cluster # 561

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Oryza sativa
cluster # 561 cluster # 561 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_561#0 length = 718 sequences # 1

consensus_561#1 length = 341 sequences # 1

consensusID : consensus_561#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 718
fasta sequence

                              [GTGGAGTGCGAGCTCCATTAGCACAAGATGCCAATCCCGTCGCCTCATCACGCCATGGCGGCGAGCCCAGCTCTCGCACCAACCCGCACGGTGCCGGTACTGCCGCCGCGCGGGCCGTCTCGCCACCGGAACGCCGCGGCACCGCCGTGTCGGCCTGCGACGGCGCGGATCGGCGCGTCTCCAGGCGACGGCGCGGCCGCGGCAGCAGCGGCTGCGGTGGAGCAGGGCAGTCGGAGCGAGGAGAAGGATAGGAAGCGATGCCTGCGGTGCGGGAGCCTGTATCTCGACGAGGACAACTCCCCCACCGACTGCGCCTTCCACGGCCACGTCACAGGGGAGAAGGGGTTGTTCTCGCTGTCGCCGCCGCACCAGGGGATCGACGGCGAATGGAGCGACAAGAGCGGGGTGATCGTGTACAGGTGGAACGACAGGGGGAGTCGCCCAAACACCGGGAGAGACAACTGGAAGGGGAGGTGGAGCTGCTGCCAGGAGCGCGACGAGGGCGCGCCCCCCTGCCGCCGCGGACGCCACGTCTCCTACGACGACGGTTTCACCCTCTACTAGACGCACTCTCTCTTAAGTACAGCGACGGTTTCACCCTCTACTAGACGCACTCTCTACAGCGAGAATGTGAGAGGAAGTCCCCAAAAAGCATTCGCAATGTTGATTCTGTACGTCAGTGTCAGATCAGTAGTGCGGAGTGTGGTAATCAAATGAA]

[+] EMBL AK108749             [GTGGAGTGCGAGCTCCATTAGCACAAGATGCCAATCCCGTCGCCTCATCACGCCATGGCGGCGAGCCCAGCTCTCGCACCAACCCGCACGGTGCCGGTACTGCCGCCGCGCGGGCCGTCTCGCCACCGGAACGCCGCGGCACCGCCGTGTCGGCCTGCGACGGCGCGGATCGGCGCGTCTCCAGGCGACGGCGCGGCCGCGGCAGCAGCGGCTGCGGTGGAGCAGGGCAGTCGGAGCGAGGAGAAGGATAGGAAGCGATGCCTGCGGTGCGGGAGCCTGTATCTCGACGAGGACAACTCCCCCACCGACTGCGCCTTCCACGGCCACGTCACAGGGGAGAAGGGGTTGTTCTCGCTGTCGCCGCCGCACCAGGGGATCGACGGCGAATGGAGCGACAAGAGCGGGGTGATCGTGTACAGGTGGAACGACAGGGGGAGTCGCCCAAACACCGGGAGAGACAACTGGAAGGGGAGGTGGAGCTGCTGCCAGGAGCGCGACGAGGGCGCGCCCCCCTGCCGCCGCGGACGCCACGTCTCCTACGACGACGGTTTCACCCTCTACTAGACGCACTCTCTCTTAAGTACAGCGACGGTTTCACCCTCTACTAGACGCACTCTCTACAGCGAGAATGTGAGAGGAAGTCCCCAAAAAGCATTCGCAATGTTGATTCTGTACGTCAGTGTCAGATCAGTAGTGCGGAGTGTGGTAATCAAATGAA]




>consensus_561#0
GTGGAGTGCGAGCTCCATTAGCACAAGATGCCAATCCCGTCGCCTCATCACGCCATGGCG
GCGAGCCCAGCTCTCGCACCAACCCGCACGGTGCCGGTACTGCCGCCGCGCGGGCCGTCT
CGCCACCGGAACGCCGCGGCACCGCCGTGTCGGCCTGCGACGGCGCGGATCGGCGCGTCT
CCAGGCGACGGCGCGGCCGCGGCAGCAGCGGCTGCGGTGGAGCAGGGCAGTCGGAGCGAG
GAGAAGGATAGGAAGCGATGCCTGCGGTGCGGGAGCCTGTATCTCGACGAGGACAACTCC
CCCACCGACTGCGCCTTCCACGGCCACGTCACAGGGGAGAAGGGGTTGTTCTCGCTGTCG
CCGCCGCACCAGGGGATCGACGGCGAATGGAGCGACAAGAGCGGGGTGATCGTGTACAGG
TGGAACGACAGGGGGAGTCGCCCAAACACCGGGAGAGACAACTGGAAGGGGAGGTGGAGC
TGCTGCCAGGAGCGCGACGAGGGCGCGCCCCCCTGCCGCCGCGGACGCCACGTCTCCTAC
GACGACGGTTTCACCCTCTACTAGACGCACTCTCTCTTAAGTACAGCGACGGTTTCACCC
TCTACTAGACGCACTCTCTACAGCGAGAATGTGAGAGGAAGTCCCCAAAAAGCATTCGCA
ATGTTGATTCTGTACGTCAGTGTCAGATCAGTAGTGCGGAGTGTGGTAATCAAATGAA

consensusID : consensus_561#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [AGCGGGGTGATCGTGTACAGGTGGAACGACAGGGGGAGTCGCCCAAGCACCGGGAGAGACAACTGGAAGGGGAGGTGGAGCTGCTGCCAGGAGCGCGACGAGGGCGCGCCGCCCTGCCGCCGCGGACGCCACGTCTCCTACGACGACGGTTTCACCCTCTACTAGACGCACTCTCTTAAGTACAGCGAGAATGTGAGAGGCAACCACAAGTCCCCAAAAAGCATTCGCAATGTTGATTCTGTACGTCAGTGTCAGATCAGTGGTGCGGGGTGTGGTAATCAAATGAATTGCTGCTCTAAATCACACATGCATCCATGATGCTAACAATGGAATCCTCTATG]

