cluster # 5717

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Oryza sativa
cluster # 5717 cluster # 5717 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5717#0 length = 553 sequences # 2

consensus_5717#1 length = 339 sequences # 1

consensusID : consensus_5717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 553
fasta sequence

                              [TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGCGAGACTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCCCTCGTCGTCGTCGTCGGTCGCCCCGTCCTCCGGCGAGGCGACGCCGTACATGCGCCGCAGCCTCGACGCGGCTTGCGGCGGGAAAGCCCCACGCTGGATCGAGTTCTGGAGCGACGCCGCGTCCGACCGGCGCCGCCGTGACTCGTCCTCCTCGGAGGCCTCGACCGCGTCGTCGTCATCCGGGTGCGCGTCGCCGCCGGCGAGGAGATCGAGGACCCCGCACTGGGTCGACACCTACCTGGACAGGCTCGGGTCAGTCCTCAAGAGCGGCGGGTGGAGGGACACGGAGGTGAATGAGATGGTCGAGGTGACGGCCTCCGGTCTGTTCGACGGCGAGGAGGCGCCGGCGGTGGACGCCGACGCGGTGCTCGACGCGCTCCTCCTGAAGGCCGACAGGTGCTCGGACTCGCTCCGCCGTGCCGGGTGGAGCTCCGAGGACGTGTCCGACGCGCTGGG]

[+] EMBL AU184546             [TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGCGAGACTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCCCTCGTCGTCGTCGTCGGTCGCCCCGTCCTCCGGCGAGGCGACGCCGTACATGCGCCGCAGCCTCGACGCGGCTTGCGGCGGGAAAGCCCCACGCTGGATCGAGTTCTGGAGCGACGCCGCGTCCGACCGGCGCCGCCGTGACTCGTCCTCCTCGGAGGCCTCGACCGCGTCGTCGTCATCCGGGTGCGCGTCGCCGCCGGCGAGGAGATCGAGGACCCCGCACTGGGTCGACACCTACCTGGACAGGCTCGGGTCAGTCCTCAAGAGCGGCGGGTGGAGGGACACGGAGGTGAATGAGATGGTCGAGGTGACGGCCTCCGGTCTGTTCGACGGCGA                                                                                                                        ]
[-] EMBL AU176522             [                                                                                                                                                                                                                                                                                TCATCCGGGTGCGCGTCGCCGCCGGCGAGGAGATCGAGGACCCCGCACTGGGTCGACACCTACCTGGACAGGCTCGGGTCAGTCATCAAGAGCGGCGGGTGGAGGGACACGGAGGTGAATGAGATGGTCGAGGTGACGGCCTCCGGTCTGTTCGACGGCGAGGAGGCGCCGGCGGTGGACGCCGACGCGGTGCTCGACGCGCTCCTCCTGAAGGCCGACAGGTGCTCGGACTCGCTCCGCCGTGCCGGGTGGAGCTCCGAGGACGTGTCCGACGCGCTGGG]




>consensus_5717#0
TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGC
GAGACTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCCCTCGTCGTCGTCGTCGGTCGCCC
CGTCCTCCGGCGAGGCGACGCCGTACATGCGCCGCAGCCTCGACGCGGCTTGCGGCGGGA
AAGCCCCACGCTGGATCGAGTTCTGGAGCGACGCCGCGTCCGACCGGCGCCGCCGTGACT
CGTCCTCCTCGGAGGCCTCGACCGCGTCGTCGTCATCCGGGTGCGCGTCGCCGCCGGCGA
GGAGATCGAGGACCCCGCACTGGGTCGACACCTACCTGGACAGGCTCGGGTCAGTCCTCA
AGAGCGGCGGGTGGAGGGACACGGAGGTGAATGAGATGGTCGAGGTGACGGCCTCCGGTC
TGTTCGACGGCGAGGAGGCGCCGGCGGTGGACGCCGACGCGGTGCTCGACGCGCTCCTCC
TGAAGGCCGACAGGTGCTCGGACTCGCTCCGCCGTGCCGGGTGGAGCTCCGAGGACGTGT
CCGACGCGCTGGG

consensusID : consensus_5717#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGCGAGANTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCANTCGTNGTCGTCGTCGGTNGACCCGTNCTCCGGNGAGGCGACGNCGTACATGNGCCGCAGCCTCGACGNGGNTTGNGGNGGGAAAGCCCNANGCTGGATCNANTTCTGGAGCAANGNCGTTNCGACCGGCGNCGAGTTNACTAGNTNCTNCTTGGAGGNCTCGACCGTNTNGTAGTNAATNCGTGTNTTNNTTTGAGTTTGAATTGAGATCTANGGAACNNNGACTNGGTTGANAGCTANNT]

