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Oryza sativa
cluster # 5781 cluster # 5781       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5781#0 length = 1470 sequences # 3  

consensusID : consensus_5781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1470
fasta sequence
                              [CAAGAAACCATCTGTCGCTTTTGACCCCGGGAAGCAGCAGCAGCAGCAGCGGCGGCGGCGTATCGGGGCGTAACGGAATCGAGGTGTGTTGCCGCTATATAAAGAGGAAGAAAATAGGCCCCAAACCAAACCACCATACCCTACTACAAACCATAGGCATCGCCGGCAAGGGAGGTCGGAGGAAGAAGAAAGGGTCGTCGAGGTGTTCTTGAATTCTGAATTTCTGATCAAGTCGATCGTTCGCCGGCGACGGCAAAGGTGGTAACTGGTAGTACTATATATGACGACGTCGATGGAGAAGCCCCGGCAGGTGGTGCGGAAGTTCCTGGCGCGGCCGCAGCACGAGGGCGTCGGCGCCGTCGTTCGCCGGAGCATCGGGAGGTTTGAGCTGAGGTACTTCGATCCGTTCCTCGTCCTGGACGAGTTCTCAGTGTCTGCTCCGGCTGGGTTCCCTGACCATCCACACAGAGGTTTCGAGACCGTCACTTACATGCTCGAGGGAGCCGTGACGCACGAGGACTTCGAGGGCCACCGTGGCACGATCAAGGCCGGCGACGTGCAGTGGATGACGGCCGGACGCGGCATCGTGCACTCGGAGATGCCGGCGGGGCCCGGCACCTCCAGGGGCCTCCAGCTCTGGGTCAACCTCTCCTCCCACAACAAGATGATCGAGCCGGGGTACCAGGAGATACAGAGCAAGGACATCGCGAGCACGACGTCGGACGGCGTGACGGTGCGGGTGATCGCCGGGCAGTCGATGGGCGCCCGGTCGCCGGTGCGCACGCGGACGCCGACCATGTACCTGGACTTCACGGTCCGCCCCCACGCGGCGGCGCGGCAGCCGGTGTGCGCGACGTGGAACGCGTTCGCGTACGTGCTGGAGGGGGAGGGCGTGTTCGGCGGCGGCGGCGGCGACAAGGCCGGGGCGCACCACCTGCTGCTGCTCGGCCAGGGCGACGGCGTCGAGGTGTGGAACAGGTCGGACAAGCCGCTCCGGTTCCTGCTCATCGCCGGCGAGCCCATCGGCGAGCCCGTGGCGCAGCTGGGGCCCTTCGTCATGAACACCGAGGAGGAGATCGACATGACCATCAACGACTTCGAGTTCAGCATCAATGGCTTCGAGAAGGCCAAGCACTGGAAGTCTCAGGCGCTGGTGGCGCTGGGCTTAGAGTAGTAGGGTGCAACCATGGGACGACACGACATGTCGACATATGCTCTGAACGAAGGGAAAAAAAATGGAATAGTTCTTTCTCTCATGATACGAGGTTGTTTTATTTATTTGTTTTTTTTCTCTTCCAAACAAATAGCGATCACTTTGTGTACATATCCGGCATAAGGTTGCTGCTTGCTTTTCAATTAGGCAGGTGCTTCAAATCTTCGGCCCAATGACTAAAAATCATGTACTTACTCCACAAGTTCATAAACAAGTCCTTTTGGACTTTCACTGTGTCTAATGCAAGATTTGTTTTT]

[+] EMBL AK109548             [CAAGAAACCATCTGTCGCTTTTGACCCCGGGAAGCAGCAGCAGCAGCAGCGGCGGCGGCGTATCGGGGCGTAACGGAATCGAGGTGTGTTGCCGCTATATAAAGAGGAAGAAAATAGGCCCCAAACCAAACCACCATACCCTACTACAAACCATAGGCATCGCCGGCAAGGGAGGTCGGAGGAAGAAGAAAGGGTCGTCGAGGTGTTCTTGAATTCTGAATTTCTGATCAAGTCGATCGTTCGCCGGCGACGGCAAAGGTGGTAACTGGTAGTACTATATATGACGACGTCGATGGAGAAGCCCCGGCAGGTGGTGCGGAAGTTCCTGGCGCGGCCGCAGCACGAGGGCGTCGGCGCCGTCGTTCGCCGGAGCATCGGGAGGTTTGAGCTGAGGTACTTCGATCCGTTCCTCGTCCTGGACGAGTTCTCAGTGTCTGCTCCGGCTGGGTTCCCTGACCATCCACACAGAGGTTTCGAGACCGTCACTTACATGCTCGAGGGAGCCGTGACGCACGAGGACTTCGAGGGCCACCGTGGCACGATCAAGGCCGGCGACGTGCAGTGGATGACGGCCGGACGCGGCATCGTGCACTCGGAGATGCCGGCGGGGCCCGGCACCTCCAGGGGCCTCCAGCTCTGGGTCAACCTCTCCTCCCACAACAAGATGATCGAGCCGGGGTACCAGGAGATACAGAGCAAGGACATCGCGAGCACGACGTCGGACGGCGTGACGGTGCGGGTGATCGCCGGGCAGTCGATGGGCGCCCGGTCGCCGGTGCGCACGCGGACGCCGACCATGTACCTGGACTTCACGGTCCGCCCCCACGCGGCGGCGCGGCAGCCGGTGTGCGCGACGTGGAACGCGTTCGCGTACGTGCTGGAGGGGGAGGGCGTGTTCGGCGGCGGCGGCGGCGACAAGGCCGGGGCGCACCACCTGCTGCTGCTCGGCCAGGGCGACGGCGTCGAGGTGTGGAACAGGTCGGACAAGCCGCTCCGGTTCCTGCTCATCGCCGGCGAGCCCATCGGCGAGCCCGTGGCGCAGCTGGGGCCCTTCGTCATGAACACCGAGGAGGAGATCGACATGACCATCAACGACTTCGAGTTCAGCATCAATGGCTTCGAGAAGGCCAAGCACTGGAAGTCTCAGGCGCTGGTGGCGCTGGGCTTAGAGTAGTAGGGTGCAACCATGGGACGACACGACATGTCGACATATGCTCTGAACGAAGGGAAAAAAAATGGAATAGTTCTTTCTCTCATGATACGAGGTTGTTTTATTTATTTGTTTTTTTTCTCTTCCAAACAAATAGCGATCACTTTGTGTACATATCCGGCATAAGGTTGCTGCTTGCTTTTCAATTAGGCAGGTGCTTCAAATCTTCGGCCCAATGACTAAAAATCATGTACTTACTCCACAAGTTCATAAACAAGTCCTTTTGGACTTTCACTGTGTCTAATGCAAGATTTGTTTTT]
[+] EMBL AK071962             [      ACCATCTGTCGCTTTTGACCCCGGGAAGCAGCAGCAGCAGCAGCGGCGGCGGCGTATCGGGGCGTAACGGAATCGAGGTGTGTTGCCGCTATATAAAGAGGAAGAAAATAGGCCCCAAACCAAACCACCATACCCTACTACAAACCATAGGCATCGCCGGCAAGGGAGGTCGGAGGAAGAAGAAAGGGTCGTCGTGGTGTTCTTGAATTCTGAATTTCTGATCAAGTCGATCGTTCGCCGGCGACGGCAAAGGTGGTAACTGGTAGTACTATATATGACGACGTCGATGGAGAAGCCCCGGCAGGTGGTGCGGAAGTTCCTGGCGCGGCCGCAGCACGAGGGCGTCGGCGCCGTCGTTCGCCGGAGCATCGGGAGGTTTGAGCTGAGGTACTTCGATCCGTTCCTCGTCCTGGACGAGTTCTCAGTGTCTGCTCCGGCTGGGTTCCCTGACCATCCACACAGAGGTTTCGAGACCGTCACTTACATGCTCGAGGGAGCCGTGACGCACGAGGACTTCGAGGGCCACCGTGGCACGATCAAGGCCAGCGACGTGCAGTGGATGACGGCCGGACGCGGCATCGTGCACTCGGAGATGCCGGCGGGGCCCGGCACCTCCAGGGGCCTCCAGCTCTGGGTCAACCTCTCCTCCCACAACAAGATGATCGAGCCGGGGTACCAGGCGATACAGAGCAAGGACATCGCGAGCACGACGTCGGACGGCGTGACGGTGCGGGTGATCGCCGGGCAGTCGATGGGCGCCCGGTCGCCGGTGCGCACGCGGACGCCGACCATGTACCTGGACTTCACGGTCCGCCCCCACGCGGCGGCGCGGCAGCCGGTGTGCGCGACGTGGAACGCGTTCGCGTACGTGCTGGAGGGGGAGGGCGTGTT   CGGCGGCGGCGGCGACAAGGCCGGGGCGCACCACCTGCTGCTGCTCGGCCAGGGCGACGGCGTCGAGGTGTGGAACAGGTCGGACAAGCCGCTCCGGTTCCTGCTCATCGCCGGCGAGCCCATCGGCGAGCCCGTGGCGCAGCTGGGGCCCTTCGTCATGAACACCGAGGAGGAGATCGACATGACCATCAACGACTTCGAGTTCAGCATCAATGGCTTCGAGAAGGCCAAGCACTGGAAGTCTCAGGCGCTGGTGGCGCTGGGCTTAGAGTAGTAGGGTGCAACCATGGGACGACACGACATGTCGACATATGCTCTGAACGAAGGGAAAAAAAATGGAATAGTTCTTTCTCTCATGATACGAGGTTGTTTTATTTATTTGTTTTTTTTCTCTTCCAAACAAATAGCGATCACTTTGTGTACATATCCGGCATAAGGTTGCTGCTTGCTTTTCAATTAGG                                                                                                             ]
