|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1556 fasta sequence
[CTAAATTGTAGAGTTACTCTATTATTATCTCCATATCTTTCTATGTATCGTTGGTTAGTTTGAAAATCGAGATTGAATTAGCCAACGTCATTTTTTTAAAAAAAAATGGAGGGAGTATTTTAGAGCTCACATGCACAAAAGTGCTTTCGTAAGCTTAATCATTAAGCATGGAGATATTTTATGTTTTGTTTTTATGCACACAGACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCGGACAACCTGAAGTATGTCGAGGCTGCTGACAGCAAGAAGATGGGCACAGTGCTTGCTTCCGCTGCTGCGCTGGTGGCCACCGTCTGCGCAGAGGCTGCAGAGCTCGCTGGGACCAACAGGTCCGGCGTGACTTCCGCCGTGAAAACTGGAGTCGAGAGCTGCTCCTCTGCTGAACTGCTCACCCTCACGGCCACTGCTGCTACATGTCTGAGAGGAGCTGCAGCACTGAAACTGAGGGCAGACGTCAGGGGAATCGGTAGCAACAACAACTCAGTTGGCACCAGCACTACTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGAGGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATCTGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCGGCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTGTGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTCTGGAAGAATGCCATCGAGGGCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTCTGAGCCGTCGTCGTCAGGCACACGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTCTATATGAACCTTTTAATAATTAGCTGTAGCTCTTAGCAAAATCCGAAATGTTTCATTCTATTATAAAAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACTACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAGTTCTGTAATATAGGTTGCATGGGCTG--TTTTTTTTTTTCCATTCTTCGGTCCTAACCTCACCTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGATTGGATGTTATAAAAAAAAAAAAAAAGA]
[+] EMBL AK111422 [CTAAATTGTAGAGTTACTCTATTATTATCTCCATATCTTTCTