These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence [TTTTTTTTTTTGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAAAAAACAAGAAGAACGAAACACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCGGCCGATCCGCCGCCCGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGGAGCGGCGTGCGGCGCGGCGCGGTCGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCAGATATATATGGATGGATGGCGTCGTCGTCGGTCGGACGACGACCCGTCCTTCGCCTGCGTCATCCCCGCCGCGCCCTTCCCTTCCACCGCCGCCGCCGCACGCCTCATCGCCGACGACGCCGCCGACGCCGCGTAACCCCTCGTCGTCGTCGTCGTCACCCTCGCCGCGAGCGCCCGCGCCGCGGCGGCAGCAGCAGCAGAGGTGGAGAGAGCGAGAGCCATCGGATCACTCGATCGGACGGCTGATGGCGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGGTG] [-] EMBL CF327125 [TTTTTTTTTTTGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTG ] [+] EMBL CB964453 [ TTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAAAAAACAAGAAGAACGAAACACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCGGCCGATCCGCCGCCCGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGGAGCGGCGTGCGGCGCGGCGCGGTCGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCAGATATATATGGATGGATGGCGTCGTCGTCGGTCGGACGACGACCCGTCCTTCGCCTGCGTCATCCCCGCCGCGCCCTTCCCTTCCACCGCCGCCGCCGCACGCCTCATCGCCGACGACGCCGCCGACGCCGCGTAACCCCTCGTCGTCGTCGTCGTCACCCTCGCCGCGAGCGCCCGCGCCGCGGCGGCAGCAGCAGCAGAGGTGGAGAGAGCGAGAGCCATCGGATCACTCGATCGGACGGCTGATGGCGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGGTG] consensusID : consensus_5658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [GGGNGGCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATGCACAGTAATGTCCGTAATGTTTAAAATGATTCAACACAAATTTGACGTGAAGCAGATGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTTAAAAA] [+] EMBL AU182131 [GGGNGGCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATGCACAGTAATGTCCGTAATGTTTAAAATGATTCAACACAAATTTGACGTGAAGCAGATGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5658#0 TTTTTTTTTTTGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCA 60 consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 TCACACTCGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAAAAAACAAGAAGAACGAA 120 consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 ACACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCA 180 consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 CACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCG 240 consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 GCCGATCCGCCGCCCGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGG 300 consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 AGCGGCGTGCGGCGCGGCGCGGTCGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCA 360 consensus_5658#1 ------------------------------------------------------------ consensus_5658#0 GATATATATGGATGGATGGCGTCGTCGTCGGTCGGACGACGACCCGTCCTTCGCCTGCGT 420 consensus_5658#1 -------------GGGNGGCCCCCCCTTT--TTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45 ** *** * * * * * ** * * consensus_5658#0 CATCCCCGCCGCGCCCTTCCCTTCCACCGCCGCCGCCGCACGCCTCATCGCCGACGACGC 480 consensus_5658#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 105 * ** ** * * consensus_5658#0 CGCCGACGCCGCGTAACCCCTCGTCGTCGTCGTCGTCACCCTCGCCGCGAGCGCCCGCGC 540 consensus_5658#1 TTTTTTTGATATATGCACAGTAATGTCCGTAATGTTTAAAATGATTCAACACAAATTTGA 165 * * * * * *** * * * * * * consensus_5658#0 CGCGGCGGCAGCAGCAGCAGAGGTGGAGAGAGCGAGAGCCATCGGATCACTCGATCGGAC 600 consensus_5658#1 CGTGA-------AGCAGATGAAATTGAAAG---GAAATTAAACTGATTTATTACTTGTTC 215 ** * ***** ** * ** ** ** * * * *** * * * * consensus_5658#0 GGCTGATGGCGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGGTG----- 645 consensus_5658#1 CATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTTAAAAA 265 * * * * *** * * * * * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||