These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2137 fasta sequence [CATGGCGGCGCCGCTCACCGCCGCCGCCGCGCTCCGCCTCGGCCGGGGCCTCAGCCACCGCCGCGCCTTCCTCCTCCGCCGCCGCTACTCCCCCGCGCCCCTTGCTCCTTCCCCGTGCGCGGCTCCTCGATGCCTCTCCAGCGCCGCCCATCCGCCCCCGCCTCCTCCCCGCCGCCTCGCCCGCTCTGGCCCCTCCCGTCCGCTCGCCGCATCCGCCGCCACGGCCGTGTCCGAGGCGCAGACAGATTTAGAGTCTGGTCCGGTGACAGCAAGCAAGGGTCGCATTTACCATGAGACATATGGGTGCCAAATGAATGTAAACGACATGGAGATCGTGCTTTCTATCATGAAAAATGAAGGGTATGATGAAATTGTCCCTGACCCTGAGAGTGCAGAGATAATATTTATCAACACATGTGCAATCCGTGACAACGCAGAGCAGAAAGTCTGGCAGCGACTGAACTACTTTTGGTTCCTGAAAAGGCAATGGAAAGCTAATGTTGCTGCAGGGCGGTCAAGATCTCTGCGGCCTCCAAAGATTGCCGTTCTTGGGTGCATGGCAGAGCGATTGAAGGAGAAAATTCTCGATTCTGATAAGATGGTTGATGTTGTCTGTGGACCTGATGCGTATAGGGACTTGCCTAGGTTGCTGCAGGAAGTTGATTATGGGCAGAAGGGTATCAACACGCTTCTCTCACTCGAGGAGACGTATGCTGACATCACCCCAGTTAGGATCTCTGACAATTCAGTGACCGCATTTGTATCAATTATGAGGGGTTGCAACAATATGTGCTCCTTTTGTATCGTTCCTTTCACTAGAGGTAGGGAAAGGTCCCGTCCAGTGTCCTCAATTGTCCGAGAAGTTGGGGAGCTCTGGAAAGCAGGCGTGAAGGAAGTAATGCTTCTTGGTCAGAACGTAAACAGTTATAACGACACTTCTGAAGTTGAGGAATTAGAACCTGGTAAAAACTGGGAGCTCAGTGAAGGGTTTTCTAGCATGTGCAAGGTGAAGAATATGGGGTTGCGTTTTGCTGATCTCCTGGATCAGTTATCTTTGGAATACCCTGAGATGCGGTTCAGGTTTACCTCTCCGCATCCAAAGGATTACCCAGACGAGCTTCTATATTTAATGCGGGATAGGCACAATGTTTGCAAACTTATTCATATGCCAGCTCAATCAGGCAGCTCAGCAGTGCTGGAACGTATGCGTCGGGGTTATACTAGAGAGGCATACTTGGAGCTTGTGCAGAAAATCCGTAGTATCATTCCAGATGTTGGGTTAAGCAGTGATTTCATAAGTGGTTTTTGTGGAGAGACAGAAGAGGAACATGCTGAGACTCTTACCCTTGTAAGGGCTGTTGGATATGATATGGCCTACATGTTTGCATATAGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCCCGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCACCTTCCGTGAAACTACAGCGAAGATCTACGATTCTCAGGTTGGGACAGTACAGCTAGTTCTAGTCGAGGGACCGAACAAGCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGACAGGGGGCATAGGGTTTCGTTTGCGAGCGTCCCTGTACCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGACTTCATTGAGGTGAAAATCACCAAGTCATCGACAGCATCATTATCCGGGGATGTAATCGCGCGCACAAGCTTGAGCAAATTCTACAAGAATCATTCATCTGAAGCACATGCTGTTGCGGCTTAAGGATTACTAGTTGAGTTTGTAGCAGGCCACATCTCAACTGAATCAGATCCCCTTGCCATGATCTCTATCTTGAAATGACTGATAAGTTAGACCATACAATGCAATTTAACTGGTGACTCAGTTTTGTGAAGACAACTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCACCAGCATTTAGTCTGCTAGTCATGTGAAGCAATGCCTCTTCTCTTATGAAGTCTGTATTATCATGTAAAGAGTTTAAGCACTACTGGCCAGCAACATTTTTTTTTTCTTTTGCAAGTTACTGCAACTCGGCAGCGTGAGGTTTATTTATTTATTTTT] [+] EMBL AK066319 [CATGGCGGCGCCGCTCACCGCCGCCGCCGCGCTCCGCCTCGGCCGGGGCCTCAGCCACCGCCGCGCCTTCCTCCTCCGCCGCCGCTACTCCCCCGCGCCCCTTGCTCCTTCCCCGTGCGCGGCTCCTCGATGCCTCTCCAGCGCCGCCCATCCGCCCCCGCCTCCTCCCCGCCGCCTCGCCCGCTCTGGCCCCTCCCGTCCGCTCGCCGCATCCGCCGCCACGGCCGTGTCCGAGGCGCAGACAGATTTAGAGTCTGGTCCGGTGACAGCAAGCAAGGGTCGCATTTACCATGAGACATATGGGTGCCAAATGAATGTAAACGACATGGAGATCGTGCTTTCTATCATGAAAAATGAAGGGTATGATGAAATTGTCCCTGACCCTGAGAGTGCAGAGATAATATTTATCAACACATGTGCAATCCGTGACAACGCAGAGCAGAAAGTCTGGCAGCGACTGAACTACTTTTGGTTCCTGAAAAGGCAATGGAAAGCTAATGTTGCTGCAGGGCGGTCAAGATCTCTGCGGCCTCCAAAGATTGCCGTTCTTGGGTGCATGGCAGAGCGATTGAAGGAGAAAATTCTCGATTCTGATAAGATGGTTGATGTTGTCTGTGGACCTGATGCGTATAGGGACTTGCCTAGGTTGCTGCAGGAAGTTGATTATGGGCAGAAGGGTATCAACACGCTTCTCTCACTCGAGGAGACGTATGCTGACATCACCCCAGTTAGGATCTCTGACAATTCAGTGACCGCATTTGTATCAATTATGAGGGGTTGCAACAATATGTGCTCCTTTTGTATCGTTCCTTTCACTAGAGGTAGGGAAAGGTCCCGTCCAGTGTCCTCAATTGTCCGAGAAGTTGGGGAGCTCTGGAAAGCAGGCGTGAAGGAAGTAATGCTTCTTGGTCAGAACGTAAACAGTTATAACGACACTTCTGAAGTTGAGGAATTAGAACCTGGTAAAAACTGGGAGCTCAGTGAAGGGTTTTCTAGCATGTGCAAGGTGAAGAATATGGGGTTGCGTTTTGCTGATCTCCTGGATCAGTTATCTTTGGAATACCCTGAGATGCGGTTCAGGTTTACCTCTCCGCATCCAAAGGATTACCCAGACGAGCTTCTATATTTAATGCGGGATAGGCACAATGTTTGCAAACTTATTCATATGCCAGCTCAATCAGGCAGCTCAGCAGTGCTGGAACGTATGCGTCGGGGTTATACTAGAGAGGCATACTTGGAGCTTGTGCAGAAAATCCGTAGTATCATTCCAGATGTTGGGTTAAGCAGTGATTTCATAAGTGGTTTTTGTGGAGAGACAGAAGAGGAACATGCTGAGACTCTTACCCTTGTAAGGGCTGTTGGATATGATATGGCCTACATGTTTGCATATAGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCCCGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCACCTTCCGTGAAACTACAGCGAAGATCTACGATTCTCAGGTTGGGACAGTACAGCTAGTTCTAGTCGAGGGACCGAACAAGCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGACAGGGGGCATAGGGTTTCGTTTGCGAGCGTCCCTGTACCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGACTTCATTGAGGTGAAAATCACCAAGTCATCGACAGCATCATTATCCGGGGATGTAATCGCGCGCACAAGCTTGAGCAAATTCTACAAGAATCATTCATCTGAAGCACATGCTGTTGCGGCTTAAGGATTACTAGTTGAGTTTGTAGCAGGCCACATCTCAACTGAATCAGATCCCCTTGCCATGATCTCTATCTTGAAATGACTGATAAGTTAGACCATACAATGCAATTTAACTGGTGACTCAGTTTTGTGAAGACAACTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCACCAGCATTTAGTCTGCTAGTCATGTGAAGCAATGCCTCTTCTCTTATGAAGTCTGTATTATCATGTAAAGAGTTTAAGCACTACTGGCCAGCAACATTTTTTTTTTCTTTTGCAAGTTACTGCAACTCGGCAGCGTGAGGTTTATTTATTTATTTTT] [+] EMBL CB629685 [ ACCGCCGCCGCCGCGCTCCGCCTCGGCCGGGGCCTCAGCCACCGCCGCGCCTTCCTCCTCCGCCGCCGCTACTCCCCCCCGCCCCTTGCTCCTTCCCCGTGCGCGGCTCCTCGATGCCTCTCCAGCGCCGCCCATCCGCCCCCGCCTCCTCCACGCCGCCTCGCCCGCTCTGGCCCCTCCCGTCCGCTCGCCGCATCCGTCGCCACGGCCGTGTCCGAGGCGCAGACAGATTTAGAGTCTGGTCCGGTGACAGCAAGCAAGGGTCGCATTTACCATGAGACATATGGGTGCCAAATGAATGTAAACGACATGGAGATCGTGTTTTCTATCATGAAAAATGAAGGGTATGATGAAATTGTCCCTGACCCTGAGAGTGCAGAGATAATATTTATCAACACATGTGCAATCCGTGACAACGCAGAGCAGAAAGTCTGGCAGCGACTGAACTACTTTTGGTTCCTGAAAAGGCAATGGAAAGCTAATGTTGCTGCAGGGCGGTCAAGATCTCTGCGGCCTCCAAAGATTGCCGTTCTTGGGTGCATGGCGGAGCGATTGAAGGAGAAAATTCTCGATTCTGATAAGATGGTTGATGTTGTCTGTGGACCTGATGCGTATAGGGACTTGCCTAGGTTGCTGCAGGAAGTTGATTATGGGCAGAAGGGTATCAACACGCTTCTCTCACTCGAGGAGACGT ] consensusID : consensus_5762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence [AGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCCCGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCCCCTTCCGTGAAACTCCAGCGAAGATTTACGATTCTCAGGTTGGGACAGTACAGCTAGTTTTAGTCGAGGGACCGAACAAGCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGATAGGGGGCATAGGGTTTCGTTTGCGAGCGTCCCTGTCCCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGACTTCATTGAGGTGAAAATCACCAAGTCATGGACAGCATCATTATCCGGGGATGTAATCGCGCGCACAAGCTTGAGCAAGTTTTCCAAGAATCATTCATTTGAAGCACATGCTGTTGCGGCTTAAGGACTATTAGTTGAGTTTGTAGCAGGCCACATTTCAACTGAATCAGATCCCCTTGCCATGATTTTTATCTTGAAATGACTGATAAGTTAGCCCATACAATGCAATTTAACTGGTGACTCAGTTTTGTGAAGGCAATTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCACCAGCATTTAGTTTGTTAGTCAGGGGAAGCAATGCCTTTTTTCTTATGAAGTCTGTATTATCATGTAAAGAGTTTAAGCATTACTGGCCACCAACAGTTATTTTTTCTTTTGCAAAACAAAAAAAAAAAAAAAAAAAAGGA] [-] EMBL CB629686 [AGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCCCGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCCCCTTCCGTGAAACTCCAGCGAAGATTTACGATTCTCAGGTTGGGACAGTACAGCTAGTTTTAGTCGAGGGACCGAACAAGCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGATAGGGGGCATAGGGTTTCGTTTGCGAGCGTCCCTGTCCCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGACTTCATTGAGGTGAAAATCACCAAGTCATGGACAGCATCATTATCCGGGGATGTAATCGCGCGCACAAGCTTGAGCAAGTTTTCCAAGAATCATTCATTTGAAGCACATGCTGTTGCGGCTTAAGGACTATTAGTTGAGTTTGTAGCAGGCCACATTTCAACTGAATCAGATCCCCTTGCCATGATTTTTATCTTGAAATGACTGATAAGTTAGCCCATACAATGCAATTTAACTGGTGACTCAGTTTTGTGAAGGCAATTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCACCAGCATTTAGTTTGTTAGTCAGGGGAAGCAATGCCTTTTTTCTTATGAAGTCTGTATTATCATGTAAAGAGTTTAAGCATTACTGGCCACCAACAGTTATTTTTTCTTTTGCAAAACAAAAAAAAAAAAAAAAAAAAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5762#0 CATGGCGGCGCCGCTCACCGCCGCCGCCGCGCTCCGCCTCGGCCGGGGCCTCAGCCACCG 60 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 CCGCGCCTTCCTCCTCCGCCGCCGCTACTCCCCCGCGCCCCTTGCTCCTTCCCCGTGCGC 120 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 GGCTCCTCGATGCCTCTCCAGCGCCGCCCATCCGCCCCCGCCTCCTCCCCGCCGCCTCGC 180 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 CCGCTCTGGCCCCTCCCGTCCGCTCGCCGCATCCGCCGCCACGGCCGTGTCCGAGGCGCA 240 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 GACAGATTTAGAGTCTGGTCCGGTGACAGCAAGCAAGGGTCGCATTTACCATGAGACATA 300 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 TGGGTGCCAAATGAATGTAAACGACATGGAGATCGTGCTTTCTATCATGAAAAATGAAGG 