cluster # 5610

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Oryza sativa
cluster # 5610 cluster # 5610 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5610#0 length = 743 sequences # 2

consensus_5610#1 length = 738 sequences # 1

consensusID : consensus_5610#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 743
fasta sequence

                              [CTTTTTTTTTGGACGAAATTTGATTCTAAAATTCCCATTGCCCAAAGATATCAAAGTAGAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCCACAAAGATCCACTT]

[+] EMBL CB641829             [CTTTTTTTTTGGACGAAATTTGATTCTAAAATTCCCATTGCCCAAAGATATCAAAGTAGAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCCACAAAGATCCACTT]
[-] EMBL AK059167             [                    TGATTCTAAAATTCCCATTGAACAAAGATATCAAAGTAGAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTttttt                                                                                                                                                                                                   ]




>consensus_5610#0
CTTTTTTTTTGGACGAAATTTGATTCTAAAATTCCCATTGCCCAAAGATATCAAAGTAGA
ACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATG
GCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTT
AAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCT
ACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCA
ATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAA
AGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGA
ATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGG
TGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTC
TTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGA
GACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATG
AGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGA
ATGTTGTCCACAAAGATCCACTT

consensusID : consensus_5610#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 738
fasta sequence

                              [CCTCTTTTTTTTTTTTTTTTTTTTTTGAACAAAGATATCAAAGTACAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATATAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGCTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAAATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCAACAAAGATCCACTTGGTTCATT]

[+] EMBL CB623288             [CCTCTTTTTTTTTTTTTTTTTTTTTTGAACAAAGATATCAAAGTACAACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATATAACAAATGGCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTGCTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAAATAATCCAATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCAACAAAGATCCACTTGGTTCATT]




>consensus_5610#1
CCTCTTTTTTTTTTTTTTTTTTTTTTGAACAAAGATATCAAAGTACAACAGCAGCAACAC
GAACAAATTCGGTACAATGTATTTGCAGATACTCTATATAACAAATGGCCAAACTGCTCA
CGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTTAAGAGCATTTTTG
CTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCTACATCATATTACA
GAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAAATAATCCAATTAACCCATTTG
CCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAAAGCAGCAGACCAC
CTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGAATCATCAACGATT
CATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGGTGGTGCATTAGGA
TCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTCTTTGAACATCTTC
ATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGAGACCTAGTAAGTT
CTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATGAGCCTCTTATCTC
ATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGAATGTTGTCAACAA
AGATCCACTTGGTTCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5610#0      CTTTTTTTTTGGACGAAATTTGATTCTAAAATTCCCATTGCCCAAAGATATCAAAGTAGA 60
consensus_5610#1      -------------CCTCTTTTTTTTTTTTTTTTTTTTTTGAACAAAGATATCAAAGTACA 47
                                   *    ***  ** *    **    ***  **************** *

consensus_5610#0      ACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATACAACAAATG 120
consensus_5610#1      ACAGCAGCAACACGAACAAATTCGGTACAATGTATTTGCAGATACTCTATATAACAAATG 107
                      *************************************************** ********

consensus_5610#0      GCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTT 180
consensus_5610#1      GCCAAACTGCTCACGAGGCAGCCCTGCTTATGATGCATCTCCACAACACCAACAGAGCTT 167
                      ************************************************************

consensus_5610#0      AAGAGCATTTTTGGTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCT 240
consensus_5610#1      AAGAGCATTTTTGCTTGAGCAAGTGTCAAGCCCTAAGCATGCCAATTTCAGCTATTCTCT 227
                      ************* **********************************************

consensus_5610#0      ACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAGATAATCCA 300
consensus_5610#1      ACATCATATTACAGAAGGCTTTGTGAACACAACACGGATGGAATGCACCTAAATAATCCA 287
                      *************************************************** ********

consensus_5610#0      ATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAA 360
consensus_5610#1      ATTAACCCATTTGCCTCGGGTCTTCTACTGCAGGGATGAACACAATATGTTGCCATTCAA 347
                      ************************************************************

consensus_5610#0      AGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGA 420
consensus_5610#1      AGCAGCAGACCACCTGCAACTCCACTAGTCCACTGACATTTTTTTAGGATCATGCAAGGA 407
                      ************************************************************

consensus_5610#0      ATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGG 480
consensus_5610#1      ATCATCAACGATTCATGGTGATCGAATTTCACAACGAGCAACGAAGGTTTATTACCCAGG 467
                      ************************************************************

consensus_5610#0      TGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTC 540
consensus_5610#1      TGGTGCATTAGGATCGCTCCTCCGACCTTGATCTTACAAATCTCCGGCGACTCCTTGGTC 527
                      ************************************************************

consensus_5610#0      TTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGA 600
consensus_5610#1      TTTGAACATCTTCATCTAGGTTTTCCTCCTCATCGTCCTCGTCCTCGTCTTCATATTGGA 587
                      ************************************************************

consensus_5610#0      GACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATG 660
consensus_5610#1      GACCTAGTAAGTTCTCTCCCCATAAATAACGGCGCCTCTGCCTTCTCAGGCCCCTCGATG 647
                      ************************************************************

consensus_5610#0      AGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGA 720
consensus_5610#1      AGCCTCTTATCTCATCTCCTGATCTCATCGGACTACTACTGATCATATGGAACAGAAAGA 707
                      ************************************************************

consensus_5610#0      ATGTTGTCCACAAAGATCCACTT-------- 743
consensus_5610#1      ATGTTGTCAACAAAGATCCACTTGGTTCATT 738
                      ******** **************