cluster # 5606

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Oryza sativa
cluster # 5606 cluster # 5606 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5606#0 length = 505 sequences # 1

consensus_5606#1 length = 428 sequences # 1
consensus_5606#2 length = 351 sequences # 1

consensusID : consensus_5606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAACCTAATTAAAATGGCTTTTTTGGGCCCCTTTAATTTCCCAAAAAGGCGGGTCCTTTTTTTACCCCGTTTCCCCCCCCCGGGGTTAAACTAATTTTTAAACCCCCGAGGGAAAAAAAAAAATTTTTAGGGGCTTTGGGGGGGAAACCTTTTTTGGGCAAAAAGGGGGCGGGGAATCGGGCCCCAAAGGGGGGGTTTCCTGAGGGGAAACCCCCGGACCCCCTTAAACCCTTGGAAGGGGCAGGGGCAAATTCTTTAAACCCGGGGGGACTACCCCCTTTAGGGGGGGTAAATTCGGACCTGGGGGAAACCAGGGGCAAACCGGGTTCCCGGGGGAAAATGGTTTCCCCCTCAAAATTCCCCCCAAAATACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGGCCCCCCCCCCTTTAATGGGGGGGCCCCCCC]

[+] EMBL CF298486             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAACCTAATTAAAATGGCTTTTTTGGGCCCCTTTAATTTCCCAAAAAGGCGGGTCCTTTTTTTACCCCGTTTCCCCCCCCCGGGGTTAAACTAATTTTTAAACCCCCGAGGGAAAAAAAAAAATTTTTAGGGGCTTTGGGGGGGAAACCTTTTTTGGGCAAAAAGGGGGCGGGGAATCGGGCCCCAAAGGGGGGGTTTCCTGAGGGGAAACCCCCGGACCCCCTTAAACCCTTGGAAGGGGCAGGGGCAAATTCTTTAAACCCGGGGGGACTACCCCCTTTAGGGGGGGTAAATTCGGACCTGGGGGAAACCAGGGGCAAACCGGGTTCCCGGGGGAAAATGGTTTCCCCCTCAAAATTCCCCCCAAAATACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGGCCCCCCCCCCTTTAATGGGGGGGCCCCCCC]




>consensus_5606#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAA
ACCTAATTAAAATGGCTTTTTTGGGCCCCTTTAATTTCCCAAAAAGGCGGGTCCTTTTTT
TACCCCGTTTCCCCCCCCCGGGGTTAAACTAATTTTTAAACCCCCGAGGGAAAAAAAAAA
ATTTTTAGGGGCTTTGGGGGGGAAACCTTTTTTGGGCAAAAAGGGGGCGGGGAATCGGGC
CCCAAAGGGGGGGTTTCCTGAGGGGAAACCCCCGGACCCCCTTAAACCCTTGGAAGGGGC
AGGGGCAAATTCTTTAAACCCGGGGGGACTACCCCCTTTAGGGGGGGTAAATTCGGACCT
GGGGGAAACCAGGGGCAAACCGGGTTCCCGGGGGAAAATGGTTTCCCCCTCAAAATTCCC
CCCAAAATACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGGGCCCCC
CCCCCTTTAATGGGGGGGCCCCCCC

consensusID : consensus_5606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCGTAAAAAAGACCAACTTTTTTCATAACCCATAAGGGTTTTTTTCCCTTTTCCCAAAAAACAAACCCCCTTTTCCAAGGGGGCTTAAAATTTGGGGGGGAAAAAAGGGCCCCATAAATTCCAAACCCTTTTAAAATCACCCCCTTCACCCCAGGGAAGGGCCCAGGGGCAAATTCTTTAAACCCGGGGGGACTACCCCCTTTAGGGGGGGTAAATTCGGACCTGGGGGAAACCAGGGCCAAAGCGGTTCCCGGGGGAAAATGGTTATCCCCCCAAAATCCCCCAAAAAAAACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGGCCTAAGGGGGGACCCACCCCCCATTATTGGGGGGGCCCCCAC]

[+] EMBL CF328218             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCGTAAAAAAGACCAACTTTTTTCATAACCCATAAGGGTTTTTTTCCCTTTTCCCAAAAAACAAACCCCCTTTTCCAAGGGGGCTTAAAATTTGGGGGGGAAAAAAGGGCCCCATAAATTCCAAACCCTTTTAAAATCACCCCCTTCACCCCAGGGAAGGGCCCAGGGGCAAATTCTTTAAACCCGGGGGGACTACCCCCTTTAGGGGGGGTAAATTCGGACCTGGGGGAAACCAGGGCCAAAGCGGTTCCCGGGGGAAAATGGTTATCCCCCCAAAATCCCCCAAAAAAAACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGGCCTAAGGGGGGACCCACCCCCCATTATTGGGGGGGCCCCCAC]




>consensus_5606#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC
CCGTAAAAAAGACCAACTTTTTTCATAACCCATAAGGGTTTTTTTCCCTTTTCCCAAAAA
ACAAACCCCCTTTTCCAAGGGGGCTTAAAATTTGGGGGGGAAAAAAGGGCCCCATAAATT
CCAAACCCTTTTAAAATCACCCCCTTCACCCCAGGGAAGGGCCCAGGGGCAAATTCTTTA
AACCCGGGGGGACTACCCCCTTTAGGGGGGGTAAATTCGGACCTGGGGGAAACCAGGGCC
AAAGCGGTTCCCGGGGGAAAATGGTTATCCCCCCAAAATCCCCCAAAAAAAACAACCCGG
AACCAAAAAGGGAAAACCCGGGGGGGCCTAAGGGGGGACCCACCCCCCATTATTGGGGGG
GCCCCCAC

consensusID : consensus_5606#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAAAAATTTTCCGATTTTTTATTCTTTTAGGGCCAAATAGGCCCCCCTTCACCCCATGTAAGGGCCCAGGGGCAAATTCTTTAAACCCGGGGGGACTACCCCCTTTAGGGGGGGTAAATTTGGACCTGGGGGAAACCAGGGCCAAACCGGTTCCCGGGGGAAAATGGTTACCCCCTCAAAATTCCCCACAAAATACAACCCGGAAACATAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGACCCACCCCCCTTTATTGGGGGGGCCCCCACG]