360 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 GTATGATGAAATTGTCCCTGACCCTGAGAGTGCAGAGATAATATTTATCAACACATGTGC 420 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 AATCCGTGACAACGCAGAGCAGAAAGTCTGGCAGCGACTGAACTACTTTTGGTTCCTGAA 480 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 AAGGCAATGGAAAGCTAATGTTGCTGCAGGGCGGTCAAGATCTCTGCGGCCTCCAAAGAT 540 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 TGCCGTTCTTGGGTGCATGGCAGAGCGATTGAAGGAGAAAATTCTCGATTCTGATAAGAT 600 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 GGTTGATGTTGTCTGTGGACCTGATGCGTATAGGGACTTGCCTAGGTTGCTGCAGGAAGT 660 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 TGATTATGGGCAGAAGGGTATCAACACGCTTCTCTCACTCGAGGAGACGTATGCTGACAT 720 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 CACCCCAGTTAGGATCTCTGACAATTCAGTGACCGCATTTGTATCAATTATGAGGGGTTG 780 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 CAACAATATGTGCTCCTTTTGTATCGTTCCTTTCACTAGAGGTAGGGAAAGGTCCCGTCC 840 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 AGTGTCCTCAATTGTCCGAGAAGTTGGGGAGCTCTGGAAAGCAGGCGTGAAGGAAGTAAT 900 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 GCTTCTTGGTCAGAACGTAAACAGTTATAACGACACTTCTGAAGTTGAGGAATTAGAACC 960 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 TGGTAAAAACTGGGAGCTCAGTGAAGGGTTTTCTAGCATGTGCAAGGTGAAGAATATGGG 1020 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 GTTGCGTTTTGCTGATCTCCTGGATCAGTTATCTTTGGAATACCCTGAGATGCGGTTCAG 1080 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 GTTTACCTCTCCGCATCCAAAGGATTACCCAGACGAGCTTCTATATTTAATGCGGGATAG 1140 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 GCACAATGTTTGCAAACTTATTCATATGCCAGCTCAATCAGGCAGCTCAGCAGTGCTGGA 1200 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 ACGTATGCGTCGGGGTTATACTAGAGAGGCATACTTGGAGCTTGTGCAGAAAATCCGTAG 1260 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 TATCATTCCAGATGTTGGGTTAAGCAGTGATTTCATAAGTGGTTTTTGTGGAGAGACAGA 1320 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 AGAGGAACATGCTGAGACTCTTACCCTTGTAAGGGCTGTTGGATATGATATGGCCTACAT 1380 consensus_5762#1 ------------------------------------------------------------ consensus_5762#0 GTTTGCATATAGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCC 1440 consensus_5762#1 ----------AGCATGAGAGAAAAGACTCATGCTCATCGGAATTATGTGGATGATGTCCC 50 ************************************************** consensus_5762#0 CGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCACCTTCCGTGAAACTACAGC 1500 consensus_5762#1 CGATGATGTCAAGCAGAGGAGACTTGCAGAGCTAATCAGCCCCTTCCGTGAAACTCCAGC 110 **************************************** ************** **** consensus_5762#0 GAAGATCTACGATTCTCAGGTTGGGACAGTACAGCTAGTTCTAGTCGAGGGACCGAACAA 1560 consensus_5762#1 GAAGATTTACGATTCTCAGGTTGGGACAGTACAGCTAGTTTTAGTCGAGGGACCGAACAA 170 ****** ********************************* ******************* consensus_5762#0 GCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGACAGGGGGCATAGGGTTTCGTTTGC 1620 consensus_5762#1 GCGGGCTCCTGAAACAGAGATGATTGGAAAAACCGATAGGGGGCATAGGGTTTCGTTTGC 230 ************************************ *********************** consensus_5762#0 GAGCGTCCCTGTACCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGA 1680 consensus_5762#1 GAGCGTCCCTGTCCCGCATACATTTGAAGGTGATGAACTGCGCAAGCCAGTGGTTGGTGA 290 ************ *********************************************** consensus_5762#0 CTTCATTGAGGTGAAAATCACCAAGTCATCGACAGCATCATTATCCGGGGATGTAATCGC 1740 consensus_5762#1 CTTCATTGAGGTGAAAATCACCAAGTCATGGACAGCATCATTATCCGGGGATGTAATCGC 350 ***************************** ****************************** consensus_5762#0 GCGCACAAGCTTGAGCAAATTCTACAAGAATCATTCATCTGAAGCACATGCTGTTGCGGC 1800 consensus_5762#1 GCGCACAAGCTTGAGCAAGTTTTCCAAGAATCATTCATTTGAAGCACATGCTGTTGCGGC 410 ****************** ** * ************** ********************* consensus_5762#0 TTAAGGATTACTAGTTGAGTTTGTAGCAGGCCACATCTCAACTGAATCAGATCCCCTTGC 1860 consensus_5762#1 TTAAGGACTATTAGTTGAGTTTGTAGCAGGCCACATTTCAACTGAATCAGATCCCCTTGC 470 ******* ** ************************* *********************** consensus_5762#0 CATGATCTCTATCTTGAAATGACTGATAAGTTAGACCATACAATGCAATTTAACTGGTGA 1920 consensus_5762#1 CATGATTTTTATCTTGAAATGACTGATAAGTTAGCCCATACAATGCAATTTAACTGGTGA 530 ****** * ************************* ************************* consensus_5762#0 CTCAGTTTTGTGAAGACAACTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCA 1980 consensus_5762#1 CTCAGTTTTGTGAAGGCAATTAATGTGATGTGCTTTTGGCATTTGAAGCCAAAACAATCA 590 *************** *** **************************************** consensus_5762#0 CCAGCATTTAGTCTGCTAGTCATGTGAAGCAATGCCTCTTCTCTTATGAAGTCTGTATTA 2040 consensus_5762#1 CCAGCATTTAGTTTGTTAGTCAGGGGAAGCAATGCCTTTTTTCTTATGAAGTCTGTATTA 650 ************ ** ****** * ************ ** ******************* consensus_5762#0 TCATGTAAAGAGTTTAAGCACTACTGGCCAGCAACATTTTTTTTTTCTTTTGCAAGTTAC 2100 consensus_5762#1 TCATGTAAAGAGTTTAAGCATTACTGGCCACCAACAGTTATTTTTTCTTTTGCAAAACAA 710 ******************** ********* ***** ** *************** * consensus_5762#0 TGCAACTCGGCAGCGTGAGGTTTATTTATTTATTTTT 2137 consensus_5762#1 AAAAAAAAAAAAAAAAAAGGA---------------- 731 ** * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||