cluster # 5734

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Oryza sativa
cluster # 5734 cluster # 5734 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5734#0 length = 871 sequences # 1

consensus_5734#1 length = 384 sequences # 2

consensusID : consensus_5734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 871
fasta sequence

                              [ATTTGATGAAAAGTTTGTCAGAATAGATACAGAAAGACTATGTGAGCTGACATCGGCGGCTGATAGTCTCCAATTAAAGCCATTGGTTGATCTTACCAGTCGAGCACTTGCTCGAATAATTGAAGGAAAGACACCTGAGGAAATTCGTGATATTTTCCATTTGCCAGATGACTTAACAGAGGAAGAGAAATTGGAACCCCTGAAAAATATAAATGATGATCCCAGGATCCGTTTGTTGAATCGATTATATGCACAGAAGCGGAAAGAACTACAGGAGCGCCAGAAACTGAAGGATGTTCAAGTACAAGAAGAGCAAAAAGATGAGCGGTCACTGGATGAGATACTATGTTTTATAAATGGGGATGGAGGTTCTGGAGGTGGGAAAGCTTCTAAGAATAAGAAAAAGAACAAGAGAAGAAAGGACCATTCTAAGAACCCCCCAAAAGCTAATCCTGAACCTGTAAACAAGGAGGAAGCTACTCGTGGAGTTCCATTCAATGCGGGTACTGGTAATATTTCTAGAACACCTTGCCAAAGCTCAGATGTGCAAGATGATGTTGAGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGATCCTGCAATGCAGGAAGAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGNTGAATTCTGNTTGGCCTGAAAGAATGCATTTAGGCCAAGAAGAAGGATTGAGTCACATATGATTGGTGGCAATGGNTCTCTGCAAGATTTTCTGGTATGCAGGGTTCAATCACAGGTGAGGAGGTTAGCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCCATGCAGCTTGGAAANAGCTAGAGACACCGACAGGGNCACCTGNTACTTGAG]

[+] EMBL CA763928             [ATTTGATGAAAAGTTTGTCAGAATAGATACAGAAAGACTATGTGAGCTGACATCGGCGGCTGATAGTCTCCAATTAAAGCCATTGGTTGATCTTACCAGTCGAGCACTTGCTCGAATAATTGAAGGAAAGACACCTGAGGAAATTCGTGATATTTTCCATTTGCCAGATGACTTAACAGAGGAAGAGAAATTGGAACCCCTGAAAAATATAAATGATGATCCCAGGATCCGTTTGTTGAATCGATTATATGCACAGAAGCGGAAAGAACTACAGGAGCGCCAGAAACTGAAGGATGTTCAAGTACAAGAAGAGCAAAAAGATGAGCGGTCACTGGATGAGATACTATGTTTTATAAATGGGGATGGAGGTTCTGGAGGTGGGAAAGCTTCTAAGAATAAGAAAAAGAACAAGAGAAGAAAGGACCATTCTAAGAACCCCCCAAAAGCTAATCCTGAACCTGTAAACAAGGAGGAAGCTACTCGTGGAGTTCCATTCAATGCGGGTACTGGTAATATTTCTAGAACACCTTGCCAAAGCTCAGATGTGCAAGATGATGTTGAGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGATCCTGCAATGCAGGAAGAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGNTGAATTCTGNTTGGCCTGAAAGAATGCATTTAGGCCAAGAAGAAGGATTGAGTCACATATGATTGGTGGCAATGGNTCTCTGCAAGATTTTCTGGTATGCAGGGTTCAATCACAGGTGAGGAGGTTAGCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCCATGCAGCTTGGAAANAGCTAGAGACACCGACAGGGNCACCTGNTACTTGAG]




