cluster # 5703

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Oryza sativa
cluster # 5703 cluster # 5703 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5703#0 length = 698 sequences # 2

consensus_5703#1 length = 594 sequences # 1

consensusID : consensus_5703#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 698
fasta sequence

                              [ATATATCTTCCAATATACCCTCAAGAGGGACTTTCTCAGAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAAAAAAATAGCATAGCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAGCTAAGGATTAATTGGGCAGGACAAGATGCGTTATTTAGTACTGTGCAGAGGCATCTTGGCACGAGTACGTGTTATGCAGAAGGAAGAGTAAAATATGTCACTCCTAGATGCGGTAGAGCTCCTGTACATGCGCCATTTTCTCGTGCATTCCATTGCTCTCCCAGTAAGTGTTGAAGTCCTTATGTAGATGCAGCAGCCATAGCTTCTTCAAGGAGCGAAGAAACTCGATGCCTTCAGGTACCTTTTTCACATTGTACAAAGACACAATGTGCAAACCTTCAATCCGTGGAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAAACACCCTGCAGAAAGAACTAATGTCTTTGTAGTATACACCCTGTTTAGTCTTAGAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGGGGATCTTCCCCAAGATGACACCAGCTTAGAGCTAAGTACTTGAGATTTCTCCCACAGTCCTGAAATATTGGGCATTGCAGTGTCCCATTGGCCCAGTGCCCTCTGACA]

[+] EMBL CB682522             [ATATATCTTCCAATATACCCTCAAGAGGGACTTTCTCAGAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAAAAAAATAGCATAGCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAGCTAAGGATTAATTGGGCAGGACAAGATGCGTTATTTAGTACTGTGCAGAGGCATCTTGGCACGAGTACGTGTTATGCAGAAGGAAGAGTAAAATATGTCACTCCTAGATGCGGTAGAGCTCCTGTACATGCGCCATTTTCTCGTGCATTCCATTGCTCTCCCAGTAAGTGTTGAAGTCCTTATGTAGATGCAGCAGCCATAGCTTCTTCAAGGAGCGAAGAAACTCGATGCCTTCAGGTACCTTTTTCACATTGTACAAAGACACAATGTGCAAACCTTCAATCCGTGGAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAAACACCCTGCAGAAAGAACTAATGTCTTTGTAGTATACACCCTGTTTAGTCTTAGAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGG                                                                                                            ]
[+] EMBL CB682520             [                                     tGAGGAGAAAGCCAATGGTTCAGGATTATTTAAAAAATAAAAAAATAGCATACCCCATTACCAAATACTCCACAAATCTATTGATAGCACATTAGCTAAGGATTAATTGGGCAGGACAAGATGCGTTATTTAGTACTGTGCAGAGGCATCTTGGCACGAGTACGTGTTATGCAGAAGGAAGAGTAAAATATGTCACTCCTAGATGCGGTAGAGCTCCTGTACATGCGCCATTTTCTCGTGCATTCCATTGCTCTCCCAGTAAGTGTTGAAGTCCTTATGTAGATGCAGCAGCCATAGCTTCTTCAAGGAGCGAAGAAACTCGATGCCTTCAGGTACCTTTTTCACATTGTACAAAGACACAATGTGCAAACCTTCAATCCGTGGAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAAACACCCTGCAGAAAGAACTAATGTCTTTGTAGTATACACCCTGTTTAGTCTTAGAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGGGGATCTTCCCCAAGATGACACCAGCTTAGAGCTAAGTACTTGAGATTTCTCCCACAGTCCTGAAATATTGGGCATTGCAGTGTCCCATTGGCCCAGTGCCCTCTGACA]




