cluster # 5618

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Oryza sativa
cluster # 5618 cluster # 5618 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5618#0 length = 1227 sequences # 2

consensus_5618#1 length = 526 sequences # 1

consensusID : consensus_5618#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1227
fasta sequence

                              [AGTGGAGGCAGCCATTCATTAAGTTTTAGAAGAAGCACAAGTACACGCCCTTGTTTACCTAAGTATTGGGGGGAACAATATCAAATTCATCACAAAGAAGAAAACAAAGTGCTTGCAGCACCCCCTTCACTAATAACGATCGACATAGCAATGTATGGCCATGTACCTCAGTAATAAGGTAGAAATTTTATTCAACCAGCTTCTCGTTGAAGTTCCTCACCTCCATCCTTGATCACCGAGAAATCAGATGCCTAGTCACGTCCAGCCGGGATCGATTTGCAGCCGCCGGGGAGAGAGTGGAGAGGCGATACGGTGTGCGATGGTGGTGGAGGTGGTCGAAGGGGAGAGAGCGGAGCGGAGATGCAGAGGAAGGCGTCTACTTTGAAGCTGCTCAATTAATTTATCCCAGGTGGAGGTGTAGGGGAGGGGGGAAGCGGGTGGCTCCCGTCGATCCGGCGGTGGCACAGGTGGAGCGGCTGCGCAGCCGATGGAGGAGGTCGGTTGGAGGCTCCCTATGACGGCGCAGGTGGAGCGGCTGGCGGCTCCCGTCGATCCGGCGGTGGCATAGGTTGAGCGGCAGCGCAGCCGATGGAGGAGGTCGGAGTGCGTAAAATTTCAGGTCAACGCATTCTCCCTCATCTGCCAAGCAAAAGCATAAAAACTTGATGTATAATATAAGAAGTAAAACTGAAACAAAGATAGAAAGCAATATGAACCATGAGTATGTCTAGATAACAGAGAAACCTACTCAGATTTGCTATTTAAATTTGGTTGAGATAAATGCATATTACAAATAATTAAGGGAGGCAGAGCTGAGGCAAGCTTTAGCTAACAGGTTATTTCTACTTGATTGCAACGAAAGTATCACTGCGAAGAAATGCTCAGCATCGATAGTGAGCTGTGCAGCCCAGCATCTCAGAAATCAAGGTACATTCGATTTCATCCAATGGAAAATCGCATCAGTTGTTCAGTATTTACAGTCGAACCTAAGATTTGGAAATAACAGCCTCAATCTCCTATGGGGAAAATCAGTAACTCCATTTGCTTCAAGTGACTCTATCTAGCATCGGTCTCACTGAAATCAACAAGGCAAGGCACAGATCGTTCAAGCGTAACAAAACCAAAGCTATTGCAAGAACATAGGTTGAAACTGAAAGGGAGAGAAGATGAAATCTAGGGTTTGGGTAACAAACACACACCTCGAGAACAAACGAATCGAAACTTTTC]

[+] EMBL CB675643             [AGTGGAGGCAGCCATTCATTAAGTTTTAGAAGAAGCACAAGTACACGCCCTTGTTTACCTAAGTATTGGGGGGAACAATATCAAATTCATCACAAAGAAGAAAACAAAGTGCTTGCAGCACCCCCTTCACTAATAACGATCGACATAGCAATGTATGGCCATGTACCTCAGTAATAAGGTAGAAATTTTATTCAACCAGCTTCTCGTTGAAGTTCCTCACCTCCATCCTTGATCACCGAGAAATCAGATGCCTAGTCACGTCCAGCCGGGATCGATTTGCAGCCGCCGGGGAGAGAGTGGAGAGGCGATACGGTGTGCGATGGTGGTGGAGGTGGTCGAAGGGGAGAGAGCGGAGCGGAGATGCAGAGGAAGGCGTCTACTTTGAAGCTGCTCAATTAATTTATCCCAGGTGGAGGTGTAGGGGAGGGGGGAAGCGGGTGGCTCCCGTCGATCCGGCGGTGGCACAGGTGGAGCGGCTGCGCAGCCGATGGAGGAGGTCGGTTGGAGGCTCCCTATGACGGCGCAGGTGGAGCGGCTGGCGGCTCCCGTCGATCCGGCGGTGGCATAGGTTGAGCGGCAGCGCAGCCGATGGAGGAGGTCGGAGTGCGTAAAATTTCAGGTCAACGCATTCTCCCTCATCTGCCAAGCAAAAGCATAAAAACTTGATGTATAATATAAGAAGTAAAACTGAAACAAAGATAGAAAGCAATATGAACCATGAGTATGTCTAGATAACAGAGAAACCTACTCAGATTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB675642             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGGTGGAGCGGCTGGCGGCTCCCGTCGATCCGGCGGTGGCATAGGTTGAGCGGCAGCGCAGCCGATGGAGGAGGTCGGAGTGCGTAAAATTTCAGGTCAACGCATTCTCCCTCATCTGCCAAGCAAAAGCATAAAAACTTGATGTATAATATAAGAAGTAAAACTGAAACAAAGATAGAAAGCAATATGAACCATGAGTATGTCTAGATAACAGAGAAACCTACTCAGATTTGCTATTTAAATTTGGTTGAGATAAATGCATATTACAAATAATTAAGGGAGGCAGAGCTGAGGCAAGCTTTAGCTAACAGGTTATTTCTACTTGATTGCAACGAAAGTATCACTGCGAAGAAATGCTCAGCATCGATAGTGAGCTGTGCAGCCCAGCATCTCAGAAATCAAGGTACATTCGATTTCATCCAATGGAAAATCGCATCAGTTGTTCAGTATTTACAGTCGAACCTAAGATTTGGAAATAACAGCCTCAATCTCCTATGGGGAAAATCAGTAACTCCATTTGCTTCAAGTGACTCTATCTAGCATCGGTCTCACTGAAATCAACAAGGCAAGGCACAGATCGTTCAAGCGTAACAAAACCAAAGCTATTGCAAGAACATAGGTTGAAACTGAAAGGGAGAGAAGATGAAATCTAGGGTTTGGGTAACAAACACACACCTCGAGAACAAACGAATCGAAACTTTTC]




