These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2419 fasta sequence [CCATTGCTGGGAAGTGAAGAAGATGAAGGAGAGGGAGAAGGTGGTGCGACTGGCCAAGCTCGCCGAGCAGGCGGAGAGATACGACGATATGGTGGAATTTATGAAGACACTTGCTAGGATGGATGTGGATATGAGTGCTGAAGAGAGGCTTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGACCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCATTGCCTTCCATTGGCCAATTCGGGTGAAAATGTCGTGTTCTTTTATAAGATGTATGTGCAGGTTCATCAAGTCAATTATTTGCTTCTCAATTGTGTTTTACTTCATATCGGTCTATTTCCTAATGGTTACATTCAGAATTTATTCCCAAACAAACATCTTATTATTATCCAGGCATATTTTGATGATGCAATCTTTTTCTTTGTAGAAGAATACACAACTTTGAGCTCATGTAGTGTTTTGAATAGCATTGACATAACACATCCATATGAGTTTCTGACTTTCTGCTAAATTCTCTTCCTAAGAAATGCTTGACTGAACACCTTGGTCCAAAGAATTGCAGAAGGTGACAAACATGTTGACTTTGCTCTGCTTTAAACTTTGACATCAACCAGGTTTTACCAAATGATGCTAAGGTTTCATAGAATCAAAGATTTAAACATACCAGCCATGACTCATGTGTCATTCCTCCAGGGACTAACTATGCTGACCTTTTTTGCTCACAGTATCCAAAAACTTATAGGTAACCTCATGACATATAGTTTTGCTCACATGGTCCTAAAGTTTCAGAATAAAGACTAAATTATCATAATTTAAAGGGCAGTATGATACATATATATACTGATAAATAAAGGGAAGGCTTCTAAATAAGCAAGGAGTTGAAGAGCTGATCTGTGCCAGCACATTAGCTTAACTTGTTTATTTATCTAATTCTGCACAGAAATGCAAGTACTTTTTTTTTCTTTAGTGCACGACCATTTGTAGTGTTGGGGTATTCTTCAGAAAAGGAAAGGGAAACAAGACCTAAAGATGAGATGAACCTCTTGATTCCCCAACTGTTTTCTTAGTCTTGGTCTTTAATTAAATCATGTTACACCTGGATTGTTCTACATTTTAGCCTATACCTGAGCATAGTTTCTTATGAAGCTTTGCTAAGTTGTTTTTCCATAATAATACCTTCTGGTGAAAGTTTCCATAATAATTAAAGTTTCAATAATTATTTACTAAGCTTTTGGATTACTCAATTATCTTTTCCATCATTGTTTTTCAAGTATTAACAATGAAAAAAAAAACTGAATAGTGCCTCACTAGTTCTGAAGTTTCCCCTCAGTACCTCTTGTTTCAGATATTTTGAGATTTTCTGAGATGAGATGTTATAAGATTATACTAGGATCTTATGTGTTGCCCTGGTAATCTATTTAACAATGGGCAGGTTGGTTTTCTATCAATTAACCGAGGATCTTCCCTCTATAGTATGTGCATGTTCGCACGATACTCATGTGTATATCTTTTTTCTTTAATCTGCTTTATACATCACTCTTAAAAAAATTACAGGAAGGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAAGAAGGCTGCTACTGATCAGTCCCTTATGGCCTATCAGCACGCCATGGTTGTTGCCTCCAGTGAGCTTTCTCCTGCCCATCAATTCAGGCTTGGCCTTGCGCTCAACTTTTCAGTCTTCTTGAGATAATGAACTCTCCTGAGAGAGCTAGCCAAGTGGCAAAACAAGCACTTGATGAGGCTACTGCTGAGATTAACTCTGCTGGTGTGGAGGGTTACAAGGACAGCATGCTTATGATGCAGCTCCTGAAGGAGAACCTGGCATTGTGGACATCAGAACTAACTGGAGGTGAAACATCTAAGGACGATGATGTTGTTATGGAGGGCTAACTGTCTGAAATGTTCTAAAGGCCCCAGCATGTGAGCAAAACAATCAGTAACATTGTAACAATACTGCTACTGAACTTGCGACATTTATCATGGGAGCCGTGGAAATCACCTTTATTTTTCCCTTTCTTCTGTAGTTTCTTTTTTTTGGCCCTCGCTTGGGTCTTGGTGTGACTCCCAAAGTATTTTCAGAGTTTGGATTTGATAACCATGCACCAGCTTTGGTTATATTTTGAGATCTTGGAGTGGTCACCAACCCAGCTTTAATATTAGTTTGAGAGTACTTTTTTTTTCCAATGCTTGTTAAGCATCTTTGTATACCAACGGGATGATGAACTATATATCTCTTAATGATGACGAAATAAACGTCTCTTT] [+] EMBL AK072443 [CCATTGCTGGGAAGTGAAGAAGATGAAGGAGAGGGAGAAGGTGGTGCGACTGGCCAAGCTCGCCGAGCAGGCGGAGAGATACGACGATATGGTGGAATTTATGAAGACACTTGCTAGGATGGATGTGGATATGAGTGCTGAAGAGAGGCTTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGACCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCATTGCCTTCCATTGGCCAATTCGGGTGAAAATGTCGTGTTCTTTTATAAGATGTATGTGCAGGTTCATCAAGTCAATTATTTGCTTCTCAATTGTGTTTTACTTCATATCGGTCTATTTCCTAATGGTTACATTCAGAATTTATTCCCAAACAAACATCTTATTATTATCCAGGCATATTTTGATGATGCAATCTTTTTCTTTGTAGAAGAATACACAACTTTGAGCTCATGTAGTGTTTTGAATAGCATTGACATAACACATCCATATGAGTTTCTGACTTTCTGCTAAATTCTCTTCCTAAGAAATGCTTGACTGAACACCTTGGTCCAAAGAATTGCAGAAGGTGACAAACATGTTGACTTTGCTCTGCTTTAAACTTTGACATCAACCAGGTTTTACCAAATGATGCTAAGGTTTCATAGAATCAAAGATTTAAACATACCAGCCATGACTCATGTGTCATTCCTCCAGGGACTAACTATGCTGACCTTTTTTGCTCACAGTATCCAAAAACTTATAGGTAACCTCATGACATATAGTTTTGCTCACATGGTCCTAAAGTTTCAGAATAAAGACTAAATTATCATAATTTAAAGGGCAGTATGATACATATATATACTGATAAATAAAGGGAAGGCTTCTAAATAAGCAAGGAGTTGAAGAGCTGATCTGTGCCAGCACATTAGCTTAACTTGTTTATTTATCTAATTCTGCACAGAAATGCAAGTACTTTTTTTTTCTTTAGTGCACGACCATTTGTAGTGTTGGGGTATTCTTCAGAAAAGGAAAGGGAAACAAGACCTAAAGATGAGATGAACCTCTTGATTCCCCAACTGTTTTCTTAGTCTTGGTCTTTAATTAAATCATGTTACACCTGGATTGTTCTACATTTTAGCCTATACCTGAGCATAGTTTCTTATGAAGCTTTGCTAAGTTGTTTTTCCATAATAATACCTTCTGGTGAAAGTTTCCATAATAATTAAAGTTTCAATAATTATTTACTAAGCTTTTGGATTACTCAATTATCTTTTCCATCATTGTTTTTCAAGTATTAACAATGAAAAAAAAAACTGAATAGTGCCTCACTAGTTCTGAAGTTTCCCCTCAGTACCTCTTGTTTCAGATATTTTGAGATTTTCTGAGATGAGATGTTATAAGATTATACTAGGATCTTATGTGTTGCCCTGGTAATCTATTTAACAATGGGCAGGTTGGTTTTCTATCAATTAACCGAGGATCTTCCCTCTATAGTATGTGCATGTTCGCACGATACTCATGTGTATATCTTTTTTCTTTAATCTGCTTTATACATCACTCTTAAAAAAATTACAGGAAGGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAAGAAGGCTGCTACTGATCAGTCCCTTATGGCCTATCAGCACGCCATGGTTGTTGCCTCCAGTGAGCTTTCTCCTGCCCATCAATTCAGGCTTGGCCTTGCGCTCAACTTTTCAGTCTTCTTGAGATAATGAACTCTCCTGAGAGAGCTAGCCAAGTGGCAAAACAAGCACTTGATGAGGCTACTGCTGAGATTAACTCTGCTGGTGTGGAGGGTTACAAGGACAGCATGCTTATGATGCAGCTCCTGAAGGAGAACCTGGCATTGTGGACATCAGAACTAACTGGAGGTGAAACATCTAAGGACGATGATGTTGTTATGGAGGGCTAACTGTCTGAAATGTTCTAAAGGCCCCAGCATGTGAGCAAAACAATCAGTAACATTGTAACAATACTGCTACTGAACTTGCGACATTTATCATGGGAGCCGTGGAAATCACCTTTATTTTTCCCTTTCTTCTGTAGTTTCTTTTTTTTGGCCCTCGCTTGGGTCTTGGTGTGACTCCCAAAGTATTTTCAGAGTTTGGATTTGATAACCATGCACCAGCTTTGGTTATATTTTGAGATCTTGGAGTGGTCACCAACCCAGCTTTAATATTAGTTTGAGAGTACTTTTTTTTTCCAATGCTTGTTAAGCATCTTTGTATACCAACGGGATGATGAACTATATATCTCTTAATGATGACGAAATAAACGTCTCTTT] consensusID : consensus_579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [GTGTAACAATAAAGGGGTCCACAAAAAANTTTGGGGGTGAACTAAGGCCAGTTCCAATGAGGTTTTTTAATTATTGCTATTCAAAAAAATTGTTATTTCAGGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCCCTTGAGCAGAAGGTGACAGGTGGTGAGCAACCAGGTGTAACAATAAAGGGCTACAAAAAGAAAGTAGGGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAATTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTTCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGAGCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAATTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGAGCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAAAAAAAAAA] [-] EMBL