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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 895 fasta sequence
[CTCGAAGATTTCCTCATCAATGAGTGCATGTACTCGGGTATTGTCAGGGGCAAATTGGATCAGCTGCGGAGGTGTTTTGAGGTACAATTTGCAACTGGAAGGGATCTTACACCTGATCAGCTGAACAATATGATAGATACATTATCTGACTGGCTGGGAACATCGGATAATTTATTGCATCAGATTCAGGAGAAAATTAAGTGGGCTGATACAATGAGTGAAGTGAACAAGAAGCACCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAGTTGAACAATTTAAGCAGGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGAATAATGGATTTTGAAGAGGACCGCATCCGACCAAAAAGGAGGCGACAACCAATGGCATAGTTTCAATGGCATACTTACCTGCCTCCCCACTTGTGGAAGTGCTGACGCCCTACCTTGAGACATTTTGGCACCAGAGCTGAGGAAACTTCCCCACATCAATTTATTTATGGTGCTTCCTTTTGAAGCGAGTATCCGTTATCATTGTCTCTTCTGGAGAAAATATTCGTTTTGGTACGAGATGTACAAGGTTGACACTTACCGTAGCATTTGTTTGCTGGTAAAAAAAAATACAGGTGGCTGGCTTAGCGTTGTAAAGATCATGGTTCTGAAAGTATTTTTTGGTGACTTAAAGTTCGCTCTGTTTGCATTTTGGCTGTGTTTGTAGCTGTGATTCATCAGCCACGCTCATCAAGTTGAAACTTGAAAGCTATCAACTTACGAAATTATTTTATAGGAATTAGTTCATATCCTACGGTCATCTGGAAGAACTGCCGTATTGTAAAGGAGCCCTAAATTGTTTTGGGTCGTACTTAGCAAATGAT]
[+] EMBL AK058214 [CTCGAAGATTTCCTCATCAATGAGTGCATGTACTCGGGTATTGTCAGGGGCAAATTGGATCAGCTGCGGAGGTGTTTTGAGGTACAATTTGCAACTGGAAGGGATCTTACACCTGATCAGCTGAACAATATGATAGATACATTATCTGACTGGCTGGGAACATCGGATAATTTATTGCATCAGATTCAGGAGAAAATTAAGTGGGCTGATACAATGAGTGAAGTGAACAAGAAGCACCAGAAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAGTTGAACAATTTAAGCAGGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGAATAATGGATTTTGAAGAGGACCGCATCCGACCAAAAAGGAGGCGACAACCAATGGCATAGTTTCAATGGCATACTTACCTGCCTCCCCACTTGTGGAAGTGCTGACGCCCTACCTTGAGACATTTTGGCACCAGAGCTGAGGAAACTTCCCCACATCAATTTATTTATGGTGCTTCCTTTTGAAGCGAGTATCCGTTATCATTGTCTCTTCTGGAGAAAATATTCGTTTTGGTACGAGATGTACAAGGTTGACACTTACCGTAGCATTTGTTTGCTGGTAAAAAAAAATACAGGTGGCTGGCTTAGCGTTGTAAAGATCATGGTTCTGAAAGTATTTT ]
[-] EMBL AU225583 [ ccgctTACAGGTGGCTGGCTTAGCGTTGTAAAGATCATGGTTCTGAAAGTATTTTTTGGTGACTTAAAGTTCGCTCTGTTTGCATTTTGGCTGTGTTTGTAGCTGTGATTCATCAGCCACGCTCATCAAGTTGAAACTTGAAAGCTATCAACTTACGAAATTATTTTATAGGAATTAGTTCATATCCTACGGTCATCTGGAAGAACTGCCGTATTGTAAAGGAGCCCTAAATTGTTTTGGGTCGTACTTAGCAAATGAT]
consensusID : consensus_5801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence
[CTTGAGACANTTTGGCACCAGANCTGAGGAAACTTCCCCANTTCAATTTANTTATGGTGCTTCCTTTTGAANCGAGTATCCGTTANCATTGTCNCTTCTGGAGAAAATANTCGTTTTGGTACGANATGTACAAGGTTGACACTTACCGTAGCATTTGTTTGCTGGTTAAAAAAAATACAGGTGGCTGGCTTANCGTTGTAAAGATCATGGNTCTGAAAGTATTTTTTGGTGACTTAAAGTTCAAAAAAAAAAAAAA]
[+] EMBL AU181123 [CTTGAGACANTTTGGCACCAGANCTGAGGAAACTTCCCCANTTCAATTTANTTATGGTGCTTCCTTTTGAANCGAGTATCCGTTANCATTGTCNCTTCTGGAGAAAATANTCGTTTTGGTACGANATGTACAAGGTTGACACTTACCGTAGCATTTGTTTGCTGGTTAAAAAAAATACAGGTGGCTGGCTTANCGTTGTAAAGATCATGGNTCTGAAAGTATTTTTTGGTGACTTAAAGTTCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5801#0 CTCGAAGATTTCCTCATCAATGAGTGCATGTACTCGGGTATTGTCAGGGGCAAATTGGAT 60