>consensus_5618#0
AGTGGAGGCAGCCATTCATTAAGTTTTAGAAGAAGCACAAGTACACGCCCTTGTTTACCT
AAGTATTGGGGGGAACAATATCAAATTCATCACAAAGAAGAAAACAAAGTGCTTGCAGCA
CCCCCTTCACTAATAACGATCGACATAGCAATGTATGGCCATGTACCTCAGTAATAAGGT
AGAAATTTTATTCAACCAGCTTCTCGTTGAAGTTCCTCACCTCCATCCTTGATCACCGAG
AAATCAGATGCCTAGTCACGTCCAGCCGGGATCGATTTGCAGCCGCCGGGGAGAGAGTGG
AGAGGCGATACGGTGTGCGATGGTGGTGGAGGTGGTCGAAGGGGAGAGAGCGGAGCGGAG
ATGCAGAGGAAGGCGTCTACTTTGAAGCTGCTCAATTAATTTATCCCAGGTGGAGGTGTA
GGGGAGGGGGGAAGCGGGTGGCTCCCGTCGATCCGGCGGTGGCACAGGTGGAGCGGCTGC
GCAGCCGATGGAGGAGGTCGGTTGGAGGCTCCCTATGACGGCGCAGGTGGAGCGGCTGGC
GGCTCCCGTCGATCCGGCGGTGGCATAGGTTGAGCGGCAGCGCAGCCGATGGAGGAGGTC
GGAGTGCGTAAAATTTCAGGTCAACGCATTCTCCCTCATCTGCCAAGCAAAAGCATAAAA
ACTTGATGTATAATATAAGAAGTAAAACTGAAACAAAGATAGAAAGCAATATGAACCATG
AGTATGTCTAGATAACAGAGAAACCTACTCAGATTTGCTATTTAAATTTGGTTGAGATAA
ATGCATATTACAAATAATTAAGGGAGGCAGAGCTGAGGCAAGCTTTAGCTAACAGGTTAT
TTCTACTTGATTGCAACGAAAGTATCACTGCGAAGAAATGCTCAGCATCGATAGTGAGCT
GTGCAGCCCAGCATCTCAGAAATCAAGGTACATTCGATTTCATCCAATGGAAAATCGCAT
CAGTTGTTCAGTATTTACAGTCGAACCTAAGATTTGGAAATAACAGCCTCAATCTCCTAT
GGGGAAAATCAGTAACTCCATTTGCTTCAAGTGACTCTATCTAGCATCGGTCTCACTGAA
ATCAACAAGGCAAGGCACAGATCGTTCAAGCGTAACAAAACCAAAGCTATTGCAAGAACA
TAGGTTGAAACTGAAAGGGAGAGAAGATGAAATCTAGGGTTTGGGTAACAAACACACACC
TCGAGAACAAACGAATCGAAACTTTTC

