These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5763#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [CTTCNAGTCCATTCTCGCATCAACCAAGAGACGCCACGAGCGCGAAGAANCACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGGAGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACTACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCNCCGGTGGAGTGGTACGNGGTGCCCNACGTGACGCGGTCGTTGGCGCTGGTGGTGCACGACGTCGACGGCCCGGACCCGNACGGACCCATCGTGCCGTGNACGAACTGGGTCGT] [+] EMBL C29165 [CTTCNAGTCCATTCTCGCATCAACCAAGAGACGCCACGAGCGCGAAGAANCACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGGAGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACTACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCNCCGGTGGAGTGGTACGNGGTGCCCNACGTGACGCGGTCGTTGGCGCTGGTGGTGCACGACGTCGACGGCCCGGACCCGNACGGACCCATCGTGCCGTGNACGAACTGGGTCGT] consensusID : consensus_5763#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 293 fasta sequence [GGGCGGACGCGTGGGCGGACGCGTGGGTCGCATCAACCAAGAGACGCCACGAGCGCGAAGCGAACACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGGAGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACTACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCGNCGGTGGAGTGGTACGGGGTGCCCGACGGGACGCGGTCGCTGGCGCTGGTGGTGCACGACGTTTACGCCCNG] [+] EMBL AU093683 [GGGCGGACGCGTGGGCGGACGCGTGGGTCGCATCAACCAAGAGACGCCACGAGCGCGAAGCGAACACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGGAGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACTACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCGNCGGTGGAGTGGTACGGGGTGCCCGACGGGACGCGGTCGCTGGCGCTGGTGGTGCACGACGTTTACGCCC ] [+] EMBL C27062 [ TCAACCAAGAGACGCCACGAGCGCNAAG AATCACACGAAGCGTTCGTAAAGCAAGAACAGATTTTTTTTGTCCCGCGATGGCGCAGGANAGCCTGAGGCTGGTGTCGCACCCNATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACTACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCGCCGGTGGAGTGGTACGGGGTGCCCGACGGGACGCGGTCGCTGGCGCTGGTGGTGCACGACGTCGACGTCCNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5763#0 ------------CTTCNAGTCCATTC-TCGCATCAACCAAGAGACGCCACGAGCGCGAAG 47 consensus_5763#1 GGGCGGACGCGTGGGCGGACGCGTGGGTCGCATCAACCAAGAGACGCCACGAGCGCGAAG 60 * * * ********************************* consensus_5763#0 -AANCACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGG 106 consensus_5763#1 CGAACACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGG 120 * ******************************************************** consensus_5763#0 AGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACT 166 consensus_5763#1 AGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACT 180 ************************************************************ consensus_5763#0 ACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCNCCGGTGGAGTGGTACGNGG 226 consensus_5763#1 ACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCGNCGGTGGAGTGGTACGGGG 240 **************************************** *************** ** consensus_5763#0 TGCCCNACGTGACGCGGTCGTTGGCGCTGGTGGTGCACGACGTCGACGGCCCGGACCCGN 286 consensus_5763#1 TGCCCGACGGGACGCGGTCGCTGGCGCTGGTGGTGCACGACGTTTACGCCCNG------- 293 ***** *** ********** ********************** *** ** * consensus_5763#0 ACGGACCCATCGTGCCGTGNACGAACTGGGTCGT 320 consensus_5763#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||