cluster # 5760

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Oryza sativa
cluster # 5760 cluster # 5760 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5760#0 length = 407 sequences # 2

consensus_5760#1 length = 294 sequences # 1

consensusID : consensus_5760#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 407
fasta sequence

                              [TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTTGCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGAATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGAATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCACGTGATATTTGCCTNNNGCATCTAAATCACTTTTACGAAATGTGCGCGTCAACAAACTGATACGGCCCAAATGCCAGAAATTACCAGCATATATAGCCATATCAACTTTTGATTCGTNTATATGANNNNNGANNTANTNNNAGAAAANNNNNNNNNNNNAAAANNNA]

[+] EMBL CF195960             [TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTTGCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGAATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGAATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCACGTGATATTTGCCTNNNGCATCTAAATCACTTTTACGAAATGTGCGCGTCAACAAACTGATACGGCCCAAATGCCAGAAATTACCAGCATATATAGCCATATCAACTTTTGATTCGTNTATATGANNNNNGANNTANTNNNAGAAAANNNNNNNNNNNNAAAANNNA]
[-] EMBL CF301792             [                                                      GTTGTTGCAAGAGTACTACTACAACTATCGGTTTATCGTTCGGTGACGGTGAGACAGGGCACGTGAATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATTTGAATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCACGTGATATTTGCCTAGAGCATTTAAATCACTTTTACGAAAaaaaaaa                                                                                                                        ]




>consensus_5760#0
TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTT
GCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGA
ATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGA
ATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCA
CGTGATATTTGCCTNNNGCATCTAAATCACTTTTACGAAATGTGCGCGTCAACAAACTGA
TACGGCCCAAATGCCAGAAATTACCAGCATATATAGCCATATCAACTTTTGATTCGTNTA
TATGANNNNNGANNTANTNNNAGAAAANNNNNNNNNNNNAAAANNNA

consensusID : consensus_5760#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTTGCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGAATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGAATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCACGTGATATTTGCNTNNNNNATNNNNNTCACTTTTACGAAATGTGNNNGTCNNNN]

[+] EMBL CF196899             [TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTTGCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGAATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGAATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCACGTGATATTTGCNTNNNNNATNNNNNTCACTTTTACGAAATGTGNNNGTCNNNN]




>consensus_5760#1
TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTT
GCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGA
ATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGA
ATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCA
CGTGATATTTGCNTNNNNNATNNNNNTCACTTTTACGAAATGTGNNNGTCNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5760#0      TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTT 60
consensus_5760#1      TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTT 60
                      ************************************************************

consensus_5760#0      GCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGA 120
consensus_5760#1      GCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGA 120
                      ************************************************************

consensus_5760#0      ATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGA 180
consensus_5760#1      ATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGA 180
                      ************************************************************

consensus_5760#0      ATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCA 240
consensus_5760#1      ATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCA 240
                      ************************************************************

consensus_5760#0      CGTGATATTTGCCTNNNGCATCTAAATCACTTTTACGAAATGTGCGCGTCAACAAACTGA 300
consensus_5760#1      CGTGATATTTGCNTNNNNNATNNNNNTCACTTTTACGAAATGTGNNNGTCNNNN------ 294
                      ************ ****  **     ******************   ***          

consensus_5760#0      TACGGCCCAAATGCCAGAAATTACCAGCATATATAGCCATATCAACTTTTGATTCGTNTA 360
consensus_5760#1      ------------------------------------------------------------
                                                                                  

consensus_5760#0      TATGANNNNNGANNTANTNNNAGAAAANNNNNNNNNNNNAAAANNNA 407
consensus_5760#1      -----------------------------------------------