>consensus_5734#0
ATTTGATGAAAAGTTTGTCAGAATAGATACAGAAAGACTATGTGAGCTGACATCGGCGGC
TGATAGTCTCCAATTAAAGCCATTGGTTGATCTTACCAGTCGAGCACTTGCTCGAATAAT
TGAAGGAAAGACACCTGAGGAAATTCGTGATATTTTCCATTTGCCAGATGACTTAACAGA
GGAAGAGAAATTGGAACCCCTGAAAAATATAAATGATGATCCCAGGATCCGTTTGTTGAA
TCGATTATATGCACAGAAGCGGAAAGAACTACAGGAGCGCCAGAAACTGAAGGATGTTCA
AGTACAAGAAGAGCAAAAAGATGAGCGGTCACTGGATGAGATACTATGTTTTATAAATGG
GGATGGAGGTTCTGGAGGTGGGAAAGCTTCTAAGAATAAGAAAAAGAACAAGAGAAGAAA
GGACCATTCTAAGAACCCCCCAAAAGCTAATCCTGAACCTGTAAACAAGGAGGAAGCTAC
TCGTGGAGTTCCATTCAATGCGGGTACTGGTAATATTTCTAGAACACCTTGCCAAAGCTC
AGATGTGCAAGATGATGTTGAGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGA
TCCTGCAATGCAGGAAGAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGNTGAATTC
TGNTTGGCCTGAAAGAATGCATTTAGGCCAAGAAGAAGGATTGAGTCACATATGATTGGT
GGCAATGGNTCTCTGCAAGATTTTCTGGTATGCAGGGTTCAATCACAGGTGAGGAGGTTA
GCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCCATGCAGCTTGGAAANAGCTA
GAGACACCGACAGGGNCACCTGNTACTTGAG

consensusID : consensus_5734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 384
fasta sequence

                              [AGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGATCCTGCAATGCAGAAGCAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGTTGAATTCTGTTTGGCCTGAAAGAATGCATTTAGGCCAAGAAAGAAGGATTGAGTCACATATGATTGGTGGCAATGGTTCTCTGCAAAGATTTTCTGGGTTCAATCACAGGTGAGAAGGTTAAGCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCACATGCAGCTTGGAAGAGAGCTAGAGACCACCGAACAGGGCCACCTGTTTACTTGAGTAAGTGCTCGCCGAAAAAGCCTCGGCGCCCAGCTTNCAGACGATGTAGATTTGTTTGCCTTGGCCATTTTCGG]

[+] EMBL AU063714             [AGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGATCCTGCAATGCAGAAGCAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGTTGAATTCTGTTTGGCCTGAAAGAATGCATTTAGGCCAAGAAAGAAGGATTGAGTCACATATGATTGGTGGCAATGGTTCTCTGCAAAGATTTTCTGGGTTCAATCACAGGTGAGAAGGTTAAGCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCACATGCAGCTTGGAAGAGAGCTAGAGACCACCGAACAGGGCCACCTGTTTACTTGAGTAAGTGCTCGCCGAAAAAGCCTCGGCGCCCAGCTTNCAGACGATGTAGATTTGTTTGCCTTGGCCATTTTCGG]
[+] EMBL AU063642             [AGTACCCCTTTGAAGATNCTGACCTTGATGATGGACTTGATCCTGCAATNCAGAAG AGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGTTGAATTCTGTTTGGCCTGAAAGAATGCATTTAGGCCAAGAAAGAAGGATTGANTCACATATGATTGGTGGCAATGGTTCTNTGCAAAGATTTTNTGGGTTCAATCACAGGTGAGAAGGTTAAGCGCCAGGNTCAACAAGCAGAAGCACAGGAAATTTNTGCACATGCAGCTTGGAAGAGAGCTAGAGACCACCGAACAGGGNCACCTGTTTt                                                                               ]




>consensus_5734#1
AGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGATCCTGCAATGCAGAAGCAGC
TTGACAGAGAAGTGGAGGACTTCGCAAGGAGGTTGAATTCTGTTTGGCCTGAAAGAATGC
ATTTAGGCCAAGAAAGAAGGATTGAGTCACATATGATTGGTGGCAATGGTTCTCTGCAAA
GATTTTCTGGGTTCAATCACAGGTGAGAAGGTTAAGCGCCAGGATCAACAAGCAGAAGCA
CAGGAAATTTGTGCACATGCAGCTTGGAAGAGAGCTAGAGACCACCGAACAGGGCCACCT
GTTTACTTGAGTAAGTGCTCGCCGAAAAAGCCTCGGCGCCCAGCTTNCAGACGATGTAGA
TTTGTTTGCCTTGGCCATTTTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5734#0      ATTTGATGAAAAGTTTGTCAGAATAGATACAGAAAGACTATGTGAGCTGACATCGGCGGC 60
consensus_5734#1      ------------------------------------------------------------
                                                                                  