[+] EMBL OSR28101A            [TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGCGAGANTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCANTCGTNGTCGTCGTCGGTNGACCCGTNCTCCGGNGAGGCGACGNCGTACATGNGCCGCAGCCTCGACGNGGNTTGNGGNGGGAAAGCCCNANGCTGGATCNANTTCTGGAGCAANGNCGTTNCGACCGGCGNCGAGTTNACTAGNTNCTNCTTGGAGGNCTCGACCGTNTNGTAGTNAATNCGTGTNTTNNTTTGAGTTTGAATTGAGATCTANGGAACNNNGACTNGGTTGANAGCTANNT]




>consensus_5717#1
TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGC
GAGANTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCANTCGTNGTCGTCGTCGGTNGACC
CGTNCTCCGGNGAGGCGACGNCGTACATGNGCCGCAGCCTCGACGNGGNTTGNGGNGGGA
AAGCCCNANGCTGGATCNANTTCTGGAGCAANGNCGTTNCGACCGGCGNCGAGTTNACTA
GNTNCTNCTTGGAGGNCTCGACCGTNTNGTAGTNAATNCGTGTNTTNNTTTGAGTTTGAA
TTGAGATCTANGGAACNNNGACTNGGTTGANAGCTANNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5717#0      TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGC 60
consensus_5717#1      TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGC 60
                      ************************************************************

consensus_5717#0      GAGACTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCCCTCGTCGTCGTCGTCGGTCGCCC 120
consensus_5717#1      GAGANTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCANTCGTNGTCGTCGTCGGTNGACC 120
                      **** *******************************  **** ************ * **

consensus_5717#0      CGTCCTCCGGCGAGGCGACGCCGTACATGCGCCGCAGCCTCGACGCGGCTTGCGGCGGGA 180
consensus_5717#1      CGTNCTCCGGNGAGGCGACGNCGTACATGNGCCGCAGCCTCGACGNGGNTTGNGGNGGGA 180
                      *** ****** ********* ******** *************** ** *** ** ****

consensus_5717#0      AAGCCCCACGCTGGATCGAGTTCTGGAGCGACGCCGCGTCCGACCGGCGCCGCCGTGACT 240
consensus_5717#1      AAGCCCNANGCTGGATCNANTTCTGGAGCAANGNCGT-TNCGACCGGCGNCGAGTTNACT 239
                      ****** * ******** * ********* * * **  * ********* **   * ***

consensus_5717#0      CGT-CCTCCTCGGAGGCCTCGACCGCGTCGTCGTCA-TCCGGGTGCGCGTCGCCGCCGGC 298
consensus_5717#1      AGNTNCTNCTTGGAGGNCTCGACCGTNTNGTAGTNAATNCGTGTNTTNNTTTGAGTTTGA 299
                       *   ** ** ***** ********  * ** ** * * ** **     *    *   * 

consensus_5717#0      GAGGAGATC-GAGGACCCCGCACTGGGTCGACACCTACCTGGACAGGCTCGGGTCAGTCC 357
consensus_5717#1      ATTGAGATCTANGGAACNNNGACTNGGTTGANAGCTANNT-------------------- 339
                         ******   *** *    *** *** ** * ***  *                    

consensus_5717#0      TCAAGAGCGGCGGGTGGAGGGACACGGAGGTGAATGAGATGGTCGAGGTGACGGCCTCCG 417
consensus_5717#1      ------------------------------------------------------------
                                                                                  

consensus_5717#0      GTCTGTTCGACGGCGAGGAGGCGCCGGCGGTGGACGCCGACGCGGTGCTCGACGCGCTCC 477
consensus_5717#1      ------------------------------------------------------------
                                                                                  

consensus_5717#0      TCCTGAAGGCCGACAGGTGCTCGGACTCGCTCCGCCGTGCCGGGTGGAGCTCCGAGGACG 537
consensus_5717#1      ------------------------------------------------------------
                                                                                  

consensus_5717#0      TGTCCGACGCGCTGGG 553
consensus_5717#1      ----------------