These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [TGGCGGCGGAGATTGACCTCGTCCTCGCACGCCGGAGTCGCCGAGTTCATCCTGCCGCAGCCCTCGCGCGGGTGCTCGGGTGGGGGAAGCCTCTAAACCGTACGGCGTCGTGTGACTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGGTCTCTACGAAGGGGAGGAAATGAAGGGCTTCCAGCAGATCAGCTCGCGGGGAGGTTCAGAGACCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTGGAGCTACTAGATTTCCTGATGTATTGGAGTACCTTGACGAAGCATGGGCTGGAAAGTTGTTTTTGGTGGTGATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTAGCAGCTGAACAGTTTGGCTGGTCTTGCATTGTGCCTGTCAGATTAGTGCTGTACTTGATGCACTGTAGTCGTTTATGCATGAAATGAAATACAGAACCATATGCAGATTGCAGAACAAATTACTTTCCTTCTAAATAGGGTGAGATATGCTAGGTAAACCTTATTACTTTGTGGTGCTGTTTGACAATGTA] [+] EMBL CA752632 [TGGCGGCGGAGATTGACCTCGTCCTCGCACGCCGGAGTCGCCGAGTTCATCCTGCCGCAGCCCTCGCGCGGGTGCTCGGGTGGGGGAAGCCTCTAAACCGTACGGCGTCGTGTGACTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGGTCTCTACGAAGGGGAGGAAATGAAGGGCTTCCAGCAGATCAGCTCGCGGGGAGGTTCAGAGACCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTGGAGCTACTAGATTTCCTGATGTATTGGAGTACCTTGACGAAGCATGGGCTGGAAAGTTGTTTTTGGTGGTGATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTAGCAGCTGAACAGTTTGGCTGGTCTTGCATTGTGCCTGTCAGATTAGTGCTGTACTTGATGCACTGTAGTCGTTTATGCATGAAATGAAATACAGAACCATATGCAGATTGCAGAACAAATTACTTTCCTTCTAAATAGGGTGAGATATGCTAGGTAAACCTTATTACTTTGTGGTGCTGTTTGACAATGTA] consensusID : consensus_5643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [GTCGGGGGGTCGGCCGCCCCGGACGGCGCCGCCGCCCACCGCCGATCGCCGTTGGTAGTGGTATGGTGTGGCAGCAGCGGCGGAGATTGGCCTCGTCCTCGCACGCCGGAGTCGCCGAGTTCATCCTGCCGCGGCCCGCGGGCCCTCGCTCGGGTGCTCGGGTCGGGGGAATCCTCTAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCGAGCTACTAGATTTTCTGATAATGGCAATTTTATTAGGTTCTTAATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATAGGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTGAAATGGAGAATCATAGTCGT] [+] EMBL AK107798 [GTCGGGGGGTCGGCCGCCCCGGACGGCGCCGCCGCCCACCGCCGATCGCCGTTGGTAGTGGTATGGTGTGGCAGCAGCGGCGGAGATTGGCCTCGTCCTCGCACGCCGGAGTCGCCGAGTTCATCCTGCCGCGGCCCGCGGGCCCTCGCTCGGGTGCTCGGGTCGGGGGAATCCTCTAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCGAGCTACTAGATTTTCTGATAATGGCAATTTTATTAGGTTCTTAATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATAGGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTGAAATGGAGAATCATAGTCGT] consensusID : consensus_5643#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [CGCGGACGCTGGTGCNATNCGNGGTGCTCGGGTCGGGGGAATCCTCTAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAAATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCGAGCTACTAGATTTTCTGATAATGGCAATTTTATTAGGTTCTTAATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATAGGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTGAAATGGA] [+] EMBL AU092616 [CGCGGACGCTGGTGCNATNCGNGGTGCTCGGGTCGGGGGAATCCTCTAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAAATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCGAGCTACTAGATTTTCTGATAATGGCAATTTTATTAGGTTCTTAATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATAGGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTGAAATGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5643#1 GTCGGGGGGTCGGCCGCCCCGGACGGCGCCGCCGCCCACCGCCGATCGCCGTTGGTAGTG 60 consensus_5643#2 ------------------------------------------------------------ consensus_5643#0 ------------------------------------------------------------ consensus_5643#1 GTATGGTGTGGCAGCAGCGGCGGAGATTGGCCTCGTCCTCGCACGCCGGAGTCGCCGAGT 120 consensus_5643#2 ------------------------------------------------------------ consensus_5643#0 --------------TGGCGGCGGAGATTGACCTCGTCCTCGCACGCCGGAGTCGCCGAGT 46 consensus_5643#1 TCATCCTGCCGCGGCCCGCGGGCCCTCGCTCGGGTGCTCGGGTCGGGGGAATCCTCTAAA 180 consensus_5643#2 ---------CGCGGAC-GCTGGTGCNATNCGNGGTGCTCGGGTCGGGGGAATCCTCTAAA 50 consensus_5643#0 TCATCCTGCCGCAGCC--------CTCGCGCGGGTGCTCGGGT-GGGGGAAGCCTCTAAA 97 *** * * * *********** ******* ******** consensus_5643#1 CCGTACGGCGTCGTGT---------CCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTA 231 consensus_5643#2 CCGTACGGCGTCGTGT---------CCGCGAGGGCCGCCGTACCAAATGCTGCTCAAGTA 101 consensus_5643#0 CCGTACGGCGTCGTGTGACTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTA 157 **************** ******************** ************** consensus_5643#1 GCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCA 291 consensus_5643#2 GCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCA 161 consensus_5643#0 GCCCGGCGTGCATCTCGTTAGAGGTCTCTACGAAGGGGAGGAAATGAAGGGCTTCCAGCA 217 *********************** *** ************** ***** ********** consensus_5643#1 GA--GGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAG 349 consensus_5643#2 GA--GGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAG 219 consensus_5643#0 GATCAGCTCGCGGGGAGGTTCAGAGACCCGACCACACCACATTGGTCATCCCTAAGAAAG 277 ** ********************* ********************************* consensus_5643#1 CGTGGAGGCGTCGAGCTACTAGATTTTCTGATA----ATGGCAATTTTATTAGGTTCTTA 405 consensus_5643#2 CGTGGAGGCGTCGAGCTACTAGATTTTCTGATA----ATGGCAATTTTATTAGGTTCTTA 275 consensus_5643#0 CGTGGAGGCGTGGAGCTACTAGATTTCCTGATGTATTGGAGTACCTTGACGAAGCATGGG 337 *********** ************** ***** * * ** * * * consensus_5643#1 ATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATA 465 consensus_5643#2 ATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATA 335 consensus_5643#0 CTGGAAAGTTGTTTTTGGTGGTGATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTA 397 * ***** ** * *** * * * * * * ** consensus_5643#1 GGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAA--TGG 523 consensus_5643#2 GGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAA--TGG 393 consensus_5643#0 GCAGCTGAACAGTTTGGCTGGTCTTGCATTGT--GCCTGTCAGATTAGTGCTGTACTTGA 455 * * *** * * * * ** * * ** * * * ** consensus_5643#1 TGAAATGGAGAATCATAGTCGT-------------------------------------- 545 consensus_5643#2 TGAAATGGA--------------------------------------------------- 402 consensus_5643#0 TGCACTGTAGTCGTTTATGCATGAAATGAAATACAGAACCATATGCAGATTGCAGAACAA 515 ** * ** * consensus_5643#1 ------------------------------------------------------------ consensus_5643#2 ------------------------------------------------------------ consensus_5643#0 ATTACTTTCCTTCTAAATAGGGTGAGATATGCTAGGTAAACCTTATTACTTTGTGGTGCT 575 consensus_5643#1 ------------- consensus_5643#2 ------------- consensus_5643#0 GTTTGACAATGTA 588 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||