consensusID : consensus_5618#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [GGAGGTGTTCGAAAGGGAGAGAGCGGACCGNAGATGCAGAGGAAGGCGTCTACTTGAAGCTGCTCAATTAATTTATCCCAGGTGNAGGTGTAGGGAAGGGGGAAGCGGGTGGCTCNCCGTCGATCCGGCGGTGGCACAGGTGGAGCGGCTGCGCAGCCGATGGAGGAGGTCGGTTGGAGGCTCCCTATGACGGCGCAGGTGGAGCGGCTGGCGGCTCCCGTCGATCCGGCGGTGGCATAGGTTGAGCGGCAGCGCAGCCGATGGAGGAGGTCGGAGTGCGTAAAATTTCAGGTCAACGCATTCTCCCTCATCTCGAGAACAAACGAATCGAAACTTTTCTTGTCGTTCTCAATCCTGCTCCTGGGTGGGGCGTCGCCGTCGGCGGAGGCGGTGGACTCCTCCATCCCCGGTGCACAGCCAACCCTCCACATCCCCGGGAGCGCGACGGCGGAGGCGGCGAAGAGGAGGTGGGCGCGTCGTCGGCGGTTGGATCGCTACCACGATCTGGCCTGGCCTTGTGGGGGAG]

[-] EMBL CA758578             [GGAGGTGTTCGAAAGGGAGAGAGCGGACCGNAGATGCAGAGGAAGGCGTCTACTTGAAGCTGCTCAATTAATTTATCCCAGGTGNAGGTGTAGGGAAGGGGGAAGCGGGTGGCTCNCCGTCGATCCGGCGGTGGCACAGGTGGAGCGGCTGCGCAGCCGATGGAGGAGGTCGGTTGGAGGCTCCCTATGACGGCGCAGGTGGAGCGGCTGGCGGCTCCCGTCGATCCGGCGGTGGCATAGGTTGAGCGGCAGCGCAGCCGATGGAGGAGGTCGGAGTGCGTAAAATTTCAGGTCAACGCATTCTCCCTCATCTCGAGAACAAACGAATCGAAACTTTTCTTGTCGTTCTCAATCCTGCTCCTGGGTGGGGCGTCGCCGTCGGCGGAGGCGGTGGACTCCTCCATCCCCGGTGCACAGCCAACCCTCCACATCCCCGGGAGCGCGACGGCGGAGGCGGCGAAGAGGAGGTGGGCGCGTCGTCGGCGGTTGGATCGCTACCACGATCTGGCCTGGCCTTGTGGGGGAG]




>consensus_5618#1
GGAGGTGTTCGAAAGGGAGAGAGCGGACCGNAGATGCAGAGGAAGGCGTCTACTTGAAGC
TGCTCAATTAATTTATCCCAGGTGNAGGTGTAGGGAAGGGGGAAGCGGGTGGCTCNCCGT
CGATCCGGCGGTGGCACAGGTGGAGCGGCTGCGCAGCCGATGGAGGAGGTCGGTTGGAGG
CTCCCTATGACGGCGCAGGTGGAGCGGCTGGCGGCTCCCGTCGATCCGGCGGTGGCATAG
GTTGAGCGGCAGCGCAGCCGATGGAGGAGGTCGGAGTGCGTAAAATTTCAGGTCAACGCA
TTCTCCCTCATCTCGAGAACAAACGAATCGAAACTTTTCTTGTCGTTCTCAATCCTGCTC
CTGGGTGGGGCGTCGCCGTCGGCGGAGGCGGTGGACTCCTCCATCCCCGGTGCACAGCCA
ACCCTCCACATCCCCGGGAGCGCGACGGCGGAGGCGGCGAAGAGGAGGTGGGCGCGTCGT
CGGCGGTTGGATCGCTACCACGATCTGGCCTGGCCTTGTGGGGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5618#0      AGTGGAGGCAGCCATTCATTAAGTTTTAGAAGAAGCACAAGTACACGCCCTTGTTTACCT 60
consensus_5618#1      ------------------------------------------------------------
                                                                                  

consensus_5618#0      AAGTATTGGGGGGAACAATATCAAATTCATCACAAAGAAGAAAACAAAGTGCTTGCAGCA 120
consensus_5618#1      ------------------------------------------------------------
                                                                                  

consensus_5618#0      CCCCCTTCACTAATAACGATCGACATAGCAATGTATGGCCATGTACCTCAGTAATAAGGT 180
consensus_5618#1      ------------------------------------------------------------
                                                                                  

consensus_5618#0      AGAAATTTTATTCAACCAGCTTCTCGTTGAAGTTCCTCACCTCCATCCTTGATCACCGAG 240
consensus_5618#1      ------------------------------------------------------------
                                                                                  

consensus_5618#0      AAATCAGATGCCTAGTCACGTCCAGCCGGGATCGATTTGCAGCCGCCGGGGAGAGAGTGG 300
consensus_5618#1      ------------------------------------------------------------
                                                                                  

consensus_5618#0      AGAGGCGATACGGTGTGCGATGGTGGTGGAGGTGGTCGAAGGGGAGAGAGCGGAGCGGAG 360
consensus_5618#1      ---------------------------GGAGGTGTTCGAAAGGGAGAGAGCGGACCGNAG 33
                                                 ******* ***** ************* ** **