CA759537 [GTGTAACAATAAAGGGGTCCACAAAAAANTTTGGGGGTGAACTAAGGCCAGTTCCAATGAGGTTTTTTAATTATTGCTATTCAAAAAAATTGTTATTTCAGGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCCCTTGAGCAGAAGGTGACAGGTGGTGAGCAACCAGGTGTAACAATAAAGGGCTACAAAAAGAAAGTAGGGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAATTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTTCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGAGCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAATTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGAGCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_579#0 CCATTGCTGGGAAGTGAAGAAGATGAAGGAGAGGGAGAAGGTGGTGCGACTGGCCAAGCT 60 consensus_579#1 ---------------------------------------------------------GTG 3 * consensus_579#0 CGCCGAGCAGGCGGAGAGATACGACGATATGGTGGAATTTATGAAGACACTTGCTAGGAT 120 consensus_579#1 TAAC-AATAAAGGGGTCCACAAAAAANTTTGGGGGTGAAC-TAAGGCCAGTTCCAATGAG 61 * * * ** * * * * *** ** * * * ** ** * * ** consensus_579#0 GGATGTGGATATGAGTGCTGAAGAGAGGCTTTTATTTTCAGTTGGTTTTAAGAAAACTAT 180 consensus_579#1 GTTTTTTAATTATTGCTATTCAAAAAAATTGTTATTTCAGGTTGGTTTTAAGAAAACTAT 121 * * * ** * * * * * * ****** ******************** consensus_579#0 TGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGG 240 consensus_579#1 TGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCCCTTGAGCAGAAGGTGACAGGTGG 181 ************************************ ******************* *** consensus_579#0 TGACCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGC 300 consensus_579#1 TGAGCAACCAGGTGTAACAATAAAGGGCTACAAAAAGAAAGTAGGGGATGAACTAAGGGC 241 *** ******************** ******************* *************** consensus_579#0 AGTTTGCAATGAAGTATTATCAATTATTGCTATTCATTGCC--TTCCATTGGCCAATTCG 358 consensus_579#1 AGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAATTTTATTT-TCAGTTGG 300 ************************************ ** *** ** ** * consensus_579#0 GGTGAAAATGTCGTGTTCTTTTATAAGATGTATGTGCAGGTTCATCAAGTCAATTATTTG 418 consensus_579#1 TTTTAAGAAAACTATTGGTTCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCA 360 * ** * * * ** * *** ** ** ** * * *** ** consensus_579#0 CTTCTCAATTGTGTTTTACTTCATATCGGTCTATTTCCTAATGGTTACATTCAGAATTTA 478 consensus_579#1 GAAGGTGACAGCTGGTGA--GCAACCAGGTGTAACAATAAATGGCTACAAAAAGAA---- 414 * * * * ** *** ** ***** **** **** consensus_579#0 TTCCCAAACAAACATCTTATTATTATCCAGGCATATTTTGATGATGCAATCTTTTTCTTT 538 consensus_579#1 ------AGTAGAGGATGAACTAA-----GGGCAGTTTGCAATGAAGTATTATCAATTATT 463 * * * * ** **** ** **** * * * * * ** consensus_579#0 GTAGAAGAATACACAACTTTGAGCTCATGTAGTGTTTTGAATAGCATTGACATAACACAT 598 consensus_579#1 GCTATTCAAAAAA-AATTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGA 522 * ** * * ** *** *** * ** ** *** * **** * consensus_579#0 CCAT-ATGAGTTTCTGACTTTCTGCTAAATTCTCTTCCTAAGAAATGCTTGACTGAACAC 657 consensus_579#1 GCATCATGGA-----GAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGG-TGAGCAA 576 *** *** ** * ** * * * * * ** *** ** consensus_579#0 CTTGGTCCAAAGAATTGCAGAAGGTGACAAACATGTTGACTTTGCTCTGCTTTAAACTTT 717 consensus_579#1 CCAGGTGTAACAA----TAAATGGCTACAAAAAGA--AAGTAGAGGATGAACTAAGGGCA 630 * *** ** * * * ** ***** * * * ** *** consensus_579#0 GACATCAACCAGGTTTTACCAAATGATGCTAAGGTTTCATAGAATCAAAGATTTAAACAT 777 consensus_579#1 GTTTGCAATGAAGTATTATCAATTATTGCTA----TTCAAAAAAAAAAAAA---AAA--- 680 * *** * ** *** *** * ***** **** * ** *** * *** consensus_579#0 ACCAGCCATGACTCATGTGTCATTCCTCCAGGGACTAACTATGCTGACCTTTTTTGCTCA 837 consensus_579#1 ------------------------------------------------------------ consensus_579#0 CAGTATCCAAAAACTTATAGGTAACCTCATGACATATAGTTTTGCTCACATGGTCCTAAA 897 consensus_579#1 ------------------------------------------------------------ consensus_579#0 GTTTCAGAATAAAGACTAAATTATCATAATTTAAAGGGCAGTATGATACATATATATACT 957 consensus_579#1 ------------------------------------------------------------ consensus_579#0 GATAAATAAAGGGAAGGCTTCTAAATAAGCAAGGAGTTGAAGAGCTGATCTGTGCCAGCA 1017 consensus_579#1 ------------------------------------------------------------ consensus_579#0 CATTAGCTTAACTTGTTTATTTATCTAATTCTGCACAGAAATGCAAGTACTTTTTTTTTC 1077 consensus_579#1 ------------------------------------------------------------ consensus_579#0 TTTAGTGCACGACCATTTGTAGTGTTGGGGTATTCTTCAGAAAAGGAAAGGGAAACAAGA 1137 consensus_579#1 ------------------------------------------------------------ consensus_579#0 CCTAAAGATGAGATGAACCTCTTGATTCCCCAACTGTTTTCTTAGTCTTGGTCTTTAATT 1197 consensus_579#1 ------------------------------------------------------------ consensus_579#0 AAATCATGTTACACCTGGATTGTTCTACATTTTAGCCTATACCTGAGCATAGTTTCTTAT 1257 consensus_579#1 ------------------------------------------------------------ consensus_579#0 GAAGCTTTGCTAAGTTGTTTTTCCATAATAATACCTTCTGGTGAAAGTTTCCATAATAAT 1317 consensus_579#1 ------------------------------------------------------------ consensus_579#0 TAAAGTTTCAATAATTATTTACTAAGCTTTTGGATTACTCAATTATCTTTTCCATCATTG 1377 consensus_579#1 ------------------------------------------------------------ consensus_579#0 TTTTTCAAGTATTAACAATGAAAAAAAAAACTGAATAGTGCCTCACTAGTTCTGAAGTTT 1437 consensus_579#1 ------------------------------------------------------------ consensus_579#0 