cluster # 5783

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Oryza sativa
cluster # 5783 cluster # 5783 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5783#0 length = 483 sequences # 2

consensus_5783#1 length = 295 sequences # 1

consensusID : consensus_5783#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 483
fasta sequence

                              [CCTCACTCTCTTTCTTTCCTTAACTCTCTTTCTCTCCTCTCCACTCCTCCTAGGGCGGCGGTGGCAGGAGCTGGCAGCGGCGACGGCTAGGGTTTCTTTTTTTGAATTCTTTTTGGAATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCGTCGTCCGCGTCGT-CTGTGGTGGTG-GCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAGAGAGGAAGGGCGGCGAGATGGCGGGGGCGAGGTCGCGAGGAGCCGACTAGCCGAGGACAGCGGCCAGTAGTGGTGCGCTCGACCCCTGGATGCGCCGCTCCGCCGCCGCCTCTCTCTCTCTCTCTCTCCTCTCTAAGGTTAGCCAGTTAGGGACTTGGGTTGGGCTGGGAACTTGGGGAGGAATTATGGACTATTTGGATGGATCTTTTTAATTTCAGAAATTCCGACAAACTTTCCGGAAAAAAAA]

[+] EMBL AK108013             [CCTCACTCTCTTTCTTTCCTTAACTCTCTTTCTCTCCTCTCCACTCCTCCTAGGGCGGCGGTGGCAGGAGCTGGCAGCGGCGACGGCTAGGGTTTCTTTTTTTGAATTCTTTTTGGAATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCGTCGTCCGCGTCGT CTGTGGTGGTG GCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAGAGAGGAAGGGCGGCGAGATGGCGGGGGCGAGGTCGCGAGGAGCCGACTAGCCGAGGACAGCGGCCAGTAGTGGTGCGCTCGACCCCTGGATGCGCCGCTCCGCCGCCGCCTCTCTCTCTCTCTCTCTCCTCTCTAAGGTTAGCCAGTTAGGGACTTGGGTTGGGCTGGGAACTTGGGGAGGAATTATGGACTATTTGGATGGATCTTTTTAATTTCAGAAATTCCGACA                  ]
[+] EMBL AU093728             [                                                                                                                                                                                  TCCGCGTCGTNCTGTGGTGGTGCGCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAGAGAGGAAGGGCGGCGAGATGGCGGGGGCGAGGTCGCGAGGAGCCGACTAGCCGAGGACAGCGGCCAGTAGTGGTGCGCTCGACCCCTGGATGCGCCCNTCCGCCGCCGCCTCTCTCTCTCTCTCTCTCCTCTCTAAGGTTAGCCAGTTAGGGACTTGGGTTGGGCTGGGAACTTGGGGAGGAATTATGGACTATTTGGATGGATCTTTTTAATTTCAGAAATTCCGACAAACTTTCCGGAAAAAAAA]




>consensus_5783#0
CCTCACTCTCTTTCTTTCCTTAACTCTCTTTCTCTCCTCTCCACTCCTCCTAGGGCGGCG
GTGGCAGGAGCTGGCAGCGGCGACGGCTAGGGTTTCTTTTTTTGAATTCTTTTTGGAATT
TTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCGTCGTC
CGCGTCGTCTGTGGTGGTGGCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAGAGAG
GAAGGGCGGCGAGATGGCGGGGGCGAGGTCGCGAGGAGCCGACTAGCCGAGGACAGCGGC
CAGTAGTGGTGCGCTCGACCCCTGGATGCGCCGCTCCGCCGCCGCCTCTCTCTCTCTCTC
TCTCCTCTCTAAGGTTAGCCAGTTAGGGACTTGGGTTGGGCTGGGAACTTGGGGAGGAAT
TATGGACTATTTGGATGGATCTTTTTAATTTCAGAAATTCCGACAAACTTTCCGGAAAAA
AAA

consensusID : consensus_5783#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [AGGCGGGGGCAGGTGGCGGCGAGAGCGGCCGGCNAGCTCGGGCNACGGCTAGGGTTTCTTTTTTTAAATTCTTTTTGGAATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCNTCGTCCGCTTCGTCTNTGGTGGTGGCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAGAGAGGAAGGGCGGCGAGATGGCGGGGGCNAGGTCGCNAGGAGCCGACTAGCCNAGGACAGCGGCCAGTAGTGGTGCGCTCNACCCCTTGGATGCGNC]