consensus_5734#0      TGATAGTCTCCAATTAAAGCCATTGGTTGATCTTACCAGTCGAGCACTTGCTCGAATAAT 120
consensus_5734#1      ------------------------------------------------------------
                                                                                  

consensus_5734#0      TGAAGGAAAGACACCTGAGGAAATTCGTGATATTTTCCATTTGCCAGATGACTTAACAGA 180
consensus_5734#1      ------------------------------------------------------------
                                                                                  

consensus_5734#0      GGAAGAGAAATTGGAACCCCTGAAAAATATAAATGATGATCCCAGGATCCGTTTGTTGAA 240
consensus_5734#1      ------------------------------------------------------------
                                                                                  

consensus_5734#0      TCGATTATATGCACAGAAGCGGAAAGAACTACAGGAGCGCCAGAAACTGAAGGATGTTCA 300
consensus_5734#1      ------------------------------------------------------------
                                                                                  

consensus_5734#0      AGTACAAGAAGAGCAAAAAGATGAGCGGTCACTGGATGAGATACTATGTTTTATAAATGG 360
consensus_5734#1      ------------------------------------------------------------
                                                                                  

consensus_5734#0      GGATGGAGGTTCTGGAGGTGGGAAAGCTTCTAAGAATAAGAAAAAGAACAAGAGAAGAAA 420
consensus_5734#1      ------------------------------------------------------------
                                                                                  

consensus_5734#0      GGACCATTCTAAGAACCCCCCAAAAGCTAATCCTGAACCTGTAAACAAGGAGGAAGCTAC 480
consensus_5734#1      ------------------------------------------------------------
                                                                                  

consensus_5734#0      TCGTGGAGTTCCATTCAATGCGGGTACTGGTAATATTTCTAGAACACCTTGCCAAAGCTC 540
consensus_5734#1      ------------------------------------------------------------
                                                                                  

consensus_5734#0      AGATGTGCAAGATGATGTTGAGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGA 600
consensus_5734#1      --------------------AGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGA 40
                                          ****************************************

consensus_5734#0      TCCTGCAATGCAGGAAGAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGNTGAATTC 660
consensus_5734#1      TCCTGCAATGCAGAAGCAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGTTGAATTC 100
                      ************* *  *********************************** *******

consensus_5734#0      TGNTTGGCCTGAAAGAATGCATTTAGGCCAAGAA-GAAGGATTGAGTCACATATGATTGG 719
consensus_5734#1      TGTTTGGCCTGAAAGAATGCATTTAGGCCAAGAAAGAAGGATTGAGTCACATATGATTGG 160
                      ** ******************************* *************************

consensus_5734#0      TGGCAATGGNTCTCTGCAA-GATTTTCTGGTATGCAGGGTTCAATCACAGGTGAGGAGGT 778
consensus_5734#1      TGGCAATGGTTCTCTGCAAAGATTTTCTGG--------GTTCAATCACAGGTGAGAAGGT 212
                      ********* ********* **********        ***************** ****

consensus_5734#0      TA-GCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGC-CATGCAGCTTGGAA-AN 835
consensus_5734#1      TAAGCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCACATGCAGCTTGGAAGAG 272
                      ** *************************************** ************** * 

consensus_5734#0      AGCTAGAGAC-ACCGA-CAGGGNCACCTGNT-ACTTGAG--------------------- 871
consensus_5734#1      AGCTAGAGACCACCGAACAGGGCCACCTGTTTACTTGAGTAAGTGCTCGCCGAAAAAGCC 332
                      ********** ***** ***** ****** * *******                     

consensus_5734#0      ----------------------------------------------------
consensus_5734#1      TCGGCGCCCAGCTTNCAGACGATGTAGATTTGTTTGCCTTGGCCATTTTCGG 384