cluster # 5802

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Oryza sativa
cluster # 5802 cluster # 5802 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5802#0 length = 1056 sequences # 2

consensus_5802#1 length = 549 sequences # 1

consensusID : consensus_5802#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1056
fasta sequence

                              [CCGCCGGCCTAGACCAACAGCGATGGGGAGGTCGCCGTGCTGCGAGAAGGAGCACACTAACAAGGGCGCGTGGACCAAGGAGGAGGACGAGCGCCTCGTCGCCTACATCCGCGCCCACGGCGAGGGCTGCTGGCGCTCGCTCCCCAAGGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGCCGACGAGGACGACCTCATCATCAAGCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCGCGGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCCGGAAGCTTCTCGGCAGGGGGATCGACCCCGTCACGCACCGCCCCGTCAACGCCGCCGCCGCCACCATCTCCTTCCATCCCCAGCCGCCGCCAACGACGAAGGAGGAGCAGCTCATACTCAGCAAGCCGCCCAAGTGCCCCGACCTCAACCTGGACCTCTGCATCAGCC-CGCCGTCGTGCCAGGAAGAAGACGATGACTATGAGGCGAAGCCGGCGATGATCGTGAGGGCGACAGGAGCTTGCATGCNGCCAGCACAGCAGGCAGCNCACTCATGCATTTCAGGCATGCAAGCCATCGGCACTCCAAGAAGGAGTGGCATAGTGGCAGCAGTGCAGGCAGGCAGGCAGGCAGCCAGGCAGCCAGGCAAACAAACTTTCCTCATGGCACCAGGTCNTGGGCATGCTTCGACTTCAGAAGCCTCCCCAATGAAATGAAGATGATGCCTGCAAACCAAATGCCATGGATCGTTACAACTTTCTCTGTGCTCTTTTGGGGTTCTTGATTTGCTTGAGCTGAGCTTTGGTTACTGCTTGAGTGTTAGTCCTTCTTAATTAGGATCAAGATAGAGGAATACTTCCTTTGGGGAGATGATCAGTGATCTTGTTGATCACTTCCTCCATTTTGTGTAAATACTGTTCCACTCATACTTAGTTCAGTTGATGATATGGTTATTTAGGTTGTTGGATGTAAAAAA]

[+] EMBL CB653197             [CCGCCGGCCTAGACCAACAGCGATGGGGAGGTCGCCGTGCTGCGAGAAGGAGCACACTAACAAGGGCGCGTGGACCAAGGAGGAGGACGAGCGCCTCGTCGCCTACATCCGCGCCCACGGCGAGGGCTGCTGGCGCTCGCTCCCCAAGGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGCCGACGAGGACGACCTCATCATCAAGCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCGCGGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCCGGAAGCTTCTCGGCAGGGGGATCGACCCCGTCACGCACCGCCCCGTCAACGCCGCCGCCGCCACCATCTCCTTCCATCCCCAGCCGCCGCCAACGACGAAGGAGGAGCAGCTCATACTCAGCAAGCCGCCCAAGTGCCCCGACCTCAACCTGGACCTCTGCATCAGCC CGCCGTCGTGCCAGGAAGAAGACGATGACTATGAGGCGAAGCCGGCGATGATCGTGAGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM420819             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTGGACCTCTGCATCAGCCACGCCGTCGTGCCAGGAAGAAGACGATGACTATGA GCGAAGCCGGCGATGATCGTGAGGGCGACAGGAGCTTGCATGCNGCCAGCACAGCAGGCAGCNCACTCATGCATTTCAGGCATGCAAGCCATCGGCACTCCAAGAAGGAGTGGCATAGTGGCAGCAGTGCAGGCAGGCAGGCAGGCAGCCAGGCAGCCAGGCAAACAAACTTTCCTCATGGCACCAGGTCNTGGGCATGCTTCGACTTCAGAAGCCTCCCCAATGAAATGAAGATGATGCCTGCAAACCAAATGCCATGGATCGTTACAACTTTCTCTGTGCTCTTTTGGGGTTCTTGATTTGCTTGAGCTGAGCTTTGGTTACTGCTTGAGTGTTAGTCCTTCTTAATTAGGATCAAGATAGAGGAATACTTCCTTTGGGGAGATGATCAGTGATCTTGTTGATCACTTCCTCCATTTTGTGTAAATACTGTTCCACTCATACTTAGTTCAGTTGATGATATGGTTATTTAGGTTGTTGGATGTAAAAAA]




