These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGGTGTTTATCCCCCCTAATTAAAATCGAGACCCTGAAATAGCTTAAACACTGGTGGTACCATGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCCTTACCCATGGTTTCAAATCCATGCCTGCGGGAAACAATTACCGCAACACACACAGGAAGTCTGAATTTTATAACATCCATTTTTTTTTTTTTTCTCCCCCCAATTCATTAACATTTTATACATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCCGAAGAGAACCTTTTCCCTTGCCCAATTATTGGTTTCACCAACCTGAACTCATTAAGCTCCTTGAAAAG] [+] EMBL CF298182 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGGTGTTTATCCCCCCTAATTAAAATCGAGACCCTGAAATAGCTTAAACACTGGTGGTACCATGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCCTTACCCATGGTTTCAAATCCATGCCTGCGGGAAACAATTACCGCAACACACACAGGAAGTCTGAATTTTATAACATCCATTTTTTTTTTTTTTCTCCCCCCAATTCATTAACATTTTATACATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCCGAAGAGAACCTTTTCCCTTGCCCAATTATTGGTTTCACCAACCTGAACTCATTAAGCTCCTTGAAAAG] consensusID : consensus_5666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 357 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAACTAAAACACTGGTGGTACCATGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCCTTACCCATGCATTCAAATCCATGCCTGCGGGAAACAATTTCCCCAACACACACAGGAAGTCTGAATTTTATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTTATTAACATTTTATACATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCAGAAGAGAACATTTTTCATTGCCCAATTATTGGTTTTACCAACCTGAACTCATTAAGCTCCTTGAAAAGCCCTGG] [+] EMBL CF318045 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAACTAAAACACTGGTGGTACCATGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCCTTACCCATGCATTCAAATCCATGCCTGCGGGAAACAATTTCCCCAACACACACAGGAAGTCTGAATTTTATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTTATTAACATTTTATACATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCAGAAGAGAACATTTTTCATTGCCCAATTATTGGTTTTACCAACCTGAACTCATTAAGCTCCTTGAAAAGCCCTGG] [+] EMBL CF301702 [ tttttttTGGTGGTACCATGAAAAAGTTTATCCCCCTGGAGTACTGGACATTAAAAATTCACCACTTAACTTACCCCCTTACCCATGCATTCAAATCCATGCCTGCGGGAAACAATTACCACAACACACACAGGAAGTTTGAATTTTATAAAATTCATTTTTTTTTTTTTTCTCCCCCCAATTTATTAACATTTTATACATGCCTACTCCCCaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5666#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCG 60 consensus_5666#1 ----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------- 40 **************************************** consensus_5666#0 GTGTTTATCCCCCCTAATTAAAATCGAGACCCTGAAATAGCTTAAACACTGGTGGTACCA 120 consensus_5666#1 --------------------------------TGAAAAAACTAAAACACTGGTGGTACCA 68 ***** * ** ***************** consensus_5666#0 TGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCC 180 consensus_5666#1 TGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCC 128 ************************************************************ consensus_5666#0 TTACCCATGGTTTCAAATCCATGCCTGCGGGAAACAATTACCGCAACACACACAGGAAGT 240 consensus_5666#1 TTACCCATGCATTCAAATCCATGCCTGCGGGAAACAATTTCCCCAACACACACAGGAAGT 188 ********* **************************** ** ***************** consensus_5666#0 CTGAATTTTATAACATCCATTTTTTTTTTTTTTCTCCCCCCAATTCATTAACATTTTATA 300 consensus_5666#1 CTGAATTTTATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTTATTAACATTTTATA 248 ******************************** ************ ************** consensus_5666#0 CATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCCGAAGAGAACCTTTTCCCTTGCCCAA 360 consensus_5666#1 CATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCAGAAGAGAACATTTTTCATTGCCCAA 308 ********************************** ********* **** * ******** consensus_5666#0 TTATTGGTTTCACCAACCTGAACTCATTAAGCTCCTTGAAAAG------ 403 consensus_5666#1 TTATTGGTTTTACCAACCTGAACTCATTAAGCTCCTTGAAAAGCCCTGG 357 ********** ******************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||