These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2215 fasta sequence [TGTCCGGATTCTTCTTCTTCTTCTTCTTCCCTCGTCATCCGGGAACGCGGCGAGGAGGCGGCCTGGCTACAGGACGTCTTCTTCTTCCCTCTCGTCTTCCCCCTCTTCTCCAACCTTCTCTTCACGGGCCAAAAAAAATCTTTGGTAATTGGTACGGTCCGCCATGCGGGCGGTGCCTTGTCGAGCTCGGAAGACGGCATGAGTGCTGTAATATTGGTTGGATTCAGTTATGAAATTAAGTAGTACTGAATAATGAGATTCGGGTTGGATCAAATTTATTCGAACGGGATCGGTTTTGTTCTTTTGTTTTTGGAAAGAACCGAATAGTTTCTTTTTAACTATTTCCTCATTTTAAAGAACGGTATTATGCGATTCAAATCAAATCTACGCAAGTCAAAATTTCAACAACCAGTTGCGTCAACATGCTTTTTGTCTGGTTAAAAGAACTGAAAGTACGTACTATGCTTTTTCTCTGCTTTGATGTGTGATCTTAGTCCTTTTGTTCCTTTCTTGTTATTCTCTGAATTTCTCCTGTCCGTATTCTAAATTGGAAAATTGCATTGATCATGAGCAGTTTGCGTTGTGTGTCACAAAATCATGAGGATTCAATTAATTACTTGTTCATGAGGGTGGTGTATATGCCATTGTGATTTAGCTTTCTGAGGATTCAATTAATCTCTCATTTAGGGGATAAGAGGATAGATTCTGAAAATATATAAGATGGCACCTGGATGTCATTGTGATTTAGCTTTTAATTAATCTCTCATTTAGGGGATAAGTGGATAGATTCTGGAAATATATAAGATGACACCTTGATGTCATTGTGAAGCTTTAACATTTTTTTTAAGGTATTTAGCTTTTACTTCGATCTGAATTTCTAAACCCACCATTTTTTTCGTTTGTGTTCAACCAGAGATGCGGCATTGGCTGGACTTCGTGTGGCAGAGCGTGCCTATTGGAAGGAATTTGTGGACAGAGTATTGAAAGATACCAGCAGCATTGATATAACTGCGTCAAATATAGCTGTTCCCACAAGGCTACCTGTCGAGCTGCAAGTCCTGATCAAGGTTATGATCCACCAGATTCTTAACACTCAGCCTGGAGCAATCCCTCCACTAGCATTTCATTGGTGTTGCAATCAGCTTCTTCAGCATTTGGTGAATTCAGTAAGAACCCAAGGACAGCCAACTGTTGAACCAAATGTACATGGACATCAACGTTGCAGGGGTGCAGGTTGGTCATCGGGGATTCCCGAACGATTGGCCGATCGAAATGTTTCAGAAGATGGAGGTATTGGAGGAGTTGATTCGAGGAGGAACATTAGAGAGATGAATGGTAAAACTAAAGAGACAAATGCAAGTCGTGAGTCACCCCGAATCCTCAAGCCTACTGGTGAGCCAAACCCATCCACTGGTGGCATACGGATTCAGAATAATCGGCAAGAGCAACCTGCAGAAATGACCATTTTCCATCCATGGAAAAACATTACTGATAGAACATCAGCTTATGAGCTAAGCCATATTGACAACTTGGTTAATCATGAAGATGATGAGACAAAGAGGCAGAAAGAACAGAGTGTTCACATCACTCTGTTGTATGAGATCAACCTCATCAACGAAGAGCTTTTCGATACCGTGATCAGTATCACCGGTCACAAACATGGTGGGACAGTGATCAAATTCAGCTACAATGCAGTGTCTCTTGCACAAGACATGGAGCTACCATTTGCAGCATACGGAACGTCTCCTCTCAAGCCGGCGAAGCTATTTGTCCCAGCTGATTATCCTCGAAGCTCCCCGGTGTACGAAGATGGTGATGAACAGCACCAGGGAATGTACAGCGTGATTTCAGGCATGGTTGACAAGGTGTTCCAGCGTGCCCTGCGTAAACTCCCGGTGCCAATGTCGATCAGGGACATGGCCCGGCAGTGGGGCATCTCCGTGCGAACGGTCACCAACGGTGGAGGAACGTTCAGCTCCGGGTATGGCCAGTGGGAGAGTTGCACCGATGAGTTTGCAAGTCCATAGTCCATGGATAGACCCATGAAGTTTTGCAGGAACAAGTGATATGAAGAATAATGCTGATCTGCTGTTTTGCTGTAGGGCAGATGCAGAATCCAGTGTGAGTGTTGTGAGAGAATATTTATATTTTTGTTATGCATTAAGAGGCTGTGTGGATCATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAAT] [+] EMBL AK099682 [TGTCCGGATTCTTCTTCTTCTTCTTCTTCCCTCGTCATCCGGGAACGCGGCGAGGAGGCGGCCTGGCTACAGGACGTCTTCTTCTTCCCTCTCGTCTTCCCCCTCTTCTCCAACCTTCTCTTCACGGGCCAAAAAAAATCTTTGGTAATTGGTACGGTCCGCCATGCGGGCGGTGCCTTGTCGAGCTCGGAAGACGGCATGAGTGCTGTAATATTGGTTGGATTCAGTTATGAAATTAAGTAGTACTGAATAATGAGATTCGGGTTGGATCAAATTTATTCGAACGGGATCGGTTTTGTTCTTTTGTTTTTGGAAAGAACCGAATAGTTTCTTTTTAACTATTTCCTCATTTTAAAGAACGGTATTATGCGATTCAAATCAAATCTACGCAAGTCAAAATTTCAACAACCAGTTGCGTCAACATGCTTTTTGTCTGGTTAAAAGAACTGAAAGTACGTACTATGCTTTTTCTCTGCTTTGATGTGTGATCTTAGTCCTTTTGTTCCTTTCTTGTTATTCTCTGAATTTCTCCTGTCCGTATTCTAAATTGGAAAATTGCATTGATCATGAGCAGTTTGCGTTGTGTGTCACAAAATCATGAGGATTCAATTAATTACTTGTTCATGAGGGTGGTGTATATGCCATTGTGATTTAGCTTTCTGAGGATTCAATTAATCTCTCATTTAGGGGATAAGAGGATAGATTCTGAAAATATATAAGATGGCACCTGGATGTCATTGTGATTTAGCTTTTAATTAATCTCTCATTTAGGGGATAAGTGGATAGATTCTGGAAATATATAAGATGACACCTTGATGTCATTGTGAAGCTTTAACATTTTTTTTAAGGTATTTAGCTTTTACTTCGATCTGAATTTCTAAACCCACCATTTTTTTCGTTTGTGTTCAACCAGAGATGCGGCATTGGCTGGACTTCGTGTGGCAGAGCGTGCCTATTGGAAGGAATTTGTGGACAGAGTATTGAAAGATACCAGCAGCATTGATATAACTGCGTCAAATATAGCTGTTCCCACAAGGCTACCTGTCGAGCTGCAAGTCCTGATCAAGGTTATGATCCACCAGATTCTTAACACTCAGCCTGGAGCAATCCCTCCACTAGCATTTCATTGGTGTTGCAATCAGCTTCTTCAGCATTTGGTGAATTCAGTAAGAACCCAAGGACAGCCAACTGTTGAACCAAATGTACATGGACATCAACGTTGCAGGGGTGCAGGTTGGTCATCGGGGATTCCCGAACGATTGGCCGATCGAAATGTTTCAGAAGATGGAGGTATTGGAGGAGTTGATTCGAGGAGGAACATTAGAGAGATGAATGGTAAAACTAAAGAGACAAATGCAAGTCGTGAGTCACCCCGAATCCTCAAGCCTACTGGTGAGCCAAACCCATCCACTGGTGGCATACGGATTCAGAATAATCGGCAAGAGCAACCTGCAGAAATGACCATTTTCCATCCATGGAAAAACATTACTGATAGAACATCAGCTTATGAGCTAAGCCATATTGACAACTTGGTTAATCATGAAGATGATGAGACAAAGAGGCAGAAAGAACAGAGTGTTCACATCACTCTGTTGTATGAGATCAACCTCATCAACGAAGAGCTTTTCGATACCGTGATCAGTATCACCGGTCACAAACATGGTGGGACAGTGATCAAATTCAGCTACAATGCAGTGTCTCTTGCACAAGACATGGAGCTACCATTTGCAGCATACGGAACGTCTCCTCTCAAGCCGGCGAAGCTATTTGTCCCAGCTGATTATCCTCGAAGCTCCCCGGTGTACGAAGATGGTGATGAACAGCACCAGGGAATGTACAGCGTGATTTCAGGCATGGTTGACAAGGTGTTCCAGCGTGCCCTGCGTAAACTCCCGGTGCCAATGTCGATCAGGGACATGGCCCGGCAGTGGGGCATCTCCGTGCGAACGGTCACCAACGGTGGAGGAACGTTCAGCTCCGGGTATGGCCAGTGGGAGAGTTGCACCGATGAGTTTGCAAGTCCATAGTCCATGGATAGACCCATGAAGTTTTGCAGGAACAAGTGATATGAAGAATAATGCTGATCTGCTGTTTTGCTGTAGGGCAGATGCAGAATCCAGTGTGAGTGTTGTGAGAGAATATTTATATTTTTGTTATGCATTAAGAGGCTGTGTGGATCATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAAT] [+] EMBL AK108456 [ AAAGAGACAAATGCAAGTCGTGAGTCACCCCGAATCCTCAAGCCTACTGGTGAGCCAAACCCATCCACTGGTGGCATACGGATTCAGAATAATCGGCAAGAGCAACCTGCAGAAATGACCATTTTCCATCCATGGAAAAACATTACTGATAGAACATCAGCTTATGAGCTAAGCCATATTGACAACTTGGTTAATCATGAAGATGATGAGACAAAGAGGCAGAAAGAACAGAGTGTTCACATCACTCTGTTGTATGAGATCAACCTCATCAACGAAGAGCTTTTCGATACCGTGATCAGTATCACCGGTCACAAACATGGTGGGACAGTGATCAAATTCAGCTACAATGCAGTGTCTCTTGCACAAGACATGGAGCTACCATTTGCAGCATACGGAACGTCTCCTCTCAAGCCGGCGAAGCTATTTGTCCCAGCTGATTATCCTCGAAGCTCCCCGGTGTACGAAGATGGTGATGAACAGCACCAGGGAATGTACAGCGTGATTTCAGGCATGGTTGACAAGGTGTTCCAGCGTGCCCTGCGTAAACTCCCGGTGCCAATGTCGATCAGGGACATGGCCCGGCAGTGGGGCATCTCCGTGCGAACGGTCACCAACGGTGGAGGAACGTTCGGCTCCGGGTATGGCCAGTGGGAGAGTTGCACCGATGAGTTTGCAAGTCCATAGTCCATGGATAGACCCATGAAGTTTTGCAGGAACAAGTGATATGAAGAATAATGCTGATCTGCTGTTTTGCTGTAGGGCAGATGCAGAATCCAGTGTGAGTGTTGTGAGAGAATATTTATATTTTTGTTATGCATTAAGAGGCTGTGTGGATCATCT ] consensusID : consensus_5764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [AAAGAACAGAGTGTTCCCATCACTCTGTTGTATGAGATCAACCCTCATCAACGAAGAGCTTTTCGATTCCGTGATCAGTATCACCGGTCACAAACATGGTGGGGCAGTGATCAAATTTAGGTTCAATGCAGTGTCTTTTGCCCGAGACAAGGAGCTTCCCTTTGCAGCATTCGGAACGTTTCCTCTCAAGCCGGGGAAGCTATTTGTTCCAACTGATTATCCTTGAAGCTTCCCGGTGTTCGAAGATGGTTATTAACAGCCCCCGGGAATGTTCAGCGTGATTTCAGGCATGGTTGACAAGGTGTTCCAGCGTGCCCTGGGTTAACTCCCGGTGCCAATGTCGATCAGGGACATGGCCCGGCAATGGGGCATTTCCGTGCGAACGGTCCCCAACGGTGGAGGAACGTTCAGCTCCGGGTATGGCCAGTGGGAAAGTTGCCCCCATGAGTTTGCAAGTCCATTGTCCCTGGATAGACCCCTGAAGTTTTGCCGGAACCAATGATTTGAAGAATAATGCTGATTTGCTGTTTTGCCGTAGGGCAGATGCAAAATCCCGTGTGAGTGTTGTGAAAAAATATTTATATTTTTGTTTTGCCTTAAAAGGCTGGGTGGATTATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAATATTTTTTTCTTCGGTTGTGGATTGTGGTTAAAAAAAAAAAAAAAA] [-] EMBL CA762033 [AAAGAACAGAGTGTTCCCATCACTCTGTTGTATGAGATCAACCCTCATCAACGAAGAGCTTTTCGATTCCGTGATCAGTATCACCGGTCACAAACATGGTGGGGCAGTGATCAAATTTAGGTTCAATGCAGTGTCTTTTGCCCGAGACAAGGAGCTTCCCTTTGCAGCATTCGGAACGTTTCCTCTCAAGCCGGGGAAGCTATTTGTTCCAACTGATTATCCTTGAAGCTTCCCGGTGTTCGAAGATGGTTATTAACAGCCCCCGGGAATGTTCAGCGTGATTTCAGGCATGGTTGACAAGGTGTTCCAGCGTGCCCTGGGTTAACTCCCGGTGCCAATGTCGATCAGGGACATGGCCCGGCAATGGGGCATTTCCGTGCGAACGGTCCCCAACGGTGGAGGAACGTTCAGCTCCGGGTATGGCCAGTGGGAAAGTTGCCCCCATGAGTTTGCAAGTCCATTGTCCCTGGATAGACCCCTGAAGTTTTGCCGGAACCAATGATTTGAAGAATAATGCTGATTTGCTGTTTTGCCGTAGGGCAGATGCAAAATCCCGTGTGAGTGTTGTGAAAAAATATTTATATTTTTGTTTTGCCTTAAAAGGCTGGGTGGATTATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAATATTTTTTTCTTCGGTTGTGGATTGTGGTTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5764#0 TGTCCGGATTCTTCTTCTTCTTCTTCTTCCCTCGTCATCCGGGAACGCGGCGAGGAGGCG 60 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 GCCTGGCTACAGGACGTCTTCTTCTTCCCTCTCGTCTTCCCCCTCTTCTCCAACCTTCTC 120 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 TTCACGGGCCAAAAAAAATCTTTGGTAATTGGTACGGTCCGCCATGCGGGCGGTGCCTTG 180 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 TCGAGCTCGGAAGACGGCATGAGTGCTGTAATATTGGTTGGATTCAGTTATGAAATTAAG 240 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 TAGTACTGAATAATGAGATTCGGGTTGGATCAAATTTATTCGAACGGGATCGGTTTTGTT 300 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 CTTTTGTTTTTGGAAAGAACCGAATAGTTTCTTTTTAACTATTTCCTCATTTTAAAGAAC 360 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 GGTATTATGCGATTCAAATCAAATCTACGCAAGTCAAAATTTCAACAACCAGTTGCGTCA 420 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 ACATGCTTTTTGTCTGGTTAAAAGAACTGAAAGTACGTACTATGCTTTTTCTCTGCTTTG 480 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 ATGTGTGATCTTAGTCCTTTTGTTCCTTTCTTGTTATTCTCTGAATTTCTCCTGTCCGTA 540 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 TTCTAAATTGGAAAATTGCATTGATCATGAGCAGTTTGCGTTGTGTGTCACAAAATCATG 600 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 AGGATTCAATTAATTACTTGTTCATGAGGGTGGTGTATATGCCATTGTGATTTAGCTTTC 660 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 TGAGGATTCAATTAATCTCTCATTTAGGGGATAAGAGGATAGATTCTGAAAATATATAAG 720 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 ATGGCACCTGGATGTCATTGTGATTTAGCTTTTAATTAATCTCTCATTTAGGGGATAAGT 780 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 GGATAGATTCTGGAAATATATAAGATGACACCTTGATGTCATTGTGAAGCTTTAACATTT 840 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 TTTTTAAGGTATTTAGCTTTTACTTCGATCTGAATTTCTAAACCCACCATTTTTTTCGTT 900 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 TGTGTTCAACCAGAGATGCGGCATTGGCTGGACTTCGTGTGGCAGAGCGTGCCTATTGGA 960 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 AGGAATTTGTGGACAGAGTATTGAAAGATACCAGCAGCATTGATATAACTGCGTCAAATA 1020 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 TAGCTGTTCCCACAAGGCTACCTGTCGAGCTGCAAGTCCTGATCAAGGTTATGATCCACC 1080 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 AGATTCTTAACACTCAGCCTGGAGCAATCCCTCCACTAGCATTTCATTGGTGTTGCAATC 1140 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 AGCTTCTTCAGCATTTGGTGAATTCAGTAAGAACCCAAGGACAGCCAACTGTTGAACCAA 1200 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 ATGTACATGGACATCAACGTTGCAGGGGTGCAGGTTGGTCATCGGGGATTCCCGAACGAT 1260 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 TGGCCGATCGAAATGTTTCAGAAGATGGAGGTATTGGAGGAGTTGATTCGAGGAGGAACA 1320 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 TTAGAGAGATGAATGGTAAAACTAAAGAGACAAATGCAAGTCGTGAGTCACCCCGAATCC 1380 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 TCAAGCCTACTGGTGAGCCAAACCCATCCACTGGTGGCATACGGATTCAGAATAATCGGC 1440 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 AAGAGCAACCTGCAGAAATGACCATTTTCCATCCATGGAAAAACATTACTGATAGAACAT 1500 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 CAGCTTATGAGCTAAGCCATATTGACAACTTGGTTAATCATGAAGATGATGAGACAAAGA 1560 consensus_5764#1 ------------------------------------------------------------ consensus_5764#0 GGCAGAAAGAACAGAGTGTTCACATCACTCTGTTGTATGAGATCAACC-TCATCAACGAA 1619 consensus_5764#1 -----AAAGAACAGAGTGTTCCCATCACTCTGTTGTATGAGATCAACCCTCATCAACGAA 55 **************** ************************** *********** consensus_5764#0 GAGCTTTTCGATACCGTGATCAGTATCACCGGTCACAAACATGGTGGGACAGTGATCAAA 1679 consensus_5764#1 GAGCTTTTCGATTCCGTGATCAGTATCACCGGTCACAAACATGGTGGGGCAGTGATCAAA 115 ************ *********************************** *********** consensus_5764#0 TTCAGCTACAATGCAGTGTCTCTTGCACAAGACATGGAGCTACCATTTGCAGCATACGGA 1739 consensus_5764#1 TTTAGGTTCAATGCAGTGTCTTTTGCCCGAGACAAGGAGCTTCCCTTTGCAGCATTCGGA 175 ** ** * ************* **** * ***** ****** ** ********** **** consensus_5764#0 ACGTCTCCTCTCAAGCCGGCGAAGCTATTTGTCCCAGCTGATTATCCTCGAAGCTCCCCG 1799 consensus_5764#1 ACGTTTCCTCTCAAGCCGGGGAAGCTATTTGTTCCAACTGATTATCCTTGAAGCTTCCCG 235 **** ************** ************ *** *********** ****** **** consensus_5764#0 GTGTACGAAGATGGTGATGAACAGCACCAGGGAATGTACAGCGTGATTTCAGGCATGGTT 1859 consensus_5764#1 GTGTTCGAAGATGGTTATTAACAGCCCCCGGGAATGTTCAGCGTGATTTCAGGCATGGTT 295 **** ********** ** ****** ** ******** ********************** consensus_5764#0 GACAAGGTGTTCCAGCGTGCCCTGCGTAAACTCCCGGTGCCAATGTCGATCAGGGACATG 1919 consensus_5764#1 GACAAGGTGTTCCAGCGTGCCCTGGGTTAACTCCCGGTGCCAATGTCGATCAGGGACATG 355 ************************ ** ******************************** consensus_5764#0 GCCCGGCAGTGGGGCATCTCCGTGCGAACGGTCACCAACGGTGGAGGAACGTTCAGCTCC 1979 consensus_5764#1 GCCCGGCAATGGGGCATTTCCGTGCGAACGGTCCCCAACGGTGGAGGAACGTTCAGCTCC 415 ******** ******** *************** ************************** consensus_5764#0 GGGTATGGCCAGTGGGAGAGTTGCACCGATGAGTTTGCAAGTCCATAGTCCATGGATAGA 2039 consensus_5764#1 GGGTATGGCCAGTGGGAAAGTTGCCCCCATGAGTTTGCAAGTCCATTGTCCCTGGATAGA 475 ***************** ****** ** ****************** **** ******** consensus_5764#0 CCCATGAAGTTTTGCAGGAACAAGTGATATGAAGAATAATGCTGATCTGCTGTTTTGCTG 2099 consensus_5764#1 CCCCTGAAGTTTTGCCGGAACCAATGATTTGAAGAATAATGCTGATTTGCTGTTTTGCCG 535 *** *********** ***** * **** ***************** *********** * consensus_5764#0 TAGGGCAGATGCAGAATCCAGTGTGAGTGTTGTGAGAGAATATTTATATTTTTGTTATGC 2159 consensus_5764#1 TAGGGCAGATGCAAAATCCCGTGTGAGTGTTGTGAAAAAATATTTATATTTTTGTTTTGC 595 ************* ***** *************** * ****************** *** consensus_5764#0 ATTAAGAGGCTGTGTGGATCATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAAT---- 2215 consensus_5764#1 CTTAAAAGGCTGGGTGGATTATCTGTTTTTGATTAAACCGGTTTTGCTTAAAAAATATTT 655 **** ****** ****** ************************************ consensus_5764#0 ----------------------------------------- consensus_5764#1 TTTTCTTCGGTTGTGGATTGTGGTTAAAAAAAAAAAAAAAA 696 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||