cluster # 5658

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Oryza sativa
cluster # 5658 cluster # 5658 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5658#0 length = 645 sequences # 2

consensus_5658#1 length = 265 sequences # 1

consensusID : consensus_5658#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 645
fasta sequence

                              [TTTTTTTTTTTGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAAAAAACAAGAAGAACGAAACACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCGGCCGATCCGCCGCCCGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGGAGCGGCGTGCGGCGCGGCGCGGTCGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCAGATATATATGGATGGATGGCGTCGTCGTCGGTCGGACGACGACCCGTCCTTCGCCTGCGTCATCCCCGCCGCGCCCTTCCCTTCCACCGCCGCCGCCGCACGCCTCATCGCCGACGACGCCGCCGACGCCGCGTAACCCCTCGTCGTCGTCGTCGTCACCCTCGCCGCGAGCGCCCGCGCCGCGGCGGCAGCAGCAGCAGAGGTGGAGAGAGCGAGAGCCATCGGATCACTCGATCGGACGGCTGATGGCGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGGTG]

[-] EMBL CF327125             [TTTTTTTTTTTGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB964453             [                          TTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAAAAAACAAGAAGAACGAAACACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCGGCCGATCCGCCGCCCGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGGAGCGGCGTGCGGCGCGGCGCGGTCGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCAGATATATATGGATGGATGGCGTCGTCGTCGGTCGGACGACGACCCGTCCTTCGCCTGCGTCATCCCCGCCGCGCCCTTCCCTTCCACCGCCGCCGCCGCACGCCTCATCGCCGACGACGCCGCCGACGCCGCGTAACCCCTCGTCGTCGTCGTCGTCACCCTCGCCGCGAGCGCCCGCGCCGCGGCGGCAGCAGCAGCAGAGGTGGAGAGAGCGAGAGCCATCGGATCACTCGATCGGACGGCTGATGGCGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGGTG]




>consensus_5658#0
TTTTTTTTTTTGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCA
TCACACTCGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAAAAAACAAGAAGAACGAA
ACACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCA
CACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCG
GCCGATCCGCCGCCCGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGG
AGCGGCGTGCGGCGCGGCGCGGTCGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCA
GATATATATGGATGGATGGCGTCGTCGTCGGTCGGACGACGACCCGTCCTTCGCCTGCGT
CATCCCCGCCGCGCCCTTCCCTTCCACCGCCGCCGCCGCACGCCTCATCGCCGACGACGC
CGCCGACGCCGCGTAACCCCTCGTCGTCGTCGTCGTCACCCTCGCCGCGAGCGCCCGCGC
CGCGGCGGCAGCAGCAGCAGAGGTGGAGAGAGCGAGAGCCATCGGATCACTCGATCGGAC
GGCTGATGGCGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGGTG

consensusID : consensus_5658#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence

                              [GGGNGGCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATGCACAGTAATGTCCGTAATGTTTAAAATGATTCAACACAAATTTGACGTGAAGCAGATGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTTAAAAA]

[+] EMBL AU182131             [GGGNGGCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATGCACAGTAATGTCCGTAATGTTTAAAATGATTCAACACAAATTTGACGTGAAGCAGATGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTTAAAAA]




>consensus_5658#1
GGGNGGCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATG
CACAGTAATGTCCGTAATGTTTAAAATGATTCAACACAAATTTGACGTGAAGCAGATGAA
ATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTAC
GTGGTGAAACCGTGAAAGTTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5658#0      TTTTTTTTTTTGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCA 60
consensus_5658#1      ------------------------------------------------------------
                                                                                  

consensus_5658#0      TCACACTCGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAAAAAACAAGAAGAACGAA 120
consensus_5658#1      ------------------------------------------------------------
                                                                                  

consensus_5658#0      ACACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCA 180
consensus_5658#1      ------------------------------------------------------------
                                                                                  

consensus_5658#0      CACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCG 240
consensus_5658#1      ------------------------------------------------------------
                                                                                  

consensus_5658#0      GCCGATCCGCCGCCCGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGG 300
consensus_5658#1      ------------------------------------------------------------
                                                                                  

consensus_5658#0      AGCGGCGTGCGGCGCGGCGCGGTCGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCA 360
consensus_5658#1      ------------------------------------------------------------
                                                                                  

consensus_5658#0      GATATATATGGATGGATGGCGTCGTCGTCGGTCGGACGACGACCCGTCCTTCGCCTGCGT 420
consensus_5658#1      -------------GGGNGGCCCCCCCTTT--TTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45
                                   **  ***  *  * *   *              *  **    *   *

consensus_5658#0      CATCCCCGCCGCGCCCTTCCCTTCCACCGCCGCCGCCGCACGCCTCATCGCCGACGACGC 480
consensus_5658#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 105
                        *             **   **                     *  *            

consensus_5658#0      CGCCGACGCCGCGTAACCCCTCGTCGTCGTCGTCGTCACCCTCGCCGCGAGCGCCCGCGC 540
consensus_5658#1      TTTTTTTGATATATGCACAGTAATGTCCGTAATGTTTAAAATGATTCAACACAAATTTGA 165
                             *     *   *  *  *   ***  *  * *   *         *      * 

consensus_5658#0      CGCGGCGGCAGCAGCAGCAGAGGTGGAGAGAGCGAGAGCCATCGGATCACTCGATCGGAC 600
consensus_5658#1      CGTGA-------AGCAGATGAAATTGAAAG---GAAATTAAACTGATTTATTACTTGTTC 215
                      ** *        *****  **  * ** **   ** *   * * ***   *   * *  *

consensus_5658#0      GGCTGATGGCGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGGTG----- 645
consensus_5658#1      CATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTTAAAAA 265
                         * *   *    * ***   * * *    *  * *     **