[-] EMBL AU181060             [                   TTTGACCCCGGGAAGCAGCAGCAGCAGCAGCGGCGGCGGCGTATCGGGGCGTAACGGAATCGAGGTGTGTTGCCGCTATATAAAGAGGAAGAAAATAGGCCCCAAACCAAACCACCATACCCTACTACAAACCATAGGCATCGCCGGCAAGGGAGGTCGGAGGAAGAAGAAAGGGTCGTCGAGGTGTTCTTGAATTCTGAATTTCTGATCAAGTCGATCGTTCGCCGGCGACGGCAAAGGTGGTAACTGGTAGTACTATATATGACGACGTCGATGGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_5781#0 CAAGAAACCATCTGTCGCTTTTGACCCCGGGAAGCAGCAGCAGCAGCAGCGGCGGCGGCG TATCGGGGCGTAACGGAATCGAGGTGTGTTGCCGCTATATAAAGAGGAAGAAAATAGGCC CCAAACCAAACCACCATACCCTACTACAAACCATAGGCATCGCCGGCAAGGGAGGTCGGA GGAAGAAGAAAGGGTCGTCGAGGTGTTCTTGAATTCTGAATTTCTGATCAAGTCGATCGT TCGCCGGCGACGGCAAAGGTGGTAACTGGTAGTACTATATATGACGACGTCGATGGAGAA GCCCCGGCAGGTGGTGCGGAAGTTCCTGGCGCGGCCGCAGCACGAGGGCGTCGGCGCCGT CGTTCGCCGGAGCATCGGGAGGTTTGAGCTGAGGTACTTCGATCCGTTCCTCGTCCTGGA CGAGTTCTCAGTGTCTGCTCCGGCTGGGTTCCCTGACCATCCACACAGAGGTTTCGAGAC CGTCACTTACATGCTCGAGGGAGCCGTGACGCACGAGGACTTCGAGGGCCACCGTGGCAC GATCAAGGCCGGCGACGTGCAGTGGATGACGGCCGGACGCGGCATCGTGCACTCGGAGAT GCCGGCGGGGCCCGGCACCTCCAGGGGCCTCCAGCTCTGGGTCAACCTCTCCTCCCACAA CAAGATGATCGAGCCGGGGTACCAGGAGATACAGAGCAAGGACATCGCGAGCACGACGTC GGACGGCGTGACGGTGCGGGTGATCGCCGGGCAGTCGATGGGCGCCCGGTCGCCGGTGCG CACGCGGACGCCGACCATGTACCTGGACTTCACGGTCCGCCCCCACGCGGCGGCGCGGCA GCCGGTGTGCGCGACGTGGAACGCGTTCGCGTACGTGCTGGAGGGGGAGGGCGTGTTCGG CGGCGGCGGCGGCGACAAGGCCGGGGCGCACCACCTGCTGCTGCTCGGCCAGGGCGACGG CGTCGAGGTGTGGAACAGGTCGGACAAGCCGCTCCGGTTCCTGCTCATCGCCGGCGAGCC CATCGGCGAGCCCGTGGCGCAGCTGGGGCCCTTCGTCATGAACACCGAGGAGGAGATCGA CATGACCATCAACGACTTCGAGTTCAGCATCAATGGCTTCGAGAAGGCCAAGCACTGGAA GTCTCAGGCGCTGGTGGCGCTGGGCTTAGAGTAGTAGGGTGCAACCATGGGACGACACGA CATGTCGACATATGCTCTGAACGAAGGGAAAAAAAATGGAATAGTTCTTTCTCTCATGAT ACGAGGTTGTTTTATTTATTTGTTTTTTTTCTCTTCCAAACAAATAGCGATCACTTTGTG TACATATCCGGCATAAGGTTGCTGCTTGCTTTTCAATTAGGCAGGTGCTTCAAATCTTCG GCCCAATGACTAAAAATCATGTACTTACTCCACAAGTTCATAAACAAGTCCTTTTGGACT TTCACTGTGTCTAATGCAAGATTTGTTTTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)