cluster # 5771

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Oryza sativa
cluster # 5771 cluster # 5771 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5771#0 length = 906 sequences # 1

consensus_5771#1 length = 560 sequences # 1
consensus_5771#2 length = 252 sequences # 1

consensusID : consensus_5771#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 906
fasta sequence

                              [CACTCGAAGGCTCGCTCCACTCGAAGACCGAGGCGTCCACCACCACCACCACCACTCGAGTTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTGCTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGCTATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGGTGCGTGGCTGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATCCTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAACCGAGAATTAATTAATTAAATCGTCTGGCATGGTAGATTTTGCTGCGTGCGTAGAAAAGAGATTTCCTAAATTTGGGGATACTAGTGGACGATCGATCGAGCGCCTATTCTGTCGATCGGTTCGTGGATTCATGGCTTGAGCTCATGAGTTGGTTGGTACGTTCCCGCGTTTTGTAGATCGGACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGCGGCGGCGCCAAGGACTCGGGCAGCTTCGAGTGCAACATCTGCCTGGAGCTAGCCCAGGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCTCCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAAGCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGCCGGCGTCCAG]

[+] EMBL AK070278             [CACTCGAAGGCTCGCTCCACTCGAAGACCGAGGCGTCCACCACCACCACCACCACTCGAGTTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTGCTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGCTATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGGTGCGTGGCTGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATCCTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAACCGAGAATTAATTAATTAAATCGTCTGGCATGGTAGATTTTGCTGCGTGCGTAGAAAAGAGATTTCCTAAATTTGGGGATACTAGTGGACGATCGATCGAGCGCCTATTCTGTCGATCGGTTCGTGGATTCATGGCTTGAGCTCATGAGTTGGTTGGTACGTTCCCGCGTTTTGTAGATCGGACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGCGGCGGCGCCAAGGACTCGGGCAGCTTCGAGTGCAACATCTGCCTGGAGCTAGCCCAGGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCTCCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAAGCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGCCGGCGTCCAG]




>consensus_5771#0
CACTCGAAGGCTCGCTCCACTCGAAGACCGAGGCGTCCACCACCACCACCACCACTCGAG
TTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTG
CTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGC
TATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACT
TGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCG
TTTACACGGTGCGTGGCTGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATC
CTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAAC
CGAGAATTAATTAATTAAATCGTCTGGCATGGTAGATTTTGCTGCGTGCGTAGAAAAGAG
ATTTCCTAAATTTGGGGATACTAGTGGACGATCGATCGAGCGCCTATTCTGTCGATCGGT
TCGTGGATTCATGGCTTGAGCTCATGAGTTGGTTGGTACGTTCCCGCGTTTTGTAGATCG
GACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGC
GGCGGCGCCAAGGACTCGGGCAGCTTCGAGTGCAACATCTGCCTGGAGCTAGCCCAGGAC
CCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCTCCAC
GTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAAGCTC
GTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGCCGGC
GTCCAG

consensusID : consensus_5771#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [AGTTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTGCTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGCTATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGATCGGACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGCGGCGGCGCCAAGGACTCGGGCAGCTTCGAGTGCAACATCTGCCTGGAGCTAGCCCAGGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCTCCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAAGCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGCCGGCGTCCAG]

[+] EMBL CB655869             [AGTTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTGCTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGCTATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGATCGGACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGCGGCGGCGCCAAGGACTCGGGCAGCTTCGAGTGCAACATCTGCCTGGAGCTAGCCCAGGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCTCCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAAGCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGCCGGCGTCCAG]




>consensus_5771#1
AGTTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTC
TGCTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGAC
GCTATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGA
CTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGT
CGTTTACACGATCGGACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCG
CCGTCGATGGCGGCGGCGGCGCCAAGGACTCGGGCAGCTTCGAGTGCAACATCTGCCTGG
AGCTAGCCCAGGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCT
ACGAGTGGCTCCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCG
AGGAGGAGAAGCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCA
GGTCGGTGGCCGGCGTCCAG

consensusID : consensus_5771#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [GCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGGTGCGTGGCTGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATCCTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAACCGAGAATTAATTAATTAAAAAAAAAAAAA]