>consensus_5703#0
ATATATCTTCCAATATACCCTCAAGAGGGACTTTCTCAGAGGAGAAAGCCAATGTTTCAG
GATTATTTAAAAAATAAAAAAATAGCATAGCACATTACCAAATACTCCACAAATCTATTG
ATAGCACATTAGCTAAGGATTAATTGGGCAGGACAAGATGCGTTATTTAGTACTGTGCAG
AGGCATCTTGGCACGAGTACGTGTTATGCAGAAGGAAGAGTAAAATATGTCACTCCTAGA
TGCGGTAGAGCTCCTGTACATGCGCCATTTTCTCGTGCATTCCATTGCTCTCCCAGTAAG
TGTTGAAGTCCTTATGTAGATGCAGCAGCCATAGCTTCTTCAAGGAGCGAAGAAACTCGA
TGCCTTCAGGTACCTTTTTCACATTGTACAAAGACACAATGTGCAAACCTTCAATCCGTG
GAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTG
TCTTTAGCTCTGGAAAACACCCTGCAGAAAGAACTAATGTCTTTGTAGTATACACCCTGT
TTAGTCTTAGAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGGGGATCTTCCC
CAAGATGACACCAGCTTAGAGCTAAGTACTTGAGATTTCTCCCACAGTCCTGAAATATTG
GGCATTGCAGTGTCCCATTGGCCCAGTGCCCTCTGACA

consensusID : consensus_5703#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [ATACAATTCAATTGGGAAATCCCTCATATTACATGAAAATATTATATATCTTCCAATATACTTCCAAAAGGGACTTTCTCAAAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAAAAAAATACCATATCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAACTAAGGATTAATTGGGCAGGACAAGATGCGTTATTTAATACTGCGCAAAGGCATCTTGGCACTAGTACGTGTTACTGCAAAAGGAAAAGTAAAATATGTCACTCCTATATGCGGTACAGCTCCTGTACATGCCCCATTTTCTCGGGCATTCCATTGCTCTCCCACCAAGTGTTGAACTCCTTATGGAGATGCCTTCCCGTACCTTTTTCACATTGGACAAAGACACAATGTGCAAACCTTCAATCAGAGGAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAAACACCCTGCACAAAGAACTAATGTCTTTGCAGTATACACCCTGTTTAGTCTTACAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGG]

[+] EMBL CB628039             [ATACAATTCAATTGGGAAATCCCTCATATTACATGAAAATATTATATATCTTCCAATATACTTCCAAAAGGGACTTTCTCAAAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAAAAAAATACCATATCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAACTAAGGATTAATTGGGCAGGACAAGATGCGTTATTTAATACTGCGCAAAGGCATCTTGGCACTAGTACGTGTTACTGCAAAAGGAAAAGTAAAATATGTCACTCCTATATGCGGTACAGCTCCTGTACATGCCCCATTTTCTCGGGCATTCCATTGCTCTCCCACCAAGTGTTGAACTCCTTATGGAGATGCCTTCCCGTACCTTTTTCACATTGGACAAAGACACAATGTGCAAACCTTCAATCAGAGGAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAAACACCCTGCACAAAGAACTAATGTCTTTGCAGTATACACCCTGTTTAGTCTTACAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGG]




>consensus_5703#1
ATACAATTCAATTGGGAAATCCCTCATATTACATGAAAATATTATATATCTTCCAATATA
CTTCCAAAAGGGACTTTCTCAAAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAA
AAAAATACCATATCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAACTAAG
GATTAATTGGGCAGGACAAGATGCGTTATTTAATACTGCGCAAAGGCATCTTGGCACTAG
TACGTGTTACTGCAAAAGGAAAAGTAAAATATGTCACTCCTATATGCGGTACAGCTCCTG
TACATGCCCCATTTTCTCGGGCATTCCATTGCTCTCCCACCAAGTGTTGAACTCCTTATG
GAGATGCCTTCCCGTACCTTTTTCACATTGGACAAAGACACAATGTGCAAACCTTCAATC
AGAGGAAGGGCACGGTCTTCGATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACG
AGTGTCTTTAGCTCTGGAAAACACCCTGCACAAAGAACTAATGTCTTTGCAGTATACACC
CTGTTTAGTCTTACAAAGGTGAGGTATGGCACATGTGATGCTAACAGTGACAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5703#0      -------------------------------------------ATATATCTTCCAATATA 17
consensus_5703#1      ATACAATTCAATTGGGAAATCCCTCATATTACATGAAAATATTATATATCTTCCAATATA 60
                                                                 *****************