consensus_5618#0      ATGCAGAGGAAGGCGTCTACTTTGAAGCTGCTCAATTAATTTATCCCAGGTGGAGGTGTA 420
consensus_5618#1      ATGCAGAGGAAGGCGTCTACTT-GAAGCTGCTCAATTAATTTATCCCAGGTGNAGGTGTA 92
                      ********************** ***************************** *******

consensus_5618#0      GGGGAGGGGGGAAGCGGGTGGCTCCC-GTCGATCCGGCGGTGGCACAGGTGGAGCGGCTG 479
consensus_5618#1      GGGAAGGGGG-AAGCGGGTGGCTCNCCGTCGATCCGGCGGTGGCACAGGTGGAGCGGCTG 151
                      *** ****** ************* * *********************************

consensus_5618#0      CGCAGCCGATGGAGGAGGTCGGTTGGAGGCTCCCTATGACGGCGCAGGTGGAGCGGCTGG 539
consensus_5618#1      CGCAGCCGATGGAGGAGGTCGGTTGGAGGCTCCCTATGACGGCGCAGGTGGAGCGGCTGG 211
                      ************************************************************

consensus_5618#0      CGGCTCCCGTCGATCCGGCGGTGGCATAGGTTGAGCGGCAGCGCAGCCGATGGAGGAGGT 599
consensus_5618#1      CGGCTCCCGTCGATCCGGCGGTGGCATAGGTTGAGCGGCAGCGCAGCCGATGGAGGAGGT 271
                      ************************************************************

consensus_5618#0      CGGAGTGCGTAAAATTTCAGGTCAACGCATTCTCCCTCATCTGCCAAGCAAAAGCATAAA 659
consensus_5618#1      CGGAGTGCGTAAAATTTCAGGTCAACGCATTCTCCCTCATCTCGAGAACAAACGAATCGA 331
                      ******************************************    * **** * **  *

consensus_5618#0      AACTTGATGTATAATA-TAAGAAGTAAAACTGAAACAAAGATAGAAAGCAATATGAACCA 718
consensus_5618#1      AACTTTTCTTGTCGTTCTCAATCCTGCTCCTGGGTGGGGCGTCGCCGTCGGCGGAGGCGG 391
                      *****    * *  *  * *    *    ***         * *    *        *  

consensus_5618#0      TGAGTATGTCTAGATAACAGAGAAACCTACTCAGATTTGCTATTTAAATTTGGTTGAGAT 778
consensus_5618#1      TGG--ACTCCTCCATCCCCGG------TGCACAG-CCAACCCTCCACATCC--CCGGGA- 439
                      **   *   **  **  * *       * * ***     *  *  * **      * ** 

consensus_5618#0      AAATGCATATTACAAATAATTAAGGGAGGCAGAGCTGAGGCAAGCTTTAGCTAACAGGTT 838
consensus_5618#1      ------GCGCGACGGCGGAGGCGGCGAAGAGGAGGTGGGCGCGTCGTCGGCGGTTGGATC 493
                                 **     *    * ** *  *** ** *     * *  **     * * 

consensus_5618#0      ATTTCTACTTGATTGCAACGAAAGTATCACTGCGAAGAAATGCTCAGCATCGATAGTGAG 898
consensus_5618#1      GCTACCAC--GATCTGGCC-----TGGCCTTGTGGGGGAG-------------------- 526
                        * * **  ***     *     *  *  ** *  * *                     

consensus_5618#0      CTGTGCAGCCCAGCATCTCAGAAATCAAGGTACATTCGATTTCATCCAATGGAAAATCGC 958
consensus_5618#1      ------------------------------------------------------------
                                                                                  

consensus_5618#0      ATCAGTTGTTCAGTATTTACAGTCGAACCTAAGATTTGGAAATAACAGCCTCAATCTCCT 1018
consensus_5618#1      ------------------------------------------------------------
                                                                                  

consensus_5618#0      ATGGGGAAAATCAGTAACTCCATTTGCTTCAAGTGACTCTATCTAGCATCGGTCTCACTG 1078
consensus_5618#1      ------------------------------------------------------------
                                                                                  

consensus_5618#0      AAATCAACAAGGCAAGGCACAGATCGTTCAAGCGTAACAAAACCAAAGCTATTGCAAGAA 1138
consensus_5618#1      ------------------------------------------------------------
                                                                                  

consensus_5618#0      CATAGGTTGAAACTGAAAGGGAGAGAAGATGAAATCTAGGGTTTGGGTAACAAACACACA 1198
consensus_5618#1      ------------------------------------------------------------
                                                                                  

consensus_5618#0      CCTCGAGAACAAACGAATCGAAACTTTTC 1227
consensus_5618#1      -----------------------------