[+] EMBL C71668               [AGGCGGGGGCAGGTGGCGGCGAGAGCGGCCGGCNAGCTCGGGCNACGGCTAGGGTTTCTTTTTTTAAATTCTTTTTGGAATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCNTCGTCCGCTTCGTCTNTGGTGGTGGCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAGAGAGGAAGGGCGGCGAGATGGCGGGGGCNAGGTCGCNAGGAGCCGACTAGCCNAGGACAGCGGCCAGTAGTGGTGCGCTCNACCCCTTGGATGCGNC]




>consensus_5783#1
AGGCGGGGGCAGGTGGCGGCGAGAGCGGCCGGCNAGCTCGGGCNACGGCTAGGGTTTCTT
TTTTTAAATTCTTTTTGGAATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGT
GTGGCCAGTGGCCGGCNTCGTCCGCTTCGTCTNTGGTGGTGGCGGCGGCGAAAATGGTGG
GGGCGAGGACGGAGCGAGAGAGGAAGGGCGGCGAGATGGCGGGGGCNAGGTCGCNAGGAG
CCGACTAGCCNAGGACAGCGGCCAGTAGTGGTGCGCTCNACCCCTTGGATGCGNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5783#0      CCTCACTCTCTTTCTTTCCTTAACTCTCTTTCTCTCCTCTCCACTCCTCCTAGGGCGGCG 60
consensus_5783#1      ------------------------------------------AGGCGGGGGCAGGTGGCG 18
                                                                *  *       ** ****

consensus_5783#0      GTGGCAGGAGCTGGCAGC----GGCGACGGCTAGGGTTTCTTTTTTTGAATTCTTTTTGG 116
consensus_5783#1      GCGAGAGCGGCCGGCNAGCTCGGGCNACGGCTAGGGTTTCTTTTTTTAAATTCTTTTTGG 78
                      * *  **  ** ***       *** ********************* ************

consensus_5783#0      AATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCGT 176
consensus_5783#1      AATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCNT 138
                      ********************************************************** *

consensus_5783#0      CGTCCGCGTCGTCTGTGGTGGTGGCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAG 236
consensus_5783#1      CGTCCGCTTCGTCTNTGGTGGTGGCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAG 198
                      ******* ****** *********************************************

consensus_5783#0      AGAGGAAGGGCGGCGAGATGGCGGGGGCGAGGTCGCGAGGAGCCGACTAGCCGAGGACAG 296
consensus_5783#1      AGAGGAAGGGCGGCGAGATGGCGGGGGCNAGGTCGCNAGGAGCCGACTAGCCNAGGACAG 258
                      **************************** ******* *************** *******

consensus_5783#0      CGGCCAGTAGTGGTGCGCTCGACCCCT-GGATGCGCCGCTCCGCCGCCGCCTCTCTCTCT 355
consensus_5783#1      CGGCCAGTAGTGGTGCGCTCNACCCCTTGGATGCGNC----------------------- 295
                      ******************** ****** ******* *                       

consensus_5783#0      CTCTCTCTCCTCTCTAAGGTTAGCCAGTTAGGGACTTGGGTTGGGCTGGGAACTTGGGGA 415
consensus_5783#1      ------------------------------------------------------------
                                                                                  

consensus_5783#0      GGAATTATGGACTATTTGGATGGATCTTTTTAATTTCAGAAATTCCGACAAACTTTCCGG 475
consensus_5783#1      ------------------------------------------------------------
                                                                                  

consensus_5783#0      AAAAAAAA 483
consensus_5783#1      --------