGCTAATGACTGAAATTCAACAAATTTTCAGTTAATAAATCTGAAATTC--TAGGA 501
* * * * * * * * ** ** *
consensus_5605#0 TACATTCATGATAACAGCTGTGGTCTGGCAGATGATATGCAGCCTCTAAGTGATGACTTC 587
consensus_5605#2 TCAATTTATGATAAA--------------------------------------------- 497
consensus_5605#1 CCAAGTTACGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGATAA 561
* * * * * *
consensus_5605#0 AGTTGGTTGCGGGAGTTTCAAAGTGAGTCTTCAGACTCACGGACTGCTGATATCTCTGAG 647
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 CTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGTGCAGA--TGCCAATCCTCATGAC 619
consensus_5605#0 TCTCAAATTTTCGGGGCTCAGCGAGGTTATGAGAAGGGGGAAACTGACTCTGTGGTTTCT 707
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ATCTATTCTTCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATG 679
consensus_5605#0 GCTGCACGAGAATTCAAGGCAATGCTGGAGGCTGCACTTGTTAATCCCTATAAGTTCTAT 767
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 GATACAGGGGAATCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTT 739
consensus_5605#0 GATGATGCAACTATTACAGCGCAAGATGCTTCTGTAGAGAAGAAGATAAGCACAAGTGAG 827
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 GGCACTGCTGATCCAGCTGAAAGGGGCTAC------------------------------ 769
consensus_5605#0 GACCAAGTTATGCTGACAGGGACAAGTGAAGCACCGAGTGGAAGATCAGCACAAGAAGAT 887
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ------------------------------------------------------------
consensus_5605#0 AACTCTGAACAGACAGGACTTTTTGCAAGCTTGCAAAGCGCAGATGCCAATCCTCATGAC 947
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ------------------------------------------------------------
consensus_5605#0 ATCTATTCTGCTTTGGTTAGAGAAGGCCTGTTTGATACTGGTGATGAGATTCTGTCTATG 1007
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ------------------------------------------------------------
consensus_5605#0 GATAGAGGGGAGTCTGCTGATACTCCTATTTCAGGCCTAGCGTCAGGTTTAGCAAATCTT 1067
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ------------------------------------------------------------
consensus_5605#0 GGCACTGCTGATCCAGCTGAAAGGGGCTACTCAATAAACGAGACTACAAATGAGGAGGGA 1127
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ------------------------------------------------------------
consensus_5605#0 TACTTGATTGAAGGGGATGATCCATCACCATCAAACAAAGACGAACAAGATGACCAAACT 1187
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ------------------------------------------------------------
consensus_5605#0 GATGCACATGGTGTGTCTTCGCCAGAGCCAGAAGATGGTGTTTCTAGACCATCCTAGCCA 1247
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ------------------------------------------------------------
consensus_5605#0 TGCTGATATTGGTTGATTTCTTCTCGAGTGCAGTTCATTCTGTCAAAATCTACTGTAGAC 1307
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ------------------------------------------------------------
consensus_5605#0 GCTGGTGAAGCAACTGAATGGCAATGATTTAGACGAGGAACACACTTTTGCTGCCATGTG 1367
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ------------------------------------------------------------
consensus_5605#0 CTGAGTGCTGTAGACTAAGAAATTATATACTCCCTTTGTTTCAGGTTATAAGACGTTTTG 1427
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ------------------------------------------------------------
consensus_5605#0 ATTTTTGGTCAAAGTCAGGACAAATTTGTAGAAAAAAATAGTAACATTTTCAAGCCAGGA 1487
consensus_5605#2 ------------------------------------------------------------
consensus_5605#1 ------------------------------------------------------------
consensus_5605#0 CAAATTTATTATGAAAATATATTTAATTAT 1517
consensus_5605#2 ------------------------------
consensus_5605#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||