consensus_5801#1 ------------------------------------------------------------
consensus_5801#0 CAGCTGCGGAGGTGTTTTGAGGTACAATTTGCAACTGGAAGGGATCTTACACCTGATCAG 120
consensus_5801#1 ------------------------------------------------------------
consensus_5801#0 CTGAACAATATGATAGATACATTATCTGACTGGCTGGGAACATCGGATAATTTATTGCAT 180
consensus_5801#1 ------------------------------------------------------------
consensus_5801#0 CAGATTCAGGAGAAAATTAAGTGGGCTGATACAATGAGTGAAGTGAACAAGAAGCACCAG 240
consensus_5801#1 ------------------------------------------------------------
consensus_5801#0 AAAGAGTTCGAAGACAAGGTAGAAGAAGCCAAAAAATCAATCAAGTTGAACAATTTAAGC 300
consensus_5801#1 ------------------------------------------------------------
consensus_5801#0 AGGCAGACATCGACTTACGGGGGCATGACGACTTTCTCTCTGAACCTGGAGGAATAATGG 360
consensus_5801#1 ------------------------------------------------------------
consensus_5801#0 ATTTTGAAGAGGACCGCATCCGACCAAAAAGGAGGCGACAACCAATGGCATAGTTTCAAT 420
consensus_5801#1 ------------------------------------------------------------
consensus_5801#0 GGCATACTTACCTGCCTCCCCACTTGTGGAAGTGCTGACGCCCTACCTTGAGACATTTTG 480
consensus_5801#1 ----------------------------------------------CTTGAGACANTTTG 14
********* ****
consensus_5801#0 GCACCAGAGCTGAGGAAACTTCCCCACATCAATTTATTTATGGTGCTTCCTTTTGAAGCG 540
consensus_5801#1 GCACCAGANCTGAGGAAACTTCCCCANTTCAATTTANTTATGGTGCTTCCTTTTGAANCG 74
******** ***************** ******** ******************** **
consensus_5801#0 AGTATCCGTTATCATTGTCTCTTCTGGAGAAAATATTCGTTTTGGTACGAGATGTACAAG 600
consensus_5801#1 AGTATCCGTTANCATTGTCNCTTCTGGAGAAAATANTCGTTTTGGTACGANATGTACAAG 134
*********** ******* *************** ************** *********
consensus_5801#0 GTTGACACTTACCGTAGCATTTGTTTGCTGGTAAAAAAAAATACAGGTGGCTGGCTTAGC 660
consensus_5801#1 GTTGACACTTACCGTAGCATTTGTTTGCTGGTTAAAAAAAATACAGGTGGCTGGCTTANC 194
******************************** ************************* *
consensus_5801#0 GTTGTAAAGATCATGGTTCTGAAAGTATTTTTTGGTGACTTAAAGTTCGCTCTGTTTGCA 720
consensus_5801#1 GTTGTAAAGATCATGGNTCTGAAAGTATTTTTTGGTGACTTAAAGTTCAAAAAAAAAAAA 254
**************** ******************************* *
consensus_5801#0 TTTTGGCTGTGTTTGTAGCTGTGATTCATCAGCCACGCTCATCAAGTTGAAACTTGAAAG 780
consensus_5801#1 AA---------------------------------------------------------- 256
consensus_5801#0 CTATCAACTTACGAAATTATTTTATAGGAATTAGTTCATATCCTACGGTCATCTGGAAGA 840
consensus_5801#1 ------------------------------------------------------------
consensus_5801#0 ACTGCCGTATTGTAAAGGAGCCCTAAATTGTTTTGGGTCGTACTTAGCAAATGAT 895
consensus_5801#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||