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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence
[CCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACCAAAGTCTGATAAACTGCGTCAGTGGTACTTATCTATGCTTCAAAAGGCTATTAAGGAGAACATTGTTGTCGAGTTGACAAATCTCTATGATCAATTTTTTGTCACTGCAAAAGAATGCAAGATAAAAGTATCTGCAGCTCGCTTGCCATATTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATTATCAACCAACTTCAACTAGAGGGTGATGGTAAGCTGCTGAAGAAGGGGAGAGTAAATAAAATTATCACAAAACGAGCTTTAAAAGCTGCCGGCCACACTGATCTAAGTGGGAATGCTTCAAAAGAGGCTATGCTGATGCAAAAACTTGGAGAAATCATTTGCCCAATTAAGGATGATCTCATCATGGTCCATTTGCAGTATTCGTGCAGTCACTGTTGTACCTTTATGGTGTCTGGAAGACGCTGGGTCTGCAATGAATGCAAAAGTTTTTATATTTGTGACAGGTGTTATAATGCAGAGCAGCGGCTTGAGGAGAAGGAGAGGCACCCAAGTAATAGTAAATGTTTGCATATACTCCACCCAGTTGAAATTGTTGGGGTCTCTGAAGATACCAAGGACAGAGATATTATCTTAGAAAATGAGATCTTTGACACCAGACAGGCATTCCTGAGTTTTTGTCAAGGGTATCATTATCAATATGACACCCTCCGCCGTGCAAAGCATTCCACCATGATGATGCTATACCACCTTCATAATCCAACTGGACCAGCTTTTGTTGCCACATGTAA]
[+] EMBL CB677581 [CCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACCAAAGTCTGATAAACTGCGTCAGTGGTACTTATCTATGCTTCAAAAGGCTATTAAGGAGAACATTGTTGTCGAGTTGACAAATCTCTATGATCAATTTTTTGTCACTGCAAAAGAATGCAAGATAAAAGTATCTGCAGCTCGCTTGCCATATTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATTATCAACCAACTTCAACTAGAGGGTGATGGTAAGCTGCTGAAGAAGGGGAGAGTAAATAAAATTATCACAAAACGAGCTTTAAAAGCTGCCGGCCACACTGATCTAAGTGGGAATGCTTCAAAAGAGGCTATGCTGATGCAAAAACTTGGAGAAATCATTTGCCCAATTAAGGATGATCTCATCATGGTCCATTTGCAGTATTCGTGCAGTCACTGTTGTACCTTTATGGTGTCTGGAAGACGCTGGGTCTGCAATGAATGCAAAAGTTTTTATATTTGTGACAGGTGTTATAATGCAGAGCAGCGGCTTGAGGAGAAGGAGAGGCACCCAAGTAATAGTAAATGTTTGCATATACTCCACCCAGTTGAAATTGTTGGGGTCTCTGAAGATACCAAGGACAGAGATATTATCTTAGAAAATGAGATCTTTGACACCAGACAGGCATTCCTGAGTTTTTGTCAAGGGTATCATTATCAATATGACACCCTCCGCCGTGCAAAGCATTCCACCATGATGATGCTATACCACCTTCATAATCCAACTGGACCAGCTTTTGTTGCCACATGTAA]
consensusID : consensus_5681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 794 fasta sequence
[CAGGAGAGGAAAAGCATTGAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGAGTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGATAGGATATCTTGAATATTGCAAGCAGCGTGGATTCACAAGCTGTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTACCAAGGAGGAGATTGTTGTTGAGCTGACAAATCTATATGACCATTTCTTCATTACTATGGGGGAGTGCAAGGCTAAAGTGACTGCTTCTCGTTTGCCTTACTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATGATCAATCAACTTCGTCAAGAAGAAGATGACCGGAAGCAGCAGAAGAAGGGCAAGACAAAGAAGATTATTACAAAAAGAGCTCTTAAAGCTGCTGGCCACACCGATCTCAGTGGGAATGCTTCCAAGGATGC]
[+] EMBL CB627754 [CAGGAGAGGAAAAGCATTGAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGAGTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGATAGGATATCTTGAATATTGCAAGCAGCGTGGATTCACAAGCTGTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTACCAAGGAGGAGATTGTTGTTGAGCTGACAAATCTATATGACCATTTCTTCATTACTATGGGGGAGTGCAAGGCTAAAGTGACTGCTTCTCGTTTGCCTTACTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATGATCAATCAACTTCGTCAAGAAGAAGATGACCGGAAGCAGCAGAAGAAGGGCAAGACAAAGAAGATTATTACAAAAAGAGCTCTTAAAGCTGCTGGCCACACCGATCTCAGTGGGAATGCTTCCAAGGATGC]
