These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 432 fasta sequence [AGGCGCTGAGGGCGATCGGGGAGGGTTTCCTNCGGGCGGAACAAAGGCGGATGGAGGCGGCGAGGAAAACNCAGCAAATGCGCATGGANATGGCACTCCGGCNCCTCGATTCGCANCGGAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTANAGTAAATCTCGGTGGCGCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCNCTGGCTTGGCTTGCGAGTTTAGGAGTTAATTANAGTTGTTCATATGTACTGTGATGGATGTNTGATGTAGGCGTAGCTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGNGTATGGAAAATAATAACTTAGCCTGTTNTGTGTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU181452 [AGGCGCTGAGGGCGATCGGGGAGGGTTTCCTNCGGGCGGAACAAAGGCGGATGGAGGCGGCGAGGAAAACNCAGCAAATGCGCATGGANATGGCACTCCGGCNCCTCGATTCGCANCGGAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTANAGTAAATCTCGGTGGCGCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCNCTGGCTTGGCTTGCGAGTTTAGGAGTTAATTANAGTTGTTCATATGTACTGTGATGGATGTNTGATGTAGGCGTAGCTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGNGTATGGAAAATAATAACTTAGCCTGTTNTGTGTTTNAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF314224 [ CTATCTATCTTGTATGGCGTATGGAAAATAATAACTTAGCCTGTTCTGTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [ACAGAGAACGCGTGGGTNGAGGAGGGTTTCCTGCGGGCGGACAGAGGCGGATGGAGGCGGCGAGGAAGACGCAGCAGATGCGCATGGAGATGGCACTCCGGCACCTCGATTCGCAGCGGAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTAGAGTAAATCTCGGTGGCGCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCACTGGCTTGGCTTGCGAGTTTAGGAGTTAATTAGAGTTGTTCATATGTACTGTGATGGATGTCTGATGTAGGCGTACTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGCGTATGGAAAATAATAACTTAGCCTGTTCTGTGTTTGAAAAAAAAAAA] [+] EMBL AU071266 [ACAGAGAACGCGTGGGTNGAGGAGGGTTTCCTGCGGGCGGACAGAGGCGGATGGAGGCGGCGAGGAAGACGCAGCAGATGCGCATGGAGATGGCACTCCGGCACCTCGATTCGCAGCGGAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTAGAGTAAATCTCGGTGGCGCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCACTGGCTTGGCTTGCGAGTTTAGGAGTTAATTAGAGTTGTTCATATGTACTGTGATGGATGTCTGATGTAGGCGTACTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGCGTATGGAAAATAATAACTTAGCCTGTTCTGTGTTTGAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5614#0 --AGGCGCTGAGGGCGATCGGGGAGGGTTTCCTNCGGGCGGAACAAAGGCGGATGGAGGC 58 consensus_5614#1 ACAGAGAACGCGTG-GGTNGAGGAGGGTTTCCTGCGGGCGGA-CAGAGGCGGATGGAGGC 58 ** * * * * * * ************ ******** ** ************** consensus_5614#0 GGCGAGGAAAACNCAGCAAATGCGCATGGANATGGCACTCCGGCNCCTCGATTCGCANCG 118 consensus_5614#1 GGCGAGGAAGACGCAGCAGATGCGCATGGAGATGGCACTCCGGCACCTCGATTCGCAGCG 118 ********* ** ***** *********** ************* ************ ** consensus_5614#0 GAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTANAGTAAATCTCGGTGGC 178 consensus_5614#1 GAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTAGAGTAAATCTCGGTGGC 178 ******************************************* **************** consensus_5614#0 GCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCNCTGGCTTGGCTTG 238 consensus_5614#1 GCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCACTGGCTTGGCTTG 238 ********************************************** ************* consensus_5614#0 CGAGTTTAGGAGTTAATTANAGTTGTTCATATGTACTGTGATGGATGTNTGATGTAGGCG 298 consensus_5614#1 CGAGTTTAGGAGTTAATTAGAGTTGTTCATATGTACTGTGATGGATGTCTGATGTAGGCG 298 ******************* **************************** *********** consensus_5614#0 TAGCTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGNGTATGGAAAATAATAAC 358 consensus_5614#1 TA-CTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGCGTATGGAAAATAATAAC 357 ** *************************************** ***************** consensus_5614#0 TTAGCCTGTTNTGTGTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 418 consensus_5614#1 TTAGCCTGTTCTGTGTTTGAAAAAAAAAAA------------------------------ 387 ********** ******* *********** consensus_5614#0 AAAAAAAAAAAAAA 432 consensus_5614#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||