These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1918 fasta sequence [GAGTGAGGCAAAGAGGAAGTCAGGGAACGGAAGGGTTGAGATGGAGATCAGCACAGTGCTGGGCGCAATATTGGCAGAGTACGCGGTCACCTTGGTGGCCATGGCTGTGGGTTTCCTGGTGGTAGGCTACTTGTACGAGCCATACTGGAAAGTGCGGCACGTGCCAGGTCCCGTGCCCCTGCCGCTCATCGGCCACCTCCACCTGCTCGCCATGCACGGGCCGGACGTGTTCTCAGTGCTCACGAGGAAGTACGGCCCCATCTTCAGGTTTCACATGGGAAGGCAACCGTTGGTCATGGTGGCGGATGCTGAGTTGTGCAAGGAAGTGGGCGTGAAGAAATTCAAGAACTTCCCCAACCGAAGTATGCCCTCACCCATTACCAATTCTCCTGTTCATCAGAAGGGCCTATTCTTCACAAGGGGCATTTTATAATATGGTCGAACTTAATGATATTTGGCATAAGATAAAACTCAAATGATCACTCGAAGAAGTAAAAGTGTTCGTGCATGCACACCGTACCGGGCCAGCTTCCATCCTTGTGGTTCGAGGTGGACGACTATGCGAAACATGATCCTCTCCATCTACCAGCCGTCGCACCTGGCCACCCTGATCCCCAGCATGGAGTCGTGTATTGAACGCGCGGCCGAGAATCTCGAGGGCCAAGAGGAGATCAACTTCTCCAAGCTCTCTCTCAGCTTCACCACTGACGTCCTCGGGCAGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACGAGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAGGCATCATCGGAGTTCATCAAGATGCACGTGCACGCGACCACGTCTCTAAAAATGGACATGTCCGGCTCGCTCTCCATCATCGTCGGCCAGCTCCTGCCGTTCCTCCATGAACCGTTCCGGCAGGTTCTCAAGAGGCTTCGCTGGACGGCGGACCACGAGATCGACCGCGTGAACCTCACGCTCGGGAGACAGCTTGACAGGATCGTCGCCGAGCGGACGGCTGCAATGAAGCGAGACCGGCGGCGCTGCAGCAGCGCAAGGACTTCCTGTCCGTCATGCTCACGGCGAGAGAGTCGAACAAATCCTCGAGGGAGCTGCTCACGCCGGACTACATCAGCGCGCTCACTTACGAGCACCTCCTCGCCGGGTCGGCCACGACGGCGTTCACTCTCACCACGGCGCTCTACCTCGTCGCCAAGCACCCGGAGGTGGAGGAGAAGCTGCTCAGAGAGATCGACGGGTTCGGACCCCGCGACCGCGTGCCGACGGCCGAGGATCTGCAGACCAAATTCCCCTACCTTGATCAGGTCCTGAAGGAAGCGATGAGATATTACCCCTCATCGCCATTGATAGCAAGGGAACTGAACCAACAGCTCGAAATTGGAGGATATCCCCTTCCAAAGGGAACATGGGTGTGGATGGCACCTGGTGTCCTAGGAAAGGATCCCAAAAATTTCCCAGAGCCAGAGGTGTTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCCGTACGCGCTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTCGCCATACAGGAGATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTCGCCCAGCATGGAGTCTCCTCCTGAGTTTGTGTACTCGATCGTCTCCAATTTCAAGAACGGCGCCAAGCTTCAGGTCATCAAGAGGCATATATAATGCTTAATCACATCATCAGGAGAACTATTCGTTTGGATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTTGTACTGTACTTGTTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAAC] [+] EMBL AK067688 [GAGTGAGGCAAAGAGGAAGTCAGGGAACGGAAGGGTTGAGATGGAGATCAGCACAGTGCTGGGCGCAATATTGGCAGAGTACGCGGTCACCTTGGTGGCCATGGCTGTGGGTTTCCTGGTGGTAGGCTACTTGTACGAGCCATACTGGAAAGTGCGGCACGTGCCAGGTCCCGTGCCCCTGCCGCTCATCGGCCACCTCCACCTGCTCGCCATGCACGGGCCGGACGTGTTCTCAGTGCTCACGAGGAAGTACGGCCCCATCTTCAGGTTTCACATGGGAAGGCAACCGTTGGTCATGGTGGCGGATGCTGAGTTGTGCAAGGAAGTGGGCGTGAAGAAATTCAAGAACTTCCCCAACCGAAGTATGCCCTCACCCATTACCAATTCTCCTGTTCATCAGAAGGGCCTATTCTTCACAAGGGGCATTTTATAATATGGTCGAACTTAATGATATTTGGCATAAGATAAAACTCAAATGATCACTCGAAGAAGTAAAAGTGTTCGTGCATGCACACCGTACCGGGCCAGCTTCCATCCTTGTGGTTCGAGGTGGACGACTATGCGAAACATGATCCTCTCCATCTACCAGCCGTCGCACCTGGCCACCCTGATCCCCAGCATGGAGTCGTGTATTGAACGCGCGGCCGAGAATCTCGAGGGCCAAGAGGAGATCAACTTCTCCAAGCTCTCTCTCAGCTTCACCACTGACGTCCTCGGGCAGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACGAGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAGGCATCATCGGAGTTCATCAAGATGCACGTGCACGCGACCACGTCTCTAAAAATGGACATGTCCGGCTCGCTCTCCATCATCGTCGGCCAGCTCCTGCCGTTCCTCCATGAACCGTTCCGGCAGGTTCTCAAGAGGCTTCGCTGGACGGCGGACCACGAGATCGACCGCGTGAACCTCACGCTCGGGAGACAGCTTGACAGGATCGTCGCCGAGCGGACGGCTGCAATGAAGCGAGACCGGCGGCGCTGCAGCAGCGCAAGGACTTCCTGTCCGTCATGCTCACGGCGAGAGAGTCGAACAAATCCTCGAGGGAGCTGCTCACGCCGGACTACATCAGCGCGCTCACTTACGAGCACCTCCTCGCCGGGTCGGCCACGACGGCGTTCACTCTCACCACGGCGCTCTACCTCGTCGCCAAGCACCCGGAGGTGGAGGAGAAGCTGCTCAGAGAGATCGACGGGTTCGGACCCCGCGACCGCGTGCCGACGGCCGAGGATCTGCAGACCAAATTCCCCTACCTTGATCAGGTCCTGAAGGAAGCGATGAGATATTACCCCTCATCGCCATTGATAGCAAGGGAACTGAACCAACAGCTCGAAATTGGAGGATATCCCCTTCCAAAGGGAACATGGGTGTGGATGGCACCTGGTGTCCTAGGAAAGGATCCCAAAAATTTCCCAGAGCCAGAGGTGTTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCCGTACGCGCTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTCGCCATACAGGAGATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTCGCCCAGCATGGAGTCTCCTCCTGAGTTTGTGTACTCGATCGTCTCCAATTTCAAGAACGGCGCCAAGCTTCAGGTCATCAAGAGGCATATATAATGCTTAATCACATCATCAGGAGAACTATTCGTTTGGATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTTGTACTGTACTTGTTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAAC] consensusID : consensus_5683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [CGAATTCGGCACGAGGGGATCCCAAAAATTTCCCAGAGCCAGAGGTGTTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCCGTACGCGCTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTCGCCATACAGGAGATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTCGCCCAGCATGGAGTCTCCTCCTGAGTTTGTGTACTCGATCGTCTCCAATTTCAAGAACGGCGCCAAGCTTCAGGTCATCAAGAGGCATATATAATGCTTAATCACATCATCAGGAGAACTATTCGTTTGGATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTTGTACTGTACTTGTTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAACCACAGCTAGCAAATCTCCGAGGCATAAAGTNTCTTATGAGTAAATATCCGAATATAAGATNTTTCTTCTCATAAAGACCTCTATAGGTAGAGGAGCAGGCCGTGGGACATATCATGTGGTACGATGAAAATAGATCTAATAAAGACCAGTATGATGTTCGCGTTAAAANAAAAAAA] [+] EMBL CA753575 [CGAATTCGGCACGAGGGGATCCCAAAAATTTCCCAGAGCCAGAGGTGTTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCCGTACGCGCTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTCGCCATACAGGAGATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTCGCCCAGCATGGAGTCTCCTCCTGAGTTTGTGTACTCGATCGTCTCCAATTTCAAGAACGGCGCCAAGCTTCAGGTCATCAAGAGGCATATATAATGCTTAATCACATCATCAGGAGAACTATTCGTTTGGATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTTGTACTGTACTTGTTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAACCACAGCTAGCAAATCTCCGAGGCATAAAGTNTCTTATGAGTAAATATCCGAATATAAGATNTTTCTTCTCATAAAGACCTCTATAGGTAGAGGAGCAGGCCGTGGGACATATCATGTGGTACGATGAAAATAGATCTAATAAAGACCAGTATGATGTTCGCGTTAAAANAAAAAAA] consensusID : consensus_5683#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [CCGAGAATCTCGAGGGCCAAGAGGAGATCAACTTCTCCAAGCTCTCTCTCAGCTTCACCACTGACGTCCTCGGGCAGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACGAGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAGGCATCATTCGGAGTTCATCAAAGATGCACGTGCACGCGACCACGTCTTTAAAAATGGACATGTCCGGCTCGCTCTCCATCATTCGTCGGNCAGCTCCTGCCGTTCCTTCATGAACCGTTCCGGGAGGTTTCTTCAAAGAAGGCTTTCGCTTGGGACGGGCGGACCANCGAAGATCGAACGGNGTGAACCCTCACCGCTTCGGGAGAACAGCTTTGACAGGGATTCGTCGNCGAACCGGACGGGTTGNAATG] [+] EMBL AU184539 [CCGAGAATCTCGAGGGCCAAGAGGAGATCAACTTCTCCAAGCTCTCTCTCAGCTTCACCACTGACGTCCTCGGGCAGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACGAGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAGGCATCATTCGGAGTTCATCAAAGATGCACGTGCACGCGACCACGTCTTTAAAAATGGACATGTCCGGCTCGCTCTCCATCATTCGTCGGNCAGCTCCTGCCGTTCCTTCATGAACCGTTCCGGGAGGTTTCTTCAAAGAAGGCTTTCGCTTGGGACGGGCGGACCANCGAAGATCGAACGGNGTGAACCCTCACCGCTTCGGGAGAACAGCTTTGACAGGGATTCGTCGNCGAACCGGACGGGTTGNAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5683#0 GAGTGAGGCAAAGAGGAAGTCAGGGAACGGAAGGGTTGAGATGGAGATCAGCACAGTGCT 60 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 GGGCGCAATATTGGCAGAGTACGCGGTCACCTTGGTGGCCATGGCTGTGGGTTTCCTGGT 120 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 GGTAGGCTACTTGTACGAGCCATACTGGAAAGTGCGGCACGTGCCAGGTCCCGTGCCCCT 180 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 GCCGCTCATCGGCCACCTCCACCTGCTCGCCATGCACGGGCCGGACGTGTTCTCAGTGCT 240 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 CACGAGGAAGTACGGCCCCATCTTCAGGTTTCACATGGGAAGGCAACCGTTGGTCATGGT 300 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 GGCGGATGCTGAGTTGTGCAAGGAAGTGGGCGTGAAGAAATTCAAGAACTTCCCCAACCG 360 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 AAGTATGCCCTCACCCATTACCAATTCTCCTGTTCATCAGAAGGGCCTATTCTTCACAAG 420 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 GGGCATTTTATAATATGGTCGAACTTAATGATATTTGGCATAAGATAAAACTCAAATGAT 480 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 CACTCGAAGAAGTAAAAGTGTTCGTGCATGCACACCGTACCGGGCCAGCTTCCATCCTTG 540 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 --------------------CGAATTCGGCACGAGGGGATCCCAAAAATTTCCCAGAGCC 40 consensus_5683#0 TGGTTCGAGGTGGACGACTATGCGAAACATGATCCTCTCCATCTACCAGCCGTCGCACCT 600 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 AGAGGTGTTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCC 100 consensus_5683#0 GGCCACCCTGATCCCCAGCATGGAGTCGTGTATTGAACGCGCGGCCGAGAATCTCGAGGG 660 consensus_5683#2 --------------------------------------------CCGAGAATCTCGAGGG 16 consensus_5683#1 GTACGCGCTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTC---GC 157 * **** ** * consensus_5683#0 CCAAGAGGAGATCAACTTCTCCAAGCTCT-CTCTCAGCTTCACCACTGACGTCCTCGGGC 719 consensus_5683#2 CCAAGAGGAGATCAACTTCTCCAAGCTCT-CTCTCAGCTTCACCACTGACGTCCTCGGGC 75 consensus_5683#1 CATACAGGAGATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTC 217 * * ******* ** ** ** * ** ** * * *** ** * ** * * consensus_5683#0 AGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACG 779 consensus_5683#2 AGGCAGCGTTCGGAACGGACTTTGGCCTGTCGAAAAAGTTGGCCTCGTCGGACGACGACG 135 consensus_5683#1 GCCCAGCATGGAGTCTCCTCCTGAGTTTGT-GTACTCGATCGTCTCCAATTTCAAGAACG 276 **** * * * * * *** * * * * * *** * * *** consensus_5683#0 AGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAG-GCATCAT-CGGAGTT 837 consensus_5683#2 AGGACACCCGCAAGATCGCGGCCGATACCTGCGCGGAGGCCAAG-GCATCATTCGGAGTT 194 consensus_5683#1 GCGCCAAGCTTCAGGTCATCAA-GAGGCATATATAATGCTTAATCACATCATCAGGAGAA 335 * ** * ** ** ** * * * ** ****** **** consensus_5683#0 CATCAA-GATGCACGTGCACGCGACCACGTCTCTAAAAATGGACATGTCCGGCTCGCTCT 896 consensus_5683#2 CATCAAAGATGCACGTGCACGCGACCACGTCTTTAAAAATGGACATGTCCGGCTCGCTCT 254 