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Oryza sativa
cluster # 5795 cluster # 5795       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5795#0 length = 937 sequences # 2  
consensus_5795#1 length = 636 sequences # 1  

consensusID : consensus_5795#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 937
fasta sequence
                              [AGAGGCTAAAAGCTAGCTAGGTGTAGATAGCTTCTTGTGATATATTGCCTCTGCTTGCCATGGCGGTAGCTCACCTTCTTATCCAACTCATCTCCATGGCTGGCAATGGTGTTGGAGCCTGCAGGGTGCAGATTATTCCGGCCATTATCTTTCTTCAGCTCCTCTTTAGAGCTCTTGGCGCGGATGGCGCGTCGTCGTTCAGCTTCACCAACAGCTGCCAGTATCCGGTGTGGGTGGGCGTGCTCCACGGCGCCAGCTCGCCGGCGCTGGCGCGCTCCGGCTTCTACCTCGCGCCGTCGGGCACGTACCACCTCGCCGCGCCGTCGTCGGGGACATGGTCCGGCACGTTCTGGGCGCGCACCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCGGACTGCGGCTCCGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCACCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGACGTCAGCCTCGTCGACGGGTTCAACGTGCCGGTGCGCCTCGCGCCGTCGTCGTCGGGCGGCGGCGGGGGCGACTGCCACGCCGTGTCGTGCGCGGGCGACGTTAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCGGCGCCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACTGCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGTTCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCACCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGCCCTCGATCTTAATTACAATGTGATTGTTGCTATATAAGTTATATGAAACTATATCATCA]

[+] EMBL AK107984             [AGAGGCTAAAAGCTAGCTAGGTGTAGATAGCTTCTTGTGATATATTGCCTCTGCTTGCCATGGCGGTAGCTCACCTTCTTATCCAACTCATCTCCATGGCTGGCAATGGTGTTGGAGCCTGCAGGGTGCAGATTATTCCGGCCATTATCTTTCTTCAGCTCCTCTTTAGAGCTCTTGGCGCGGATGGCGCGTCGTCGTTCAGCTTCACCAACAGCTGCCAGTATCCGGTGTGGGTGGGCGTGCTCCACGGCGCCAGCTCGCCGGCGCTGGCGCGCTCCGGCTTCTACCTCGCGCCGTCGGGCACGTACCACCTCGCCGCGCCGTCGTCGGGGACATGGTCCGGCACGTTCTGGGCGCGCACCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCGGACTGCGGCTCCGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCACCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGACGTCAGCCTCGTCGACGGGTTCAACGTGCCGGTGCGCCTCGCGCCGTCGTCGTCGGGCGGCGGCGGGGGCGACTGCCACGCCGTGTCGTGCGCGGGCGACGTTAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCGGCGCCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACTGCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGTTCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCACCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGCCCTCGATCTTAATTACAATGTGATTGTTGCTATATAAGTTATATGAAACTATATCATCA]
[+] EMBL OSS4969A             [                CTAGGTGTAGATAGCTTCTTGTGATATATTGCCTCTGCTTGCCATGGCGGTAG TCACCTTCTTATCCAACTCATCTCCATGGCTGGCAATGGTGTTGGAGCCTGCAGGGTGCAGATTATTCCGGCCATTATCTTTCTTCAGCTCCTCTTTAGNGCTCTNGGNGCGGATGGCGCGTCGTCGTTCAGCTTCACCAACAGCTGCCAGTATCCGGNGTGGGTGGGNGTGCTCCACGGCGCCACTTCGCCGGCGCTGGCGCGCTCCGGCTTCTACCTCGCGANGTCGGGCACGTACCACCTCGCCGCGCCGTCGTCGGGGACATGGTCCGGCACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_5795#0 AGAGGCTAAAAGCTAGCTAGGTGTAGATAGCTTCTTGTGATATATTGCCTCTGCTTGCCA TGGCGGTAGCTCACCTTCTTATCCAACTCATCTCCATGGCTGGCAATGGTGTTGGAGCCT GCAGGGTGCAGATTATTCCGGCCATTATCTTTCTTCAGCTCCTCTTTAGAGCTCTTGGCG CGGATGGCGCGTCGTCGTTCAGCTTCACCAACAGCTGCCAGTATCCGGTGTGGGTGGGCG TGCTCCACGGCGCCAGCTCGCCGGCGCTGGCGCGCTCCGGCTTCTACCTCGCGCCGTCGG GCACGTACCACCTCGCCGCGCCGTCGTCGGGGACATGGTCCGGCACGTTCTGGGCGCGCA CCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCGGACTGCGGCT CCGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCA CCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGACGTCAGCCTCGTCGACGGGT TCAACGTGCCGGTGCGCCTCGCGCCGTCGTCGTCGGGCGGCGGCGGGGGCGACTGCCACG CCGTGTCGTGCGCGGGCGACGTTAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCG GCGCCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACT GCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGT TCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCA CCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGCCCTCGATCTTAATTACAATGTG ATTGTTGCTATATAAGTTATATGAAACTATATCATCA



consensusID : consensus_5795#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence
                              [CATGGTCCGGCACGTTCTGGGCGCGCACCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCCGACTGCGGCTCGGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCACCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGATGTCAGCCTCGTCGACGGGTTCAACGTGCCGGTGCGCCTCGCGCCGTCGTCCTCGGGCGGCGGCGGCGACTGCCACGCCGTGTCGTGCGCGGGCGACGTGAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCGGCGGCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACTGCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGTTCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCACCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGTCCTCTCTCCTAGTTACAATGTGATTGCTGCTAATTATAAGTTACTCCCTCTCTCTCAAAATAAGCGTAGCTATGACTGTTATGTATCCAACTTT]