[+] EMBL CF197411             [AGCGGGGTGATCGTGTACAGGTGGAACGACAGGGGGAGTCGCCCAAGCACCGGGAGAGACAACTGGAAGGGGAGGTGGAGCTGCTGCCAGGAGCGCGACGAGGGCGCGCCGCCCTGCCGCCGCGGACGCCACGTCTCCTACGACGACGGTTTCACCCTCTACTAGACGCACTCTCTTAAGTACAGCGAGAATGTGAGAGGCAACCACAAGTCCCCAAAAAGCATTCGCAATGTTGATTCTGTACGTCAGTGTCAGATCAGTGGTGCGGGGTGTGGTAATCAAATGAATTGCTGCTCTAAATCACACATGCATCCATGATGCTAACAATGGAATCCTCTATG]




>consensus_561#1
AGCGGGGTGATCGTGTACAGGTGGAACGACAGGGGGAGTCGCCCAAGCACCGGGAGAGAC
AACTGGAAGGGGAGGTGGAGCTGCTGCCAGGAGCGCGACGAGGGCGCGCCGCCCTGCCGC
CGCGGACGCCACGTCTCCTACGACGACGGTTTCACCCTCTACTAGACGCACTCTCTTAAG
TACAGCGAGAATGTGAGAGGCAACCACAAGTCCCCAAAAAGCATTCGCAATGTTGATTCT
GTACGTCAGTGTCAGATCAGTGGTGCGGGGTGTGGTAATCAAATGAATTGCTGCTCTAAA
TCACACATGCATCCATGATGCTAACAATGGAATCCTCTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_561#0      GTGGAGTGCGAGCTCCATTAGCACAAGATGCCAATCCCGTCGCCTCATCACGCCATGGCG 60
consensus_561#1      ------------------------------------------------------------
                                                                                 

consensus_561#0      GCGAGCCCAGCTCTCGCACCAACCCGCACGGTGCCGGTACTGCCGCCGCGCGGGCCGTCT 120
consensus_561#1      ------------------------------------------------------------
                                                                                 

consensus_561#0      CGCCACCGGAACGCCGCGGCACCGCCGTGTCGGCCTGCGACGGCGCGGATCGGCGCGTCT 180
consensus_561#1      ------------------------------------------------------------
                                                                                 

consensus_561#0      CCAGGCGACGGCGCGGCCGCGGCAGCAGCGGCTGCGGTGGAGCAGGGCAGTCGGAGCGAG 240
consensus_561#1      ------------------------------------------------------------
                                                                                 

consensus_561#0      GAGAAGGATAGGAAGCGATGCCTGCGGTGCGGGAGCCTGTATCTCGACGAGGACAACTCC 300
consensus_561#1      ------------------------------------------------------------
                                                                                 

consensus_561#0      CCCACCGACTGCGCCTTCCACGGCCACGTCACAGGGGAGAAGGGGTTGTTCTCGCTGTCG 360
consensus_561#1      ------------------------------------------------------------
                                                                                 

consensus_561#0      CCGCCGCACCAGGGGATCGACGGCGAATGGAGCGACAAGAGCGGGGTGATCGTGTACAGG 420
consensus_561#1      ---------------------------------------AGCGGGGTGATCGTGTACAGG 21
                                                            *********************

consensus_561#0      TGGAACGACAGGGGGAGTCGCCCAAACACCGGGAGAGACAACTGGAAGGGGAGGTGGAGC 480
consensus_561#1      TGGAACGACAGGGGGAGTCGCCCAAGCACCGGGAGAGACAACTGGAAGGGGAGGTGGAGC 81
                     ************************* **********************************

consensus_561#0      TGCTGCCAGGAGCGCGACGAGGGCGCGCCCCCCTGCCGCCGCGGACGCCACGTCTCCTAC 540
consensus_561#1      TGCTGCCAGGAGCGCGACGAGGGCGCGCCGCCCTGCCGCCGCGGACGCCACGTCTCCTAC 141
                     ***************************** ******************************

consensus_561#0      GACGACGGTTTCACCCTCTACTAGACGCACTCTCTCTTAAGTACAGCGACGGTTTCACCC 600
consensus_561#1      GACGACGGTTTCACCCTCTACTAGACGCACTCTCT--TAAGTACAGCGAGAAT------- 192
                     ***********************************  ************   *       

consensus_561#0      TCTACTAGACGCACTCTCTACAGCGAGAATGTGAGAGGAAGTCCCCAAAAAGCATTCGCA 660
consensus_561#1      ----------------------GTGAGAG-GCAACCACAAGTCCCCAAAAAGCATTCGCA 229
                                           * ****  *  *    **********************

consensus_561#0      ATGTTGATTCTGTACGTCAGTGTCAGATCAGTAGTGCGGAGTGTGGTAATCAAATGAA-- 718
consensus_561#1      ATGTTGATTCTGTACGTCAGTGTCAGATCAGTGGTGCGGGGTGTGGTAATCAAATGAATT 289
                     ******************************** ****** ******************  

consensus_561#0      ----------------------------------------------------
consensus_561#1      GCTGCTCTAAATCACACATGCATCCATGATGCTAACAATGGAATCCTCTATG 341