[+] EMBL CF298851             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAAAAATTTTCCGATTTTTTATTCTTTTAGGGCCAAATAGGCCCCCCTTCACCCCATGTAAGGGCCCAGGGGCAAATTCTTTAAACCCGGGGGGACTACCCCCTTTAGGGGGGGTAAATTTGGACCTGGGGGAAACCAGGGCCAAACCGGTTCCCGGGGGAAAATGGTTACCCCCTCAAAATTCCCCACAAAATACAACCCGGAAACATAAAGGGAAAACCCGGGGGGCCCTAAGGGGGGACCCACCCCCCTTTATTGGGGGGGCCCCCACG]




>consensus_5606#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTCAAAAAAAAAATTTTCCGATTTTTTATTCTTTTAGGGCCAAATAGG
CCCCCCTTCACCCCATGTAAGGGCCCAGGGGCAAATTCTTTAAACCCGGGGGGACTACCC
CCTTTAGGGGGGGTAAATTTGGACCTGGGGGAAACCAGGGCCAAACCGGTTCCCGGGGGA
AAATGGTTACCCCCTCAAAATTCCCCACAAAATACAACCCGGAAACATAAAGGGAAAACC
CGGGGGGCCCTAAGGGGGGACCCACCCCCCTTTATTGGGGGGGCCCCCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5606#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC 60
consensus_5606#2      ------TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTT-- 52
consensus_5606#0      -----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCA 55
                            **************************** ***********************  

consensus_5606#1      CCGTAAAAAAGACCAACT---TTTTTCATAACCCATAAGGGTT-------------TTTT 104
consensus_5606#2      -----------------T---TTTTT---------------TT-------------TTTT 64
consensus_5606#0      AAAAAACCTAATTAAAATGGCTTTTTTGGGCCCCTTTAATTTCCCAAAAAGGCGGGTCCT 115
                                       *   *****               *              *  *

consensus_5606#1      TCCCTT-------------------------------TTCCCAAA---------AAACAA 124
consensus_5606#2      TTTTTT-------------------------------TTTTCAAA---------AAAAAA 84
consensus_5606#0      TTTTTTACCCCGTTTCCCCCCCCCGGGGTTAAACTAATTTTTAAACCCCCGAGGGAAAAA 175
                      *   **                               **   ***          ** **

consensus_5606#1      ACCCCCTTTTCCAAGGGGGCTT-----AAAATTTGGGGGGGAAAAA-------------- 165
consensus_5606#2      A-----TTTTCCGAT----TTT-----TTATTCTTTTAGGGCCAAA-------------- 116
consensus_5606#0      AAAAAATTTTTAGGGGCTTTGGGGGGGAAACCTTTTTTGGGCAAAAAGGGGGCGGGGAAT 235
                      *     ****                   *   *    ***  ***              

consensus_5606#1      AGGGCCCCATAAATTCCAAACCCTTTTAAAATC-------ACCCCCTTCACCCCAGGGAA 218
consensus_5606#2      TAGGCCCC------------------------------------CCTTCACCCCATGTAA 140
consensus_5606#0      CGGGCCCCAAAGGGGGGGTTTCCTGAGGGGAAACCCCCGGACCCCCTTAAACCCTTGGAA 295
                        ******                                    **** * ***  * **

consensus_5606#1      GGGCCCAGGGGCAAATTCTTTAAACCCGGGGGGACTACCCCCTTTAGGGGGGGTAAATTC 278
consensus_5606#2      GGGCCCAGGGGCAAATTCTTTAAACCCGGGGGGACTACCCCCTTTAGGGGGGGTAAATTT 200
consensus_5606#0      GGGGC-AGGGGCAAATTCTTTAAACCCGGGGGGACTACCCCCTTTAGGGGGGGTAAATTC 354
                      *** * ***************************************************** 

consensus_5606#1      GGACCTGGGGGAAACCAGGGCCAAAGCGG-TTCCCGGGGGAAAATGGTTATCCCCCCAAA 337
consensus_5606#2      GGACCTGGGGGAAACCAGGGCCAAACCGG-TTCCCGGGGGAAAATGGTTACCCCCTCAAA 259
consensus_5606#0      GGACCTGGGGGAAACCAGGGGCAAACCGGGTTCCCGGGGGAAAATGGTTTCCCCCTCAAA 414
                      ******************** **** *** *******************  **** ****

consensus_5606#1      ATCCCCCAAAAAAAACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGGCCTAAGGGGGG 397
consensus_5606#2      ATTCCCCACAAAATACAACCCGGAAACATAAAGGGAAAACCCGGGGGGCCCTAAGGGGGG 319
consensus_5606#0      ATTCCCCCCAAAATACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCCAAGGGGGG 474
                      ** ****  **** *********** ** ******************* ** ********

consensus_5606#1      ACCCACCCCCCATTATTGGGGGGGCCCCCAC- 428
consensus_5606#2      ACCCACCCCCCTTTATTGGGGGGGCCCCCACG 351
consensus_5606#0      GCCCCCCCCCCTTTAATGGGGGGGCCCCCCC- 505
                       *** ****** *** ************* *