>consensus_5802#0
CCGCCGGCCTAGACCAACAGCGATGGGGAGGTCGCCGTGCTGCGAGAAGGAGCACACTAA
CAAGGGCGCGTGGACCAAGGAGGAGGACGAGCGCCTCGTCGCCTACATCCGCGCCCACGG
CGAGGGCTGCTGGCGCTCGCTCCCCAAGGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTG
CCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGCCGA
CGAGGACGACCTCATCATCAAGCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCGC
GGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCG
CCGGAAGCTTCTCGGCAGGGGGATCGACCCCGTCACGCACCGCCCCGTCAACGCCGCCGC
CGCCACCATCTCCTTCCATCCCCAGCCGCCGCCAACGACGAAGGAGGAGCAGCTCATACT
CAGCAAGCCGCCCAAGTGCCCCGACCTCAACCTGGACCTCTGCATCAGCCCGCCGTCGTG
CCAGGAAGAAGACGATGACTATGAGGCGAAGCCGGCGATGATCGTGAGGGCGACAGGAGC
TTGCATGCNGCCAGCACAGCAGGCAGCNCACTCATGCATTTCAGGCATGCAAGCCATCGG
CACTCCAAGAAGGAGTGGCATAGTGGCAGCAGTGCAGGCAGGCAGGCAGGCAGCCAGGCA
GCCAGGCAAACAAACTTTCCTCATGGCACCAGGTCNTGGGCATGCTTCGACTTCAGAAGC
CTCCCCAATGAAATGAAGATGATGCCTGCAAACCAAATGCCATGGATCGTTACAACTTTC
TCTGTGCTCTTTTGGGGTTCTTGATTTGCTTGAGCTGAGCTTTGGTTACTGCTTGAGTGT
TAGTCCTTCTTAATTAGGATCAAGATAGAGGAATACTTCCTTTGGGGAGATGATCAGTGA
TCTTGTTGATCACTTCCTCCATTTTGTGTAAATACTGTTCCACTCATACTTAGTTCAGTT
GATGATATGGTTATTTAGGTTGTTGGATGTAAAAAA

consensusID : consensus_5802#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [CCGACCTCAAGCGCGGCAACTTCACCGCCGACGAGGACGACCTCATCATCAAGCTCCACAGCCTCCTCGGCAACAAGTAACTACGCTTCTCTTTTCTTGCCTTCTGCCTCACCTCGCCTCTCTTCCATCCATCGATTTTCATCATCTGTCAGGTGGTCTCTGATCGCGGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCCGGAAGCTTCTCGGCAGGGGGATCGACCCCGTCACGCACCGCCCCGTCAACGCCGCCGCCGCCACCATCTCCTTCCATCCCCAGCCGCCGCCAACGACGAAGGAGGAGCAGCTCATACTCAGCAAGCCGCCCAAGTGCCCCGACCTCAACCTGGACCTCTGCATCAGCCCGCCGTCGTGCCAGGAAGAAGACGATGACTATGAGGCGAAGCCGGCGATGATCGTGAGGGCGCCGGAGCTGCAGCGCCGCCGCGGCGGCCTCTGCTTCGGCTGCAGCCTCGGCCTCCAGAAGGAGTGCAAGTGCAGCGGCGGCGGCGCCGGC]

[+] EMBL CF326047             [CCGACCTCAAGCGCGGCAACTTCACCGCCGACGAGGACGACCTCATCATCAAGCTCCACAGCCTCCTCGGCAACAAGTAACTACGCTTCTCTTTTCTTGCCTTCTGCCTCACCTCGCCTCTCTTCCATCCATCGATTTTCATCATCTGTCAGGTGGTCTCTGATCGCGGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCCGGAAGCTTCTCGGCAGGGGGATCGACCCCGTCACGCACCGCCCCGTCAACGCCGCCGCCGCCACCATCTCCTTCCATCCCCAGCCGCCGCCAACGACGAAGGAGGAGCAGCTCATACTCAGCAAGCCGCCCAAGTGCCCCGACCTCAACCTGGACCTCTGCATCAGCCCGCCGTCGTGCCAGGAAGAAGACGATGACTATGAGGCGAAGCCGGCGATGATCGTGAGGGCGCCGGAGCTGCAGCGCCGCCGCGGCGGCCTCTGCTTCGGCTGCAGCCTCGGCCTCCAGAAGGAGTGCAAGTGCAGCGGCGGCGGCGCCGGC]




>consensus_5802#1
CCGACCTCAAGCGCGGCAACTTCACCGCCGACGAGGACGACCTCATCATCAAGCTCCACA
GCCTCCTCGGCAACAAGTAACTACGCTTCTCTTTTCTTGCCTTCTGCCTCACCTCGCCTC
TCTTCCATCCATCGATTTTCATCATCTGTCAGGTGGTCTCTGATCGCGGCGAGGCTGCCG
GGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCCGGAAGCTTCTC
GGCAGGGGGATCGACCCCGTCACGCACCGCCCCGTCAACGCCGCCGCCGCCACCATCTCC
TTCCATCCCCAGCCGCCGCCAACGACGAAGGAGGAGCAGCTCATACTCAGCAAGCCGCCC
AAGTGCCCCGACCTCAACCTGGACCTCTGCATCAGCCCGCCGTCGTGCCAGGAAGAAGAC
GATGACTATGAGGCGAAGCCGGCGATGATCGTGAGGGCGCCGGAGCTGCAGCGCCGCCGC
GGCGGCCTCTGCTTCGGCTGCAGCCTCGGCCTCCAGAAGGAGTGCAAGTGCAGCGGCGGC
GGCGCCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5802#0      CCGCCGGCCTAGACCAACAGCGATGGGGAGGTCGCCGTGCTGCGAGAAGGAGCACACTAA 60
consensus_5802#1      ------------------------------------------------------------
                                                                                  

