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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1554 fasta sequence
[TTGGTTTGGTTTGGCTTTGCTTCTTCCTCGCGCGGCGCCTCCCATCCGCATGGATGATGCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTGATATTTCCATTTCCTCCCCATTGTTCCCTCCTTCTGCCTCCTCCCTCCTCAAATCTACACCTATCCCCACCACCGCCCTAGCTTCTTCTCCTCTCCCGCAGCCGCCCGCAAGATCGATCTGTCACTCATGCCCGTGCAGCTGGGAGGAGGGGGCAAGGTGGCGGAACCCAAGGACCTCGCCGCCACCGACAAGGACCGCCCCTCCTCCAAGAAGAACCGCCGCCGCCAAAAGAAGCCCGCAACTTCCGCCGCCATCTCCCCGCCGGTCGCCGCCATGCAGACCCTCTTCGACACCAGCAGGGAGGTCTTCCAGGATTCTTTGCCGGGATTCGTGCCGCCGCCCCAAGCCGTCGCCCGACTCGCCGCCCTACTCAATGATTTGAAACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAGGGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCTTCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCTGCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAGATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAGATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATTTGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACAACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTGGTGGAGATGCGCGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTGTACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACACCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACTGCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTCTTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATCTCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAATTGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTGTTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGTGTGGTTTGCTTGGTTTGTTGAACAGGGAGGCTATTCCTTTTTGCCTCTTACTGTAGTAGACAAGAGGCATATACATACATAACATAGCCTTTGTTTCTTGAGCAAAGAAATAAA]
[+] EMBL AK068520 [TTGGTTTGGTTTGGCTTTGCTTCTTCCTCGCGCGGCGCCTCCCATCCGCATGGATGATGCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTGATATTTCCATTTCCTCCCCATTGTTCCCTCCTTCTGCCTCCTCCCTCCTCAAATCTACACCTATCCCCACCACCGCCCTAGCTTCTTCTCCTCTCCCGCAGCCGCCCGCAAGATCGATCTGTCACTCATGCCCGTGCAGCTGGGAGGAGGGGGCAAGGTGGCGGAACCCAAGGACCTCGCCGCCACCGACAAGGACCGCCCCTCCTCCAAGAAGAACCGCCGCCGCCAAAAGAAGCCCGCAACTTCCGCCGCCATCTCCCCGCCGGTCGCCGCCATGCAGACCCTCTTCGACACCAGCAGGGAGGTCTTCCAGGATTCTTTGCCGGGATTCGTGCCGCCGCCCCAAGCCGTCGCCCGACTCGCCGCCCTACTCAATGATTTGAAACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAGGGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCTTCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCTGCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAGATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAGATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATTTGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACAACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTGGTGGAGATGCGCGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTGTACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACACCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACTGCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTCTTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATCTCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAATTGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTGTTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGTGTGGTTTGCTTGGTTTGTTGAACAGGGAGGCTATTCCTTTTTGCCTCTTACTGTAGTAGACAAGAGGCATATACATACATAACATAGCCTTTGTTTCTTGAGCAAAGAAAT ]
[-] EMBL CB645901 [ ACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACAACCGCGGGGATGGAAGGGATTGCTCATATTAGGACGAATCCCCATACTTGAGTTCATCTGGTGGAGATGCACGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTGTACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACACCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACTGCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTCTTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATCTCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAATTGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTGTTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGTGTGGTTTGCTTGGTTTGTTGAACAGGGAAGCTATTCCTTTTTGCCTCTTACTGTAGTAGACAAGAGGCATAAAGGTACATAACATAGCCTTTGTTTCTTGAGCAAAccttaaaa]
consensusID : consensus_5714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1394 fasta sequence
