cluster # 5614

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Oryza sativa
cluster # 5614 cluster # 5614 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5614#0 length = 432 sequences # 2

consensus_5614#1 length = 387 sequences # 1

consensusID : consensus_5614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 432
fasta sequence

                              [AGGCGCTGAGGGCGATCGGGGAGGGTTTCCTNCGGGCGGAACAAAGGCGGATGGAGGCGGCGAGGAAAACNCAGCAAATGCGCATGGANATGGCACTCCGGCNCCTCGATTCGCANCGGAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTANAGTAAATCTCGGTGGCGCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCNCTGGCTTGGCTTGCGAGTTTAGGAGTTAATTANAGTTGTTCATATGTACTGTGATGGATGTNTGATGTAGGCGTAGCTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGNGTATGGAAAATAATAACTTAGCCTGTTNTGTGTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU181452             [AGGCGCTGAGGGCGATCGGGGAGGGTTTCCTNCGGGCGGAACAAAGGCGGATGGAGGCGGCGAGGAAAACNCAGCAAATGCGCATGGANATGGCACTCCGGCNCCTCGATTCGCANCGGAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTANAGTAAATCTCGGTGGCGCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCNCTGGCTTGGCTTGCGAGTTTAGGAGTTAATTANAGTTGTTCATATGTACTGTGATGGATGTNTGATGTAGGCGTAGCTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGNGTATGGAAAATAATAACTTAGCCTGTTNTGTGTTTNAAAAAAAAAAAAAAAAAAAAAAAAA                              ]
[+] EMBL CF314224             [                                                                                                                                                                                                                                                                                                                                   CTATCTATCTTGTATGGCGTATGGAAAATAATAACTTAGCCTGTTCTGTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5614#0
AGGCGCTGAGGGCGATCGGGGAGGGTTTCCTNCGGGCGGAACAAAGGCGGATGGAGGCGG
CGAGGAAAACNCAGCAAATGCGCATGGANATGGCACTCCGGCNCCTCGATTCGCANCGGA
GGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTANAGTAAATCTCGGTGGCGC
AAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCNCTGGCTTGGCTTGCG
AGTTTAGGAGTTAATTANAGTTGTTCATATGTACTGTGATGGATGTNTGATGTAGGCGTA
GCTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGNGTATGGAAAATAATAACTT
AGCCTGTTNTGTGTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

consensusID : consensus_5614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [ACAGAGAACGCGTGGGTNGAGGAGGGTTTCCTGCGGGCGGACAGAGGCGGATGGAGGCGGCGAGGAAGACGCAGCAGATGCGCATGGAGATGGCACTCCGGCACCTCGATTCGCAGCGGAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTAGAGTAAATCTCGGTGGCGCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCACTGGCTTGGCTTGCGAGTTTAGGAGTTAATTAGAGTTGTTCATATGTACTGTGATGGATGTCTGATGTAGGCGTACTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGCGTATGGAAAATAATAACTTAGCCTGTTCTGTGTTTGAAAAAAAAAAA]

[+] EMBL AU071266             [ACAGAGAACGCGTGGGTNGAGGAGGGTTTCCTGCGGGCGGACAGAGGCGGATGGAGGCGGCGAGGAAGACGCAGCAGATGCGCATGGAGATGGCACTCCGGCACCTCGATTCGCAGCGGAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTAGAGTAAATCTCGGTGGCGCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCACTGGCTTGGCTTGCGAGTTTAGGAGTTAATTAGAGTTGTTCATATGTACTGTGATGGATGTCTGATGTAGGCGTACTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGCGTATGGAAAATAATAACTTAGCCTGTTCTGTGTTTGAAAAAAAAAAA]




>consensus_5614#1
ACAGAGAACGCGTGGGTNGAGGAGGGTTTCCTGCGGGCGGACAGAGGCGGATGGAGGCGG
CGAGGAAGACGCAGCAGATGCGCATGGAGATGGCACTCCGGCACCTCGATTCGCAGCGGA
GGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTAGAGTAAATCTCGGTGGCGC
AAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCACTGGCTTGGCTTGCG
AGTTTAGGAGTTAATTAGAGTTGTTCATATGTACTGTGATGGATGTCTGATGTAGGCGTA
CTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGCGTATGGAAAATAATAACTTA
GCCTGTTCTGTGTTTGAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5614#0      --AGGCGCTGAGGGCGATCGGGGAGGGTTTCCTNCGGGCGGAACAAAGGCGGATGGAGGC 58
consensus_5614#1      ACAGAGAACGCGTG-GGTNGAGGAGGGTTTCCTGCGGGCGGA-CAGAGGCGGATGGAGGC 58
                        **     * * * * * * ************ ******** ** **************

consensus_5614#0      GGCGAGGAAAACNCAGCAAATGCGCATGGANATGGCACTCCGGCNCCTCGATTCGCANCG 118
consensus_5614#1      GGCGAGGAAGACGCAGCAGATGCGCATGGAGATGGCACTCCGGCACCTCGATTCGCAGCG 118
                      ********* ** ***** *********** ************* ************ **

consensus_5614#0      GAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTANAGTAAATCTCGGTGGC 178
consensus_5614#1      GAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTAGAGTAAATCTCGGTGGC 178
                      ******************************************* ****************

consensus_5614#0      GCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCNCTGGCTTGGCTTG 238
consensus_5614#1      GCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCACTGGCTTGGCTTG 238
                      ********************************************** *************

consensus_5614#0      CGAGTTTAGGAGTTAATTANAGTTGTTCATATGTACTGTGATGGATGTNTGATGTAGGCG 298
consensus_5614#1      CGAGTTTAGGAGTTAATTAGAGTTGTTCATATGTACTGTGATGGATGTCTGATGTAGGCG 298
                      ******************* **************************** ***********

consensus_5614#0      TAGCTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGNGTATGGAAAATAATAAC 358
consensus_5614#1      TA-CTTGGAAATCGTAGTAACCTTTCTATCTATCTTGTATGGCGTATGGAAAATAATAAC 357
                      ** *************************************** *****************

consensus_5614#0      TTAGCCTGTTNTGTGTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 418
consensus_5614#1      TTAGCCTGTTCTGTGTTTGAAAAAAAAAAA------------------------------ 387
                      ********** ******* ***********                              

consensus_5614#0      AAAAAAAAAAAAAA 432
consensus_5614#1      --------------