consensus_5802#0      CAAGGGCGCGTGGACCAAGGAGGAGGACGAGCGCCTCGTCGCCTACATCCGCGCCCACGG 120
consensus_5802#1      ------------------------------------------------------------
                                                                                  

consensus_5802#0      CGAGGGCTGCTGGCGCTCGCTCCCCAAGGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTG 180
consensus_5802#1      --CCGACCTCAAGCGCGGCAACTTCACCGCCGACGAGGACGACCTCATCATCAAGCTCCA 58
                          * *  *  ****     *  **  **** **    *  ** *  *  ****  *  

consensus_5802#0      CCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGCCGA 240
consensus_5802#1      CAGCCTCCTCGGCAACAAGTAACTACGCTTCTCTTTTCTTGCCTTCTGCCTCACC-TCGC 117
                      * ****** * * * *** ** ** ***  *    *      *  *  * *****  ** 

consensus_5802#0      CGAGGACGACCTCATC-ATCAAGCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCG 299
consensus_5802#1      CT----CTCTTCCATCCATCGATTTTCATCATCT-------GTCAGGTGGTCTCTGATCG 166
                      *     *     **** *** *  * **    **         ** **************

consensus_5802#0      CGGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCC 359
consensus_5802#1      CGGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCC 226
                      ************************************************************

consensus_5802#0      GCCGGAAGCTTCTCGGCAGGGGGATCGACCCCGTCACGCACCGCCCCGTCAACGCCGCCG 419
consensus_5802#1      GCCGGAAGCTTCTCGGCAGGGGGATCGACCCCGTCACGCACCGCCCCGTCAACGCCGCCG 286
                      ************************************************************

consensus_5802#0      CCGCCACCATCTCCTTCCATCCCCAGCCGCCGCCAACGACGAAGGAGGAGCAGCTCATAC 479
consensus_5802#1      CCGCCACCATCTCCTTCCATCCCCAGCCGCCGCCAACGACGAAGGAGGAGCAGCTCATAC 346
                      ************************************************************

consensus_5802#0      TCAGCAAGCCGCCCAAGTGCCCCGACCTCAACCTGGACCTCTGCATCAGCCCGCCGTCGT 539
consensus_5802#1      TCAGCAAGCCGCCCAAGTGCCCCGACCTCAACCTGGACCTCTGCATCAGCCCGCCGTCGT 406
                      ************************************************************

consensus_5802#0      GCCAGGAAGAAGACGATGACTATGAGGCGAAGCCGGCGATGATCGTGAGGGCGACAGGAG 599
consensus_5802#1      GCCAGGAAGAAGACGATGACTATGAGGCGAAGCCGGCGATGATCGTGAGGGCGCC-GGAG 465
                      ***************************************************** * ****

consensus_5802#0      CTTGCATGCNGCCAGCACAGCAGGCAGCNCACTCATGCATTTCAGGCATGCAAGCCATCG 659
consensus_5802#1      CTGCAGCGCCGCC----------GCGGCGGCCTC---TGCTTCGGCTGC---AGCC-TCG 508
                      **     ** ***          ** **   ***      *** *       **** ***

consensus_5802#0      GCACTCCAAGAAGGAGTG---GCATAGTGGCAGCAGTGCAGGCAGGCAGGCAGGCAGCCA 716
consensus_5802#1      GC-CTCCA-GAAGGAGTGCAAGTGCAGCGGCGGCGGCGCCGGC----------------- 549
                      ** ***** *********   *   ** *** ** * ** ***                 

consensus_5802#0      GGCAGCCAGGCAAACAAACTTTCCTCATGGCACCAGGTCNTGGGCATGCTTCGACTTCAG 776
consensus_5802#1      ------------------------------------------------------------
                                                                                  

consensus_5802#0      AAGCCTCCCCAATGAAATGAAGATGATGCCTGCAAACCAAATGCCATGGATCGTTACAAC 836
consensus_5802#1      ------------------------------------------------------------
                                                                                  

consensus_5802#0      TTTCTCTGTGCTCTTTTGGGGTTCTTGATTTGCTTGAGCTGAGCTTTGGTTACTGCTTGA 896
consensus_5802#1      ------------------------------------------------------------
                                                                                  

consensus_5802#0      GTGTTAGTCCTTCTTAATTAGGATCAAGATAGAGGAATACTTCCTTTGGGGAGATGATCA 956
consensus_5802#1      ------------------------------------------------------------
                                                                                  

consensus_5802#0      GTGATCTTGTTGATCACTTCCTCCATTTTGTGTAAATACTGTTCCACTCATACTTAGTTC 1016
consensus_5802#1      ------------------------------------------------------------
                                                                                  

consensus_5802#0      AGTTGATGATATGGTTATTTAGGTTGTTGGATGTAAAAAA 1056
consensus_5802#1      ----------------------------------------