CCCCTCAGTACCTCTTGTTTCAGATATTTTGAGATTTTCTGAGATGAGATGTTATAAGAT 1497 consensus_579#1 ------------------------------------------------------------ consensus_579#0 TATACTAGGATCTTATGTGTTGCCCTGGTAATCTATTTAACAATGGGCAGGTTGGTTTTC 1557 consensus_579#1 ------------------------------------------------------------ consensus_579#0 TATCAATTAACCGAGGATCTTCCCTCTATAGTATGTGCATGTTCGCACGATACTCATGTG 1617 consensus_579#1 ------------------------------------------------------------ consensus_579#0 TATATCTTTTTTCTTTAATCTGCTTTATACATCACTCTTAAAAAAATTACAGGAAGGGTG 1677 consensus_579#1 ------------------------------------------------------------ consensus_579#0 ACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAAGAAGGCTGCTACTGATC 1737 consensus_579#1 ------------------------------------------------------------ consensus_579#0 AGTCCCTTATGGCCTATCAGCACGCCATGGTTGTTGCCTCCAGTGAGCTTTCTCCTGCCC 1797 consensus_579#1 ------------------------------------------------------------ consensus_579#0 ATCAATTCAGGCTTGGCCTTGCGCTCAACTTTTCAGTCTTCTTGAGATAATGAACTCTCC 1857 consensus_579#1 ------------------------------------------------------------ consensus_579#0 TGAGAGAGCTAGCCAAGTGGCAAAACAAGCACTTGATGAGGCTACTGCTGAGATTAACTC 1917 consensus_579#1 ------------------------------------------------------------ consensus_579#0 TGCTGGTGTGGAGGGTTACAAGGACAGCATGCTTATGATGCAGCTCCTGAAGGAGAACCT 1977 consensus_579#1 ------------------------------------------------------------ consensus_579#0 GGCATTGTGGACATCAGAACTAACTGGAGGTGAAACATCTAAGGACGATGATGTTGTTAT 2037 consensus_579#1 ------------------------------------------------------------ consensus_579#0 GGAGGGCTAACTGTCTGAAATGTTCTAAAGGCCCCAGCATGTGAGCAAAACAATCAGTAA 2097 consensus_579#1 ------------------------------------------------------------ consensus_579#0 CATTGTAACAATACTGCTACTGAACTTGCGACATTTATCATGGGAGCCGTGGAAATCACC 2157 consensus_579#1 ------------------------------------------------------------ consensus_579#0 TTTATTTTTCCCTTTCTTCTGTAGTTTCTTTTTTTTGGCCCTCGCTTGGGTCTTGGTGTG 2217 consensus_579#1 ------------------------------------------------------------ consensus_579#0 ACTCCCAAAGTATTTTCAGAGTTTGGATTTGATAACCATGCACCAGCTTTGGTTATATTT 2277 consensus_579#1 ------------------------------------------------------------ consensus_579#0 TGAGATCTTGGAGTGGTCACCAACCCAGCTTTAATATTAGTTTGAGAGTACTTTTTTTTT 2337 consensus_579#1 ------------------------------------------------------------ consensus_579#0 CCAATGCTTGTTAAGCATCTTTGTATACCAACGGGATGATGAACTATATATCTCTTAATG 2397 consensus_579#1 ------------------------------------------------------------ consensus_579#0 ATGACGAAATAAACGTCTCTTT 2419 consensus_579#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||