cluster # 565

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Oryza sativa
cluster # 565 cluster # 565 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_565#0 length = 707 sequences # 1

consensus_565#1 length = 377 sequences # 1

consensusID : consensus_565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 707
fasta sequence

                              [CAGAAGGATCCTGATGACACAGAAATCAGGAAGAATACTGTCAGAGTAGTGATAAACCAATTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACATCTGGAAGCAACAATGTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGATTATCTGATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAGGATGGTGGTGACTTGGAGCACAAAGAGAAAGTAAGGCGCAGACAGAAACATATTCCACCATGGACTCGGAAAGAAATCTTGGATGAAATACTTCTATCCAATCGGACCTTAGATCCTAGAGAAATTTTTGAACGAAAGTGCTCTTTCAGTTTATCTGACGTTCTTGCACCCCCCATTCCACAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAAATGTACAGGCAAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGCGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTTTGCTGAAGATCTACGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCG]

[+] EMBL AK060215             [CAGAAGGATCCTGATGACACAGAAATCAGGAAGAATACTGTCAGAGTAGTGATAAACCAATTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACATCTGGAAGCAACAATGTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGATTATCTGATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAGGATGGTGGTGACTTGGAGCACAAAGAGAAAGTAAGGCGCAGACAGAAACATATTCCACCATGGACTCGGAAAGAAATCTTGGATGAAATACTTCTATCCAATCGGACCTTAGATCCTAGAGAAATTTTTGAACGAAAGTGCTCTTTCAGTTTATCTGACGTTCTTGCACCCCCCATTCCACAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAAATGTACAGGCAAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGCGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTTTGCTGAAGATCTACGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCG]




>consensus_565#0
CAGAAGGATCCTGATGACACAGAAATCAGGAAGAATACTGTCAGAGTAGTGATAAACCAA
TTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACATCTGGAAGCAACAAT
GTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGA
TTATCTGATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAG
GATGGTGGTGACTTGGAGCACAAAGAGAAAGTAAGGCGCAGACAGAAACATATTCCACCA
TGGACTCGGAAAGAAATCTTGGATGAAATACTTCTATCCAATCGGACCTTAGATCCTAGA
GAAATTTTTGAACGAAAGTGCTCTTTCAGTTTATCTGACGTTCTTGCACCCCCCATTCCA
CAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACAT
CGCTGAGCTCCTTGTTTAGTAACAAAATGTACAGGCAAATCTCAACATTCCTACTGGTAG
TGATACATGTTACTCAAGCGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCA
GATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTTTGCTGAAGATCTACGGA
ATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCG

consensusID : consensus_565#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [GACTACCCGCTGAGTTTAAGCATATAAATAAGCCGGAGGAGAAGAAACTTACGAGGATTCCCCTAGTAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAATGTACAGGCAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGTGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTATGCTGAAGATCTTCGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCGACCTTCTTTGATGCTCGTGCAAAAAA]

[+] EMBL BI796122             [GACTACCCGCTGAGTTTAAGCATATAAATAAGCCGGAGGAGAAGAAACTTACGAGGATTCCCCTAGTAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACATCGCTGAGCTCCTTGTTTAGTAACAAATGTACAGGCAATCTCAACATTCCTACTGGTAGTGATACATGTTACTCAAGTGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTATGCTGAAGATCTTCGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCGACCTTCTTTGATGCTCGTGCAAAAAA]




>consensus_565#1
GACTACCCGCTGAGTTTAAGCATATAAATAAGCCGGAGGAGAAGAAACTTACGAGGATTC
CCCTAGTAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTA
CAACATCGCTGAGCTCCTTGTTTAGTAACAAATGTACAGGCAATCTCAACATTCCTACTG
GTAGTGATACATGTTACTCAAGTGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTA
TGCAGATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTATGCTGAAGATCTT
CGGAATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCGACCTTCTTT
GATGCTCGTGCAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_565#0      CAGAAGGATCCTGATGACACAGAAATCAGGAAGAATACTGTCAGAGTAGTGATAAACCAA 60
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      TTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACATCTGGAAGCAACAAT 120
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      GTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGA 180
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      TTATCTGATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAG 240
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      GATGGTGGTGACTTGGAGCACAAAGAGAAAGTAAGGCGCAGACAGAAACATATTCCACCA 300
consensus_565#1      ------------------------------------------------------------
                                                                                 

consensus_565#0      TGGACTCGGAAAGAAATCTTGGATGAAATACTTCTATCCAATCGGACCTTAGATCCTAGA 360
consensus_565#1      --------------------------------------------------GACTACCCGC 10
                                                                          * *  * 

consensus_565#0      GAAATTTTTGAACGAAAGTGCTCTTTCAGTTTATCTGACGTTCTTGCACCCCCCATTCCA 420
consensus_565#1      TGAGTTTAAGCATATAAATAAGCCGG-AGGAGAAGAAACTTACGAGGATTCCCC---TAG 66
                       * ***  * *   ** *   *    **   *    ** * *  * *  ****      

consensus_565#0      CAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACAT 480
consensus_565#1      TAACGGCGATTAAATTAGTTGGATATTTCACAACCTTGTGAAAGTGATATTCTACAACAT 126
                      ***********************************************************

consensus_565#0      CGCTGAGCTCCTTGTTTAGTAACAAAATGTACAGGCAAATCTCAACATTCCTACTGGTAG 540
consensus_565#1      CGCTGAGCTCCTTGTTTAGTAACAAA-TGTACAGGCAA-TCTCAACATTCCTACTGGTAG 184
                     ************************** *********** *********************

consensus_565#0      TGATACATGTTACTCAAGCGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCA 600
consensus_565#1      TGATACATGTTACTCAAGTGGCTTTTGCCTTTTGTGGCCTGTGTGTATCTTAGTTATGCA 244
                     ****************** *****************************************

consensus_565#0      GATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTTTGCTGAAGATCTACGGA 660
consensus_565#1      GATGGTAGAAGTCATTTTAAGATGGCTGTATCACCTTTCTTTATGCTGAAGATCTTCGGA 304
                     ****************************************** ************ ****

consensus_565#0      ATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCG------------- 707
consensus_565#1      ATGATCATATCTGTACATAATTTTGCTTCTTTCACAATAAATGATCGACCTTCTTTGATG 364
                     ***********************************************             

consensus_565#0      -------------
consensus_565#1      CTCGTGCAAAAAA 377