consensus_5683#1 CTATTCGTTTGGATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTT 395 * ** * * * * * * ** * * * * * * * * consensus_5683#0 CCATCAT---------CGTCGGCCAGCTCCTGCCGTTCC-------TCCATGAACCGTT- 939 consensus_5683#2 CCATCAT--------TCGTCGGNCAGCTCCTGCCGTTCC-------TTCATGAACCGTT- 298 consensus_5683#1 GTACTGTACTTGTTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAACCACAG 455 * * ** *** *** * ** ** * * ******* consensus_5683#0 CCGGCAGGTTCTC------AAGAGGCTT-CGCT--GGACGG-CGGACCAC--GAGATCGA 987 consensus_5683#2 CCGGGAGGTTTCTTCA--AAGAAGGCTTTCGCTTGGGACGGGCGGACCANCGAAGATCGA 356 consensus_5683#1 CTAGCAAATCTCCGAGGCATAAAGTNTCTTATGAGTAAATATCCGAATATAAGATNTTTC 515 * * * * ** * * * ** * * * consensus_5683#0 CCG-CGTGAA--CC-TCACG--CTCGGGAGA-CAGCTT-GACAGGA--TCGTCGCCGAGC 1037 consensus_5683#2 ACGGNGTGAA--CCCTCACCGCTTCGGGAGAACAGCTTTGACAGGGATTCGTCGNCGAAC 414 consensus_5683#1 TTCTCATAAAGACCTCTATAGGTAGAGGAGCAGGCCGTGGGACATATCATGTGGTACGAT 575 * ** ** * **** * * * ** * consensus_5683#0 -GGACGG-CTGCAATGAAGCGAGACCGGCGGCGCTGCAGCAGCGCAAGGACTTCCTGTCC 1095 consensus_5683#2 CGGACGGGTTGNAATG-------------------------------------------- 430 consensus_5683#1 GAAAATAGATCTAATAAAGACCAGTATGATGTTCGCGTTAAAANAAAAAAA--------- 626 * * *** consensus_5683#0 GTCATGCTCACGGCGAGAGAGTCGAACAAATCCTCGAGGGAGCTGCTCACGCCGGACTAC 1155 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 ATCAGCGCGCTCACTTACGAGCACCTCCTCGCCGGGTCGGCCACGACGGCGTTCACTCTC 1215 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 ACCACGGCGCTCTACCTCGTCGCCAAGCACCCGGAGGTGGAGGAGAAGCTGCTCAGAGAG 1275 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 ATCGACGGGTTCGGACCCCGCGACCGCGTGCCGACGGCCGAGGATCTGCAGACCAAATTC 1335 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 CCCTACCTTGATCAGGTCCTGAAGGAAGCGATGAGATATTACCCCTCATCGCCATTGATA 1395 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 GCAAGGGAACTGAACCAACAGCTCGAAATTGGAGGATATCCCCTTCCAAAGGGAACATGG 1455 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 GTGTGGATGGCACCTGGTGTCCTAGGAAAGGATCCCAAAAATTTCCCAGAGCCAGAGGTG 1515 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 TTCCGGCCGGAGCGCTTCGACCCAAACGGCGAGGAAGAGAAGAGGAGGCACCCGTACGCG 1575 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 CTCTTCCCGTTCGGGATAGGGCCGAGGGCGTGCATCGGCCAGAAGTTCGCCATACAGGAG 1635 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 ATGAAATTGTCAGCGATCCACTTCTACCGTCATTACGTATTTCGGCCCTCGCCCAGCATG 1695 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 GAGTCTCCTCCTGAGTTTGTGTACTCGATCGTCTCCAATTTCAAGAACGGCGCCAAGCTT 1755 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 CAGGTCATCAAGAGGCATATATAATGCTTAATCACATCATCAGGAGAACTATTCGTTTGG 1815 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 ATTTTGGGTATTGCGCATATTATTAAGTACTCGTTTTCAGTTTATGTTGTACTGTACTTG 1875 consensus_5683#2 ------------------------------------------------------------ consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 TTTTCGCCGGGCAGTCCGTGTTGTACTCGTAATATATATGAAC 1918 consensus_5683#2 ------------------------------------------- consensus_5683#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||