consensus_5703#0      CCCTCAAGAGGGACTTTCTCAGAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAA 77
consensus_5703#1      CTTCCAAAAGGGACTTTCTCAAAGGAGAAAGCCAATGTTTCAGGATTATTTAAAAAATAA 120
                      *   *** ************* **************************************

consensus_5703#0      AAAAATAGCATAGCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAGCTAAG 137
consensus_5703#1      AAAAATACCATATCACATTACCAAATACTCCACAAATCTATTGATAGCACATTAACTAAG 180
                      ******* **** ***************************************** *****

consensus_5703#0      GATTAATTGGGCAGGACAAGATGCGTTATTTAGTACTGTGCAGAGGCATCTTGGCACGAG 197
consensus_5703#1      GATTAATTGGGCAGGACAAGATGCGTTATTTAATACTGCGCAAAGGCATCTTGGCACTAG 240
                      ******************************** ***** *** ************** **

consensus_5703#0      TACGTGTTA-TGCAGAAGGAAGAGTAAAATATGTCACTCCTAGATGCGGTAGAGCTCCTG 256
consensus_5703#1      TACGTGTTACTGCAAAAGGAAAAGTAAAATATGTCACTCCTATATGCGGTACAGCTCCTG 300
                      ********* **** ****** ******************** ******** ********

consensus_5703#0      TACATGCGCCATTTTCTCGTGCATTCCATTGCTCTCCCAGTAAGTGTTGAAGTCCTTATG 316
consensus_5703#1      TACATGCCCCATTTTCTCGGGCATTCCATTGCTCTCCCACCAAGTGTTGAACTCCTTATG 360
                      ******* *********** *******************  ********** ********

consensus_5703#0      TAGATGCAGCAGCCATAGCTTCTTCAAGGAGCGAAGAAACTCGATGCCTTCAGGTACCTT 376
consensus_5703#1      GAGATGC----------------------------------------CTTCCCGTACCTT 380
                       ******                                        ****  *******

consensus_5703#0      TTTCACATTGTACAAAGACACAATGTGCAAACCTTCAATCCGTGGAAGGGCACGGTCTTC 436
consensus_5703#1      TTTCACATTGGACAAAGACACAATGTGCAAACCTTCAATCAGAGGAAGGGCACGGTCTTC 440
                      ********** ***************************** * *****************

consensus_5703#0      GATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAA 496
consensus_5703#1      GATCTCCACCTTGTTGACATCCGGCATGTGTTTCAAAACGAGTGTCTTTAGCTCTGGAAA 500
                      ************************************************************

consensus_5703#0      ACACCCTGCAGAAAGAACTAATGTCTTTGTAGTATACACCCTGTTTAGTCTTAGAAAGGT 556
consensus_5703#1      ACACCCTGCACAAAGAACTAATGTCTTTGCAGTATACACCCTGTTTAGTCTTACAAAGGT 560
                      ********** ****************** *********************** ******

consensus_5703#0      GAGGTATGGCACATGTGATGCTAACAGTGACAGGGGATCTTCCCCAAGATGACACCAGCT 616
consensus_5703#1      GAGGTATGGCACATGTGATGCTAACAGTGACAGG-------------------------- 594
                      **********************************                          

consensus_5703#0      TAGAGCTAAGTACTTGAGATTTCTCCCACAGTCCTGAAATATTGGGCATTGCAGTGTCCC 676
consensus_5703#1      ------------------------------------------------------------
                                                                                  

consensus_5703#0      ATTGGCCCAGTGCCCTCTGACA 698
consensus_5703#1      ----------------------