cluster # 5774

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Oryza sativa
cluster # 5774 cluster # 5774 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5774#0 length = 400 sequences # 1

consensus_5774#1 length = 329 sequences # 2

consensusID : consensus_5774#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAACCAAGGGTTTCATCATAAGTCATAACACCAAATTTTTTTAACCCAACATAAAAAAAACCCTAATAATGCAATAAAATAACTTGAAGCCCGGATCACTAACAAATTTCCCCCTTAATCAACCTCCTCAATTTTGGGGCCAACACCCTTGCCCCCAACCGGGGGAACATTGTCCTTTTCCATGCCCCCGGCCATTTCCCCCCCAACAACCTGGTACATTTTGGCAAAAATGGGGTTGCAAATCCCCTCCAACTCCTTTATTTTGTCATCAAACTCATAAACCTCAACAAGCTGGTTGCCCCCCACCCACTGGATGGCCTGGTCAATGGCATCCTCAATCTTTTTTTTGTC]

[+] EMBL CF332172             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAACCAAGGGTTTCATCATAAGTCATAACACCAAATTTTTTTAACCCAACATAAAAAAAACCCTAATAATGCAATAAAATAACTTGAAGCCCGGATCACTAACAAATTTCCCCCTTAATCAACCTCCTCAATTTTGGGGCCAACACCCTTGCCCCCAACCGGGGGAACATTGTCCTTTTCCATGCCCCCGGCCATTTCCCCCCCAACAACCTGGTACATTTTGGCAAAAATGGGGTTGCAAATCCCCTCCAACTCCTTTATTTTGTCATCAAACTCATAAACCTCAACAAGCTGGTTGCCCCCCACCCACTGGATGGCCTGGTCAATGGCATCCTCAATCTTTTTTTTGTC]




>consensus_5774#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAACCAAGGGT
TTCATCATAAGTCATAACACCAAATTTTTTTAACCCAACATAAAAAAAACCCTAATAATG
CAATAAAATAACTTGAAGCCCGGATCACTAACAAATTTCCCCCTTAATCAACCTCCTCAA
TTTTGGGGCCAACACCCTTGCCCCCAACCGGGGGAACATTGTCCTTTTCCATGCCCCCGG
CCATTTCCCCCCCAACAACCTGGTACATTTTGGCAAAAATGGGGTTGCAAATCCCCTCCA
ACTCCTTTATTTTGTCATCAAACTCATAAACCTCAACAAGCTGGTTGCCCCCCACCCACT
GGATGGCCTGGTCAATGGCATCCTCAATCTTTTTTTTGTC

consensusID : consensus_5774#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 329
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCCCCAACCCAGTTTTTTAATTCAAAAGGACTGCCCAAACAAACCAAGGGTTTTATCATAAGTCATAACACCAAAGTTTTTTAACCCAACATAAAAAAAACCCTAATAATGCAATAAAATAACTTGAAGCCCGGATCACTAACAAATTTCCCCCTTAATCAACCTCCTCAATTTTGGGGCCAACACCGTTGCCCCCAGCCGGGGGAACATTGTCCTTTTCCATGCCGCCGGCCATGTCCGCCCCAACGCCCTGGTACATTTTGGCAAAAATGGGGTTGCA]

[+] EMBL CF315192             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCCCCAACCCAGTTTTTTAATTCAAAAGGACTGCCCAAACAAACCAAGGGTTTTATCATAAGTCATAACACCAAAGTTTTTTAACCCAACATAAAAAAAACCCTAATAATGCAATAAAATAACTTGAAGCCCGGATCACTAACAAATTTCCCCCTTAATCAACCTCCTCAATTTTGGG                                                                                                      ]
[+] EMBL CF329161             [    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGCCCCCAACCCAGTTTTTTAATTCAAAAGGACTGCCCAAACAAACCAAGGGTTTTATCATAAGTCACAGCACCAAAGTTTTTTAACCCAACATAAAAAAAACCCTAATAATGCAATAAAATAACTTGAAGCGCGGATCACTAACAAATTTCCCGCTTAATCAACCTCCTCAATCTTGGGGCCAACACCGTTGCCCCCAGCCGGGGGAACATTGTCCTTTTCCATGCCGCCGGCCATGTCCGCCCCAACGCCCTGGTACATTTTGGCAAAAATGGGGTTGCA]




>consensus_5774#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCCCCAACCCA
GTTTTTTAATTCAAAAGGACTGCCCAAACAAACCAAGGGTTTTATCATAAGTCATAACAC
CAAAGTTTTTTAACCCAACATAAAAAAAACCCTAATAATGCAATAAAATAACTTGAAGCC
CGGATCACTAACAAATTTCCCCCTTAATCAACCTCCTCAATTTTGGGGCCAACACCGTTG
CCCCCAGCCGGGGGAACATTGTCCTTTTCCATGCCGCCGGCCATGTCCGCCCCAACGCCC
TGGTACATTTTGGCAAAAATGGGGTTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5774#0      -----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT--------------- 40
consensus_5774#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCCCCAACCCA 60
                           ****************************************               

consensus_5774#0      -TTTTTTAA-------------------CAAACCAAGGGTTTCATCATAAGTCATAACAC 80
consensus_5774#1      GTTTTTTAATTCAAAAGGACTGCCCAAACAAACCAAGGGTTTTATCATAAGTCATAACAC 120
                       ********                   ************** *****************

consensus_5774#0      CAAATTTTTTTAACCCAACATAAAAAAAACCCTAATAATGCAATAAAATAACTTGAAGCC 140
consensus_5774#1      CAAAGTTTTTTAACCCAACATAAAAAAAACCCTAATAATGCAATAAAATAACTTGAAGCC 180
                      **** *******************************************************

consensus_5774#0      CGGATCACTAACAAATTTCCCCCTTAATCAACCTCCTCAATTTTGGGGCCAACACCCTTG 200
consensus_5774#1      CGGATCACTAACAAATTTCCCCCTTAATCAACCTCCTCAATTTTGGGGCCAACACCGTTG 240
                      ******************************************************** ***

consensus_5774#0      CCCCCAACCGGGGGAACATTGTCCTTTTCCATGCCCCCGGCCATTTCCCCCCCAACAACC 260
consensus_5774#1      CCCCCAGCCGGGGGAACATTGTCCTTTTCCATGCCGCCGGCCATGTCCGCCCCAACGCCC 300
                      ****** **************************** ******** *** *******  **

consensus_5774#0      TGGTACATTTTGGCAAAAATGGGGTTGCAAATCCCCTCCAACTCCTTTATTTTGTCATCA 320
consensus_5774#1      TGGTACATTTTGGCAAAAATGGGGTTGCA------------------------------- 329
                      *****************************                               

consensus_5774#0      AACTCATAAACCTCAACAAGCTGGTTGCCCCCCACCCACTGGATGGCCTGGTCAATGGCA 380
consensus_5774#1      ------------------------------------------------------------
                                                                                  

consensus_5774#0      TCCTCAATCTTTTTTTTGTC 400
consensus_5774#1      --------------------