[TTTCTTCTTCTTCTTCTTCTTTTTTCCATCATGTGATAGTAGTGATACTATGCAAAGACATGATGAAGAAATTGCTACAAGCTGGTTCTTAACATTGTGTTTCTTCTAAATCTTCCAAGTATTTGATATTTCTGCAATTGACTCCTTAATGTTCAAACTAAACTAGTAGGTCGTTCTTTTTTGTTTGTTAGACTACTTCAGTAATTATTATTTTTGACTCAGCCTTGCACTTTTGAACATTTCTTGCATGTGCACTTGTCTATATGCAAATACCTGTGATTCTTAACCCAGATCCTGACATCCATTTTGTCCCATCTCCTTCCTTTTGGATGCAGATGATTTGAAACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAGGGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCTTCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCTGCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAGATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAGATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATTTGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACAACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTGGTGGAGATGCACGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTGTACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACACCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACTGCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTCTTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATCTCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAATTGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTGTTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGTGTGGTTTGCTTGGTTTGTTGAACAGGGAAGCTATTCCTTTTTGCCTCTTACTGTAGTAGACAAGAGGCATATACATACATAACATAGCCT]
[+] EMBL AK065070 [TTTCTTCTTCTTCTTCTTCTTTTTTCCATCATGTGATAGTAGTGATACTATGCAAAGACATGATGAAGAAATTGCTACAAGCTGGTTCTTAACATTGTGTTTCTTCTAAATCTTCCAAGTATTTGATATTTCTGCAATTGACTCCTTAATGTTCAAACTAAACTAGTAGGTCGTTCTTTTTTGTTTGTTAGACTACTTCAGTAATTATTATTTTTGACTCAGCCTTGCACTTTTGAACATTTCTTGCATGTGCACTTGTCTATATGCAAATACCTGTGATTCTTAACCCAGATCCTGACATCCATTTTGTCCCATCTCCTTCCTTTTGGATGCAGATGATTTGAAACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAGGGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCTTCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCTGCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAGATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAGATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATTTGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACAACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTGGTGGAGATGCACGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTGTACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACACCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACTGCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTCTTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATCTCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAATTGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTGTTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGTGTGGTTTGCTTGGTTTGTTGAACAGGGAAGCTATTCCTTTTTGCCTCTTACTGTAGTAGACAAGAGGCATATACATACATAACATAGCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5714#0 TTGGTTTGGTTTGGCTTTGCTTCTTCCTCGCGCGGCGCCTCCCATCCGCATGGATGATGC 60
consensus_5714#1 ------------------------------------------------------------
consensus_5714#0 CTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTGATATTTCCATTTCCTCCCCATTG 120
consensus_5714#1 -------------------------------------------------------TTTCT 5
*
consensus_5714#0 TTCCCTCCTTCTGCCTCCTCCCTCCTCAAATCTACACCTATCCCCACCACCGCCCTAGCT 180
consensus_5714#1 TCTTCTTCTTCTTCTTTTTTCCATCATGTGATAGTAGTGATACTATGCAAAGACATGA-T 64
* ** ***** * * * ** * * ** * ** * * * *
consensus_5714#0 TCTTCTCCTCTCCCGCAGCCGCCCGCAAGATCGATCTGTCACTCATGCCCGTGCAGCTGG 240
consensus_5714#1 GAAGAAATTGCTACAAGCTGGTTCTTAACATTG---TGTTTCTTCTAAATCTTC--CAAG 119
* * * * ** ** * *** ** * * * * *
consensus_5714#0 GAGGAGGGGGCAAGGTGGCGGAACCCAAGGACCTCGCCGCCACCGACAAGGACCGCCCCT 300
consensus_5714#1 TATTTGATATTTCTGCAATTGACTCCTTAATGTTCAAACTAAACTAGTAGGTCGTTCTTT 179
* * * ** ** ** * * * *** * * *
consensus_5714#0 CCTCCAAGAAGAACCGCCGCCGCCAAAAGAAGCCCGCAACTTCCGCCGCCATCTCCCCGC 360
consensus_5714#1 TTTGTTTGTTAGACTACT-TCAGTAATTATTATTTTTGACTCAGCCTTGCACTTTTGAAC 238
* * ** * * ** *** * ** * *
consensus_5714#0 CGGTCGCCGCCATGCAGACCCTCTTCGACACCAGCAGGGAGGTCTTCCAGGATTCTTTGC 420
consensus_5714#1 --ATTTCTTGCATGTGCACTTGTCTATATGCAAATA---------CCTGTGATTCTTAAC 287
* * **** ** * * * * * * ******* *
consensus_5714#0 CGGGATTCGTGCCGCCGCCCCAAGCCGTCGCCCGACTCGCCGCCCTACTCAATGATTTGA 480
