These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence [TTTTTTTTTTTTTTTTAACAAGGGTTAAACCATGTGAAATTATATCAAAACTTACCAACGGAATACAGATGTGATGCCTATGTCATTTAGCTGCTCTCAAGTACATATATGAAAGAAGAAAGAAGCAGAAAGCATAGAGCAAGACAGTGTAAATCATGAACCTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTCGAGCTCGTCCATAACGTCTTCCGCATCATAAAGCAGATCTCTTAGACTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTTCTTCCTTCGGCAGCAGCAAGCACCCTCTCCACAGCCTTCATCTCAAACTCAAGCCTCTCGATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAAAAGCTCCCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTAACCACATCATTTCTCACCACACCAAGGCGTTGGCAGCAGCAAAAACTGAGGTTGCACAAAGGAGAAACCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAAAAAGACCGAAAGAAACTACCAGGAAGGCAGGAAGCAAGTAACTCTGTTAGCAGGTAGCTTCAACTAACACAGAGGCCCCAGATGAACTTATAACAGCTGCCCGGGAAACTGTGGGAACTGACTT] [+] EMBL CA759675 [TTTTTTTTTTTTTTTTAACAAGGGTTAAACCATGTGAAATTATATCAAAACTTACCAACGGAATACAGATGTGATGCCTATGTCATTTAGCTGCTCTCAAGTACATATATGAAAGAAGAAAGAAGCAGAAAGCATAGAGCAAGACAGTGTAAATCATGAACCTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTCGAGCTCGTCCATAACGTCTTCCGCATCATAAAGCAGATCTCTTAGACTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTTCTTCCTTCGGCAGCAGCAAGCACCCTCTCCACAGCCTTCATCTCAAACTCAAGCCTCTCGATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAAAAGCTCCCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTAACCACATCATTTCTCACCACACCAAGGCGTTGGCAGCAGCAAAAACTGAGGTTGCACAAAGGAGAAACCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAAAAAGACCGAAAGAAACTACCAGGAAGGCAGGAAGCAAGTAACTCTGTTAGCAGGTAGCTTCAACTAACACAGAGGCCCCAGATGAACTTATAACAGCTGCCCGGGAAACTGTGGGAACTGACTT] [-] EMBL AU030778 [ CAGCAAGCACCCTCTCCACAGCCTTCATCTCAAACTCAAGCTTCTCGATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAGAAGCTCCCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTAACCACATCATTTCTCACCACACCAAGGCGTTGGCAGCAGCAGAAACTGTGGTTGCACAAAGGAGAAACCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAGAAAGACCGAAAGAAACTACCn ] consensusID : consensus_5621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [TTCCCCTGNCCAAAGTGGTACCTGCCAATAATTNCCAATGGTTAACCCATGTGAAATTATATCAAACCTTCCCACCGGAATNCAGATGNGATGCCTATGTCATTTAGCTGCTCCTCAAGGTCCATNTATGAAAGAAGAAAGAACNCAGAAAGCATAGAGCAAGCCAGTGTAANTCATGACCNTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTGGAGCTGGTCCATACCGTNTTCCGCATCATAAAGCAGATCTCTTAGNCTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTTATTCCTTGGGCAGCAGCAAGCACCCTCTCCACAGCNTTCATCTCAAACTCAAGCTTCTCGATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAGAAGCTCCCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTACCCCCNTCATTTCTCACCACNCCAAGGCGTTGGCAGCAGCAGAAACTGTGGTTGCACAAAGGAGAACCCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAGAAAGNCCGAAAGAAACTNCCAGGAAGGCAGGAAGCAAGTAACTCNGTNAGCAGC] [-] EMBL CA765334 [TTCCCCTGNCCAAAGTGGTACCTGCCAATAATTNCCAATGGTTAACCCATGTGAAATTATATCAAACCTTCCCACCGGAATNCAGATGNGATGCCTATGTCATTTAGCTGCTCCTCAAGGTCCATNTATGAAAGAAGAAAGAACNCAGAAAGCATAGAGCAAGCCAGTGTAANTCATGACCNTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTGGAGCTGGTCCATACCGTNTTCCGCATCATAAAGCAGATCTCTTAGNCTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTTATTCCTTGGGCAGCAGCAAGCACCCTCTCCACAGCNTTCATCTCAAACTCAAGCTTCTCGATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAGAAGCTCCCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTACCCCCNTCATTTCTCACCACNCCAAGGCGTTGGCAGCAGCAGAAACTGTGGTTGCACAAAGGAGAACCCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAGAAAGNCCGAAAGAAACTNCCAGGAAGGCAGGAAGCAAGTAACTCNGTNAGCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5621#0 -----------------TTTTTTTTTTTTTTTTAACAAGGGTTAAACCATGTGAAATTAT 43 consensus_5621#1 TTCCCCTGNCCAAAGTGGTACCTGCCAATAATTNCCAATGGTTAACCCATGTGAAATTAT 60 * * * ** *** ****** ************** consensus_5621#0 ATCAAAACTTACCAACGGAATACAGATGTGATGCCTATGTCATTTAGCTGCTCTC--AAG 101 consensus_5621#1 ATCAAACCTTCCCACCGGAATNCAGATGNGATGCCTATGTCATTTAGCTGCTCCTCAAGG 120 ****** *** *** ****** ****** ************************ * * consensus_5621#0 TACATATATGAAAGAAGAAAGAA-GCAGAAAGCATAGAGCAAGACAGTGTAAATCATGAA 160 consensus_5621#1 TCCATNTATGAAAGAAGAAAGAACNCAGAAAGCATAGAGCAAGCCAGTGTAANTCATGAC 180 * *** ***************** ****************** ******** ****** consensus_5621#0 CCTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTCGAGCTCGTCCATAACGTCTTCCGCA 220 consensus_5621#1 CNTTTTTCGATCCAATGTTTGAGCCGGTGGTAGTGGAGCTGGTCCATACCGTNTTCCGCA 240 * ******************************** ***** ******* *** ******* consensus_5621#0 TCATAAAGCAGATCTCTTAGACTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTT 280 consensus_5621#1 TCATAAAGCAGATCTCTTAGNCTTCCCAGTGATTGGGCTAGTAGCTTGTTGTCAATACTT 300 ******************** *************************************** consensus_5621#0 CTTCCTTCGGCAGCAGCAAGCACCCTCTCCACAGCCTTCATCTCAAACTCAAGCCTCTCG 340 consensus_5621#1 ATTCCTTGGGCAGCAGCAAGCACCCTCTCCACAGCNTTCATCTCAAACTCAAGCTTCTCG 360 ****** *************************** ****************** ***** consensus_5621#0 ATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAAAAGCTC 400 consensus_5621#1 ATATCTTCAGCAAGCCCAATTTCATGAGTCCAGGCTTCCATCTGTTCAGTGAAGAAGCTC 420 ***************************************************** ****** consensus_5621#0 CCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTAACCAC 460 consensus_5621#1 CCAAGGATGCTTTGCACCAGGCATCCTATCGCAGCATCCACCACACTGCCAACTACCCCC 480 ******************************************************* ** * consensus_5621#0 ATCATTTCTCACCACACCAAGGCGTTGGCAGCAGCAAAAACTGAGGTTGCACAAAGGAGA 520 consensus_5621#1 NTCATTTCTCACCACNCCAAGGCGTTGGCAGCAGCAGAAACTGTGGTTGCACAAAGGAGA 540 ************** ******************** ****** **************** consensus_5621#0 AACCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAAAAAGACCGAAAGAA 580 consensus_5621#1 ACCCAAACAGATGGATTCAAAGAAAGTGAGAATGATGATGCATCAGAAAGNCCGAAAGAA 600 * ******************************************* **** ********* consensus_5621#0 ACTACCAGGAAGGCAGGAAGCAAGTAACTCTGTTAGCAGGTAGCTTCAACTAACACAGAG 640 consensus_5621#1 ACTNCCAGGAAGGCAGGAAGCAAGTAACTCNGTNAGCAGC-------------------- 640 *** ************************** ** ***** consensus_5621#0 GCCCCAGATGAACTTATAACAGCTGCCCGGGAAACTGTGGGAACTGACTT 690 consensus_5621#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||