cluster # 5710

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Oryza sativa
cluster # 5710 cluster # 5710 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5710#0 length = 281 sequences # 1

consensus_5710#1 length = 281 sequences # 1
consensus_5710#2 length = 281 sequences # 1

consensusID : consensus_5710#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [ATCNTTGNNTCAACGGGGCCGNCTTCCTTTTTGGGAACCAGAAGNATTNNCCGTTGGGTTGGAAATTGGNCGNAGAATTNTGNATGGATTCCCAGAAGTGGAAATTTCGTCAGTGGCCGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTTGGTANAAAAGCCCGGTGAATCCATCCGGNCCCGGCGCCTTCTCGTTGGGCATCTNTTTTATCACCTTCCAAACTTCCTCTTCAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGG]

[+] EMBL AU176512             [ATCNTTGNNTCAACGGGGCCGNCTTCCTTTTTGGGAACCAGAAGNATTNNCCGTTGGGTTGGAAATTGGNCGNAGAATTNTGNATGGATTCCCAGAAGTGGAAATTTCGTCAGTGGCCGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTTGGTANAAAAGCCCGGTGAATCCATCCGGNCCCGGCGCCTTCTCGTTGGGCATCTNTTTTATCACCTTCCAAACTTCCTCTTCAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGG]




>consensus_5710#0
ATCNTTGNNTCAACGGGGCCGNCTTCCTTTTTGGGAACCAGAAGNATTNNCCGTTGGGTT
GGAAATTGGNCGNAGAATTNTGNATGGATTCCCAGAAGTGGAAATTTCGTCAGTGGCCGC
CAGCACTTCCCCTTTGATGACTTGGCCAACACCGTTGGTANAAAAGCCCGGTGAATCCAT
CCGGNCCCGGCGCCTTCTCGTTGGGCATCTNTTTTATCACCTTCCAAACTTCCTCTTCAG
AGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGG

consensusID : consensus_5710#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [CTTGGATCAACGGGGGNCGNCATCCTTNTTGGGNAGCAGNAGTATTNACCGGTTGGGTTGGAGAATTGGCCGAGNATTCTGATGATTCCCAGAAGTGGAAATTTCGGTCAGTGGCCGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTNGGTAGAAAAGCCCGGGGAATCCATCCGGNCCCGGCGCCTTCTCGTTNGGCATCTNTTTTATCACCTTCCAAACTTCCTCTTCANAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAA]

[+] EMBL AU176509             [CTTGGATCAACGGGGGNCGNCATCCTTNTTGGGNAGCAGNAGTATTNACCGGTTGGGTTGGAGAATTGGCCGAGNATTCTGATGATTCCCAGAAGTGGAAATTTCGGTCAGTGGCCGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTNGGTAGAAAAGCCCGGGGAATCCATCCGGNCCCGGCGCCTTCTCGTTNGGCATCTNTTTTATCACCTTCCAAACTTCCTCTTCANAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAA]




>consensus_5710#1
CTTGGATCAACGGGGGNCGNCATCCTTNTTGGGNAGCAGNAGTATTNACCGGTTGGGTTG
GAGAATTGGCCGAGNATTCTGATGATTCCCAGAAGTGGAAATTTCGGTCAGTGGCCGCCA
GCACTTCCCCTTTGATGACTTGGCCAACACCGTNGGTAGAAAAGCCCGGGGAATCCATCC
GGNCCCGGCGCCTTCTCGTTNGGCATCTNTTTTATCACCTTCCAAACTTCCTCTTCANAG
AAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAA

consensusID : consensus_5710#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [TTTGATCAACGNGGGCGCATCCTTCTTTGGGAGCANAGTAATCACCGCTGTGTTGAGATTGTCGAGATTCTGATGATTCCCAGAGTGAAATTTCGTCAGTGCCGCCAGCACTTCCCCTTTGATGACTTGCCAACACCGTTGGTAGAAAAGCCCGGTGAATCCATCCGGTCCCGGCGCCTTCTCGTTTGGCATCTCTTTTATCACCTTCCAAACTTCCTCTTCAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAAGATTTGATTGAATT]

[+] EMBL AU176513             [TTTGATCAACGNGGGCGCATCCTTCTTTGGGAGCANAGTAATCACCGCTGTGTTGAGATTGTCGAGATTCTGATGATTCCCAGAGTGAAATTTCGTCAGTGCCGCCAGCACTTCCCCTTTGATGACTTGCCAACACCGTTGGTAGAAAAGCCCGGTGAATCCATCCGGTCCCGGCGCCTTCTCGTTTGGCATCTCTTTTATCACCTTCCAAACTTCCTCTTCAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAAGATTTGATTGAATT]




>consensus_5710#2
TTTGATCAACGNGGGCGCATCCTTCTTTGGGAGCANAGTAATCACCGCTGTGTTGAGATT
GTCGAGATTCTGATGATTCCCAGAGTGAAATTTCGTCAGTGCCGCCAGCACTTCCCCTTT
GATGACTTGCCAACACCGTTGGTAGAAAAGCCCGGTGAATCCATCCGGTCCCGGCGCCTT
CTCGTTTGGCATCTCTTTTATCACCTTCCAAACTTCCTCTTCAGAGAAAGGCACTTCCAG
CTCTTGCAGGTTCGGCGCCGGAGGGAAGATTTGATTGAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5710#0      ATCNTTGNNTCAACGGGG-CCGNCTTCCTTTTTGGGAACCAGAAGNATTNNCCG-TTGGG 58
consensus_5710#1      ---CTTGGATCAACGGGGGNCGNCATCCTTNTTGGGNAGCAGNAGTATTNACCGGTTGGG 57
consensus_5710#2      ----TTTGATCAACGNGGGC--GCATCCTTCTTTGGGAGCANA-GTAATCACCG-CTGTG 52
                          **   ****** **     * ***** ** ** * **   * * *  ***  ** *

consensus_5710#0      TTGGAAATTGGNCGNAGAATTNTGNATGGATTCCCAGAAGTGGAAATTTCG-TCAGTGGC 117
consensus_5710#1      TTGGAGAATTGGCCGAGNATTCTGAT--GATTCCCAGAAGTGGAAATTTCGGTCAGTGGC 115
consensus_5710#2      TTGAGA--TTGTCGA--GATTCTGAT--GATTCCCAGAGT--GAAATTTCG-TCAGTG-C 102
                      ***     * * *     *** **    **********    ********* ****** *

consensus_5710#0      CGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTTGGTANAAAAGCCCGGTGAATC 177
consensus_5710#1      CGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTNGGTAGAAAAGCCCGGGGAATC 175
consensus_5710#2      CGCCAGCACTTCCCCTTTGATGACTTG-CCAACACCGTTGGTAGAAAAGCCCGGTGAATC 161
                      *************************** ********** **** ********** *****

consensus_5710#0      CATCCGGNCCCGGCGCCTTCTCGTTGGGCATCTNTTTTATCACCTTCCAAACTTCCTCTT 237
consensus_5710#1      CATCCGGNCCCGGCGCCTTCTCGTTNGGCATCTNTTTTATCACCTTCCAAACTTCCTCTT 235
consensus_5710#2      CATCCGGTCCCGGCGCCTTCTCGTTTGGCATCTCTTTTATCACCTTCCAAACTTCCTCTT 221
                      ******* ***************** ******* **************************

consensus_5710#0      CAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGG---------------- 281
consensus_5710#1      CANAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAA-------------- 281
consensus_5710#2      CAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAAGATTTGATTGAATT 281
                      ** *****************************************