[+] EMBL CF316516             [GCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGGTGCGTGGCTGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATCCTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAACCGAGAATTAATTAATTAAAAAAAAAAAAA]




>consensus_5771#2
GCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCG
CGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGGTGCGTGGC
TGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATCCTACCTGTTCGGGATTG
CTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAACCGAGAATTAATTAATTA
AAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5771#0      CACTCGAAGGCTCGCTCCACTCGAAGACCGAGGCGTCCACCACCACCACCACCACTCGAG 60
consensus_5771#1      ----------------------------------------------------------AG 2
consensus_5771#2      ------------------------------------------------------------
                                                                                  

consensus_5771#0      TTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTG 120
consensus_5771#1      TTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTG 62
consensus_5771#2      ------------------------------------------------------------
                                                                                  

consensus_5771#0      CTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGC 180
consensus_5771#1      CTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGC 122
consensus_5771#2      ------------------------------------------------------------
                                                                                  

consensus_5771#0      TATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACT 240
consensus_5771#1      TATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACT 182
consensus_5771#2      ------------------------------------------------------------
                                                                                  

consensus_5771#0      TGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCG 300
consensus_5771#1      TGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCG 242
consensus_5771#2      ------------------------------------------------------------
                                                                                  

consensus_5771#0      TTTACACGGTGCGTGGCTGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATC 360
consensus_5771#1      TTTACACG---------------------------------------------------- 250
consensus_5771#2      ------------------------------------------------------------
                                                                                  

consensus_5771#0      CTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAAC 420
consensus_5771#1      ------------------------------------------------------------
consensus_5771#2      ------------------------------------------------------------
                                                                                  

consensus_5771#0      CGAGAATTAATTAATTAAATCGTCTGGCATGGTAGATTTTGCTGCGTGCGTAGAAAAGAG 480
consensus_5771#1      ------------------------------------------------------------
consensus_5771#2      ------------------------------------------------------------
                                                                                  

consensus_5771#0      ATTTCCTAAATTTGGGGATACTAGTGGACGATCGATCGAGCGCCTATTCTGTCGATCGGT 540
consensus_5771#1      ------------------------------------------------------------
consensus_5771#2      ------------------------------------------------------------
                                                                                  

consensus_5771#0      TCGTGGATTCATGGCTTGAGCTCATGAGTTGGTTGGTACGTTCCCGCGTTTTGTAGATCG 600
consensus_5771#1      --------------------------------------------------------ATCG 254
consensus_5771#2      ------------------------------------------------------------
                                                                                  

consensus_5771#0      GACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGC 660
consensus_5771#1      GACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGC 314
consensus_5771#2      ------------------------------------GCGTGGATTTGGGTGAATAGTGGC 24
                                                           **  **     **  ** * ***

consensus_5771#0      G-GCGGCGCCAAGG--ACTCGGGCAGC-TTCGAGTGCAACATCTGCCTGGAGCTAGCCCA 716
consensus_5771#1      G-GCGGCGCCAAGG--ACTCGGGCAGC-TTCGAGTGCAACATCTGCCTGGAGCTAGCCCA 370
consensus_5771#2      TCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGA 84
                        *   ** ** **  *** * ** *   ****  **       ** **  * *   * *

consensus_5771#0      GGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCT 776
consensus_5771#1      GGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCT 430
consensus_5771#2      ----CCGGTCCAGATCCGCGTCGTTTACACGGTGCG-TGGCTGTTCCTCAATCTACGGGT 139
                          ** ***   * ** *  **   **    *  * **** ** **** *     ** *

consensus_5771#0      CCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAA 836
consensus_5771#1      CCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAA 490
consensus_5771#2      GAGTGTTTTCTGAACGAATCGATCCTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAA 199
                          **   *         **    * **   ** * *  **  *       **  * **

consensus_5771#0      GCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGC 896
consensus_5771#1      GCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGC 550
consensus_5771#2      GAGAGTGATGTTGTTTCAC-GCAACCGAGAATTAATTAATTAAAAAAAAAAAAA------ 252
                      *   **     * *    * **  *   *  *  *   **         *          

consensus_5771#0      CGGCGTCCAG 906
consensus_5771#1      CGGCGTCCAG 560
consensus_5771#2      ----------