[+] EMBL CB640255 [ GAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGAGTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGATAGGATATCTTGAATATTGCAAGCAGCGTGGATTCACAAGCTGTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTACCAAGGAGGAGATTGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5681#0 CCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACC 60
consensus_5681#1 ------CAGGAGAGGAAAAGCATTGAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGA 54
* *** *** * * ** * ** ** * * * *
consensus_5681#0 AAAGTCTGATAAACTGC------GTCAGTGGTACTTATCTATGCTTCAAAAGGCTATTAA 114
consensus_5681#1 GTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAA 114
** * ** * * * * *** * ** ** * * **
consensus_5681#0 GGAGAACATTGTT--GTCGAGTTGACAAATC--TCTATGATCAATTTTTTGTCACTGCAA 170
consensus_5681#1 GAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAA 174
* *** * * ***** ** * ** * * ****** * * **
consensus_5681#0 A-AGAATGCA---AGATAAAAGTATCTGCAGCTCGCTTGCCATATTTTGATGGAGATTAT 226
consensus_5681#1 ATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGC 234
* **** * * * *** ** * * * * * **** ** *** *
consensus_5681#0 TG--GCCAGGAGCTGCAGAAGATAT---TATCAA--CCAACTTCAACTAGA--------G 271
consensus_5681#1 TCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGG 294
* ** * * * ** * * * *** * *** ** * *
consensus_5681#0 GGTGATGGTAAGCTG----CTGAAGAAGGGGAGAGTAAATAAAATTATCACAAAACGAGC 327
consensus_5681#1 CCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAAT---T 351
*** ** * *** *** * * *** ** ****** ***
consensus_5681#0 TTTAAAAGCTGCCGGCCACACTGATCTAAGTGGGAATGCTTCAAAAGAGGCTA--TGCTG 385
consensus_5681#1 CTGATAGGATATCTTGAATATTG---CAAGCAGCGTGGATTCACAAGCTGTTACATATGG 408
* * * * * * * * ** *** * * **** *** * ** * *
consensus_5681#0 ATGCAAAAACTTGGAGAAATCATTTGCCCAATTAAGGATGATCTCATCATGGTCCATTTG 445
consensus_5681#1 GCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTAC--TGCCATCCTGAG--ATTCA 464
* ** * * ** *** * * * **** ** ***
consensus_5681#0 CAGTATTCGTGCAGTCACTGTTGTACCTTTATGGTGTCTGGAAGACGCTGGGTCTGCAAT 505
consensus_5681#1 GAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTAC 524
* * ** * * * **** * * * ** *
consensus_5681#0 GAATGCAAAAGTTTTTATATTTGTGACAGGTGTTATAATGCAGAGCAGCGGCTTGAGGAG 565
consensus_5681#1 CAAGGAGGAGATTGTTGTTGAGCTGACAAAT------CTATATGACCATTTCTTCATTAC 578
** * * ** ** * ***** * * * * *** * *
consensus_5681#0 AAGGAGAGGCACCCAAGTAATAGTAAATGTTTG-CATATACTCCACCCAGTTGAA-ATTG 623
consensus_5681#1 TATGGGGGAGTGCAAGGCTAAAGTGACTGCTTCTCGTTTGCCTTACTTTGATGGAGATTA 638
* * * * * * * * *** * ** ** * * * * ** * ** * ***
consensus_5681#0 TTGGGGTCTCTGAAGATACCAAGGACA-GAGATATTATCTTAGAAAATGAGATCTTTGAC 682
consensus_5681#1 TTGG----CCAGGAGCTGCAGAAGATATGATCAATCAACTTCGTCAAGAAGAAGAT-GAC 693
**** * * ** * * * ** * ** ** * *** * ** *** * ***
consensus_5681#0 ACCAGACAGGCATTCCTGAGTTTTTGTCAAGGGTATCATTATCAATATGACACCCTCCGC 742
consensus_5681#1 CGGAAGCAG-CAGAAGAAGGGCAAGACAAAGAAGATTATTACAAAAAGAGCTCTTAAAGC 752
* *** ** * *** ** **** ** * * * **
consensus_5681#0 CGT--GCAAAGCATTCCACCATGATGATGCTATACCACCTTCATAATCCAACTGGACCAG 800
consensus_5681#1 TGCTGGCCACACCGATCTCAGTGGGAATGCTTCCAAGGATGC------------------ 794
* ** * * * * ** ***** * *
consensus_5681#0 CTTTTGTTGCCACATGTAA 819
consensus_5681#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||