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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 867 fasta sequence
[GAGTAGAAAGGTTTTGAAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGGCAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATGGGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACATTGATAGATGGCCTCTGAACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTAACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAGGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTTGACACATCGCTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTCTGCAGTCAAAATAAGGATCACAAACCTATGATAAGTACAAATTTTTGNGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGNATATGAGAATGGTAATGATAATAAAGATGNATCATTTTNCAGATGGATGGTACTCCTATACAGGTACCCTCATGGTNCCTGGCAGAGTTAANTGATCCCATACTTGGGGGGGCTNTATTTC]
[+] EMBL CF307987 [GAGTAGAAAGGTTTTGAAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGGCAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATGGGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACATTGATAGATGGCCTCTGAACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTAACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAGGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTTGACACATCGCTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTC ]
[+] EMBL CA764197 [ ggtgaaggAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGGCAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATGGGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACAAGGATAGAGGGCCTCTGAACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTAACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCTTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTCTGCAGTCAAAATAAGGATCACAAACCTATGATAAGTACAAATTTTTGNGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGNATATGAGAATGGTAATGATAATAAAGATGNATCATTTTNCAGATGGATGGTACTCCTATACAGGTACCCTCATGGTNCCTGGCAGAGTTAANTGATCCCATACTTGGGGGGGCTNTATTTC]
consensusID : consensus_5746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[GAGATGAATGGGGGCCCTCTGGTGCTGGTTCAGTATCATACAGGGATAGAGGGCCTTTGAACTGGAGAGGCATGAAGCCACCCTCTGTTAAGGAAGTGGCCGGATTCATTTCATTTCTAACTGCACTCGGGAGTGGGCGAGGTGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCCATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTTTGCAGTCAAAATAAGGATCCCAAACCTTTGATAAGTACAAATTTTTGTGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGTATATGAGAATGTTAATGATAATAAAAGAATGTATCATTTTCCAAAAAAAAAAAAAAAA]
[-] EMBL CA762003 [GAGATGAATGGGGGCCCTCTGGTGCTGGTTCAGTATCATACAGGGATAGAGGGCCTTTGAACTGGAGAGGCATGAAGCCACCCTCTGTTAAGGAAGTGGCCGGATTCATTTCATTTCTAACTGCACTCGGGAGTGGGCGAGGTGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCCATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTTTGCAGTCAAAATAAGGATCCCAAACCTTTGATAAGTACAAATTTTTGTGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGTATATGAGAATGTTAATGATAATAAAAGAATGTATCATTTTCCAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5746#0 GAGTAGAAAGGTTTTGAAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGG 60
consensus_5746#1 ------------------------------------------------------------
consensus_5746#0 CAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATG 120
consensus_5746#1 ------------------------------------------------------------
consensus_5746#0 GGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACATTGATAGATGGCCTCTG 180
consensus_5746#1 -GAGATGAATGGGGGCCCTCTGGTGCTGGTTCAGTATCATACAGGGATAGAGGGCCTTTG 59
********** **** ***** ******************** ****** ***** **
consensus_5746#0 AACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTA 240
consensus_5746#1 AACTGGAGAGGCATGAAGCCACCCTCTGTTAAGGAAGTGGCCGGATTCATTTCATTTCTA 119
****************** ** * * ************* ********************
consensus_5746#0 ACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAG 300
consensus_5746#1 ACTGCACTCGGGAGTGGGCGAGGTGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAG 179
********* ***** ******* ************************************
consensus_5746#0 AATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAAC 360
consensus_5746#1 AATATACATTGGTATGGGAGCCATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAAC 239
********************* **************************************
consensus_5746#0 TTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAGGC 420
consensus_5746#1 TTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGC 299
********************************************************* **
consensus_5746#0 GACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTT 480
consensus_5746#1 GACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTT 359
************************************************************
consensus_5746#0 GCAGAAGGATCCGTGTGGTTGCGCTTGGTTGACACATCGCTTGCATTTCCAGGTTTCTTT 540
consensus_5746#1 GCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTT 419
***************************** ******** *********************
consensus_5746#0 GCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAA 600
consensus_5746#1 GCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAA 479
************************************************************
consensus_5746#0 GCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTCTGCAGTCAAAA 660
consensus_5746#1 GCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTTTGCAGTCAAAA 539
************************************************ ***********
consensus_5746#0 TAAGGATCACAAACCTATGATAAGTACAAATTTTTGNGTATATCTACAGTCAGAAACCTG 720
consensus_5746#1 TAAGGATCCCAAACCTTTGATAAGTACAAATTTTTGTGTATATCTACAGTCAGAAACCTG 599
******** ******* ******************* ***********************
consensus_5746#0 AGGTCCCAATAAGTTGTAGTGGTTGNATATGAGAATGGTAATGATAATAAAG--ATGNAT 778
consensus_5746#1 AGGTCCCAATAAGTTGTAGTGGTTGTATATGAGAATGTTAATGATAATAAAAGAATGTAT 659
************************* *********** ************* *** **
consensus_5746#0 CATTTTNCAGATGGATGGTACTCCTATACAGGTACCCTCATGGTNCCTGGCAGAGTTAAN 838
consensus_5746#1 CATTTTCCAAAAAAAAAAAAAAAA------------------------------------ 683
****** ** * * *
consensus_5746#0 TGATCCCATACTTGGGGGGGCTNTATTTC 867
consensus_5746#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||