consensus_5714#1 CCAGATCCTGACATCCATTTTGTCCCATCTCCTTCCTTTTGGATGCA---GATGATTTGA 344
* *** * * ** ** ** ** ** * * *********
consensus_5714#0 AACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAG 540
consensus_5714#1 AACCACATGATGTTGGAATTGAGCCGAGTATGTCGTGTTTCAAGAATGCCGATTCTAAAG 404
************************************************************
consensus_5714#0 GGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCT 600
consensus_5714#1 GGCCTCCTCGGGTGACTTATCTACATTTTTACGATTGCCCCAAGTTTTCGTTTGGTATCT 464
************************************************************
consensus_5714#0 TCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCT 660
consensus_5714#1 TCTGTTTACCGAAGTCAGCTGTCATTCCCCTCCACAATCATCCTGGGATGACAGTATTCT 524
************************************************************
consensus_5714#0 GCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAG 720
consensus_5714#1 GCAAGATACTGTTTGGCTCCATGCACCTCAAGTCCTATGACTGGGCTAAAAGTGCCCCAG 584
************************************************************
consensus_5714#0 ATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAG 780
consensus_5714#1 ATAATGATAATAATGCACTTGAGACCTCAGATGGAGCTCGTTTAGCAAAGGTAAATACAG 644
************************************************************
consensus_5714#0 ATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATT 840
consensus_5714#1 ATGCGGTTTTTGATGCTTCATCGGAGACCACAGTTCTATACCCTGAAAATGGAGGGAATT 704
************************************************************
consensus_5714#0 TGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACA 900
consensus_5714#1 TGCACTGTTTTACTGCAAGGACAGCTTGTGCTGTGCTTGACGTGATGGGACCCCCGTACA 764
************************************************************
consensus_5714#0 ACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTG 960
consensus_5714#1 ACCGCGCGGATGGAAGGGATTGCTCATATTACGACGAATCCCCATACTTGAGTTCATCTG 824
************************************************************
consensus_5714#0 GTGGAGATGCGCGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTG 1020
consensus_5714#1 GTGGAGATGCACGGTACTCGTGGCTCAAAGAAAATCATAGTACGTTCGAGATGAAAGGTG 884
********** *************************************************
consensus_5714#0 TACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACA 1080
consensus_5714#1 TACAGATGCCACAAAGGTTTATCGTTTAGAAATGACATACAGCATCATTTTGTGGCAACA 944
************************************************************
consensus_5714#0 CCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACT 1140
consensus_5714#1 CCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACT 1004
************************************************************
consensus_5714#0 GCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTC 1200
consensus_5714#1 GCAAAGACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTC 1064
************************************************************
consensus_5714#0 TTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATC 1260
consensus_5714#1 TTGAGTGACACAGACGTTACATTTGTTTGGCTTCTTATTTTGGTCAGGGTTGAAACAATC 1124
************************************************************
consensus_5714#0 TCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAAT 1320
consensus_5714#1 TCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGTCTGGCAGTGCAAAAT 1184
************************************************************
consensus_5714#0 TGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTG 1380
consensus_5714#1 TGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTG 1244
************************************************************
consensus_5714#0 TTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGT 1440
consensus_5714#1 TTTCCCTGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGATCATGTACCGAATTCAGAGT 1304
************************************************************
consensus_5714#0 GTGGTTTGCTTGGTTTGTTGAACAGGGAGGCTATTCCTTTTTGCCTCTTACTGTAGTAGA 1500
consensus_5714#1 GTGGTTTGCTTGGTTTGTTGAACAGGGAAGCTATTCCTTTTTGCCTCTTACTGTAGTAGA 1364
**************************** *******************************
consensus_5714#0 CAAGAGGCATATACATACATAACATAGCCTTTGTTTCTTGAGCAAAGAAATAAA 1554
consensus_5714#1 CAAGAGGCATATACATACATAACATAGCCT------------------------ 1394
******************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||