[+] EMBL BF430860             [CATGGTCCGGCACGTTCTGGGCGCGCACCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCCGACTGCGGCTCGGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCACCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGATGTCAGCCTCGTCGACGGGTTCAACGTGCCGGTGCGCCTCGCGCCGTCGTCCTCGGGCGGCGGCGGCGACTGCCACGCCGTGTCGTGCGCGGGCGACGTGAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCGGCGGCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACTGCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGTTCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCACCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGTCCTCTCTCCTAGTTACAATGTGATTGCTGCTAATTATAAGTTACTCCCTCTCTCTCAAAATAAGCGTAGCTATGACTGTTATGTATCCAACTTT]


>consensus_5795#1 CATGGTCCGGCACGTTCTGGGCGCGCACCGGCTGCGCCGTCGACTCCTCCACCGGCCGCT TCACCTGCGCCACCGCCGACTGCGGCTCGGGCGACGTCGCCTGCAACGGCCGCGGCCCGT CGCCGCCGGTCACGCTCGCCGAGATCACCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACT TCTACGATGTCAGCCTCGTCGACGGGTTCAACGTGCCGGTGCGCCTCGCGCCGTCGTCCT CGGGCGGCGGCGGCGACTGCCACGCCGTGTCGTGCGCGGGCGACGTGAACGCCGCGTGCC CCTCCGACCTCCGCGTCGTGTCCGGCGGCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCG ACGCGTACCGGAGCGCGCGCTACTGCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCG GGCCCACCGACTACTCGCAGGTGTTCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCT ACGATGACGCCAGCAGCACGTTCACCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCT GTCCTCTCTCCTAGTTACAATGTGATTGCTGCTAATTATAAGTTACTCCCTCTCTCTCAA AATAAGCGTAGCTATGACTGTTATGTATCCAACTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5795#0      AGAGGCTAAAAGCTAGCTAGGTGTAGATAGCTTCTTGTGATATATTGCCTCTGCTTGCCA 60
consensus_5795#1      ------------------------------------------------------------
                                                                                  

consensus_5795#0      TGGCGGTAGCTCACCTTCTTATCCAACTCATCTCCATGGCTGGCAATGGTGTTGGAGCCT 120
consensus_5795#1      ------------------------------------------------------------
                                                                                  

consensus_5795#0      GCAGGGTGCAGATTATTCCGGCCATTATCTTTCTTCAGCTCCTCTTTAGAGCTCTTGGCG 180
consensus_5795#1      ------------------------------------------------------------
                                                                                  

consensus_5795#0      CGGATGGCGCGTCGTCGTTCAGCTTCACCAACAGCTGCCAGTATCCGGTGTGGGTGGGCG 240
consensus_5795#1      ------------------------------------------------------------
                                                                                  

consensus_5795#0      TGCTCCACGGCGCCAGCTCGCCGGCGCTGGCGCGCTCCGGCTTCTACCTCGCGCCGTCGG 300
consensus_5795#1      ------------------------------------------------------------
                                                                                  

consensus_5795#0      GCACGTACCACCTCGCCGCGCCGTCGTCGGGGACATGGTCCGGCACGTTCTGGGCGCGCA 360
consensus_5795#1      ---------------------------------CATGGTCCGGCACGTTCTGGGCGCGCA 27
                                                       ***************************

consensus_5795#0      CCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCGGACTGCGGCT 420
consensus_5795#1      CCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCCGACTGCGGCT 87
                      ************************************************* **********

consensus_5795#0      CCGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCA 480
consensus_5795#1      CGGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCA 147
                      * **********************************************************

consensus_5795#0      CCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGACGTCAGCCTCGTCGACGGGT 540
consensus_5795#1      CCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGATGTCAGCCTCGTCGACGGGT 207
                      **************************************** *******************

consensus_5795#0      TCAACGTGCCGGTGCGCCTCGCGCCGTCGTCGTCGGGCGGCGGCGGGGGCGACTGCCACG 600
consensus_5795#1      TCAACGTGCCGGTGCGCCTCGCGCCGTCGTCCTCGGGCGGCGGCG---GCGACTGCCACG 264
                      ******************************* *************   ************

consensus_5795#0      CCGTGTCGTGCGCGGGCGACGTTAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCG 660
consensus_5795#1      CCGTGTCGTGCGCGGGCGACGTGAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCG 324
                      ********************** *************************************

consensus_5795#0      GCGCCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACT 720
consensus_5795#1      GCGGCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACT 384
                      *** ********************************************************

consensus_5795#0      GCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGT 780
consensus_5795#1      GCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGT 444
                      ************************************************************

consensus_5795#0      TCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCA 840
consensus_5795#1      TCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCA 504
                      ************************************************************

consensus_5795#0      CCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGCCCTCGATCTTAATTACAATGTG 900
consensus_5795#1      CCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGTCCTCTCTCCTAGTTACAATGTG 564
                      ************************************* ****  ** ** **********

consensus_5795#0      ATTGTTGCTA--TATAAGTTATATGAAACTATATCATCA--------------------- 937
consensus_5795#1      ATTGCTGCTAATTATAAGTTAC-TCCCTCTCTCTCAAAATAAGCGTAGCTATGACTGTTA 623
                      **** *****  *********  *    ** * ***  *                     

consensus_5795#0      -------------
consensus_5795#1      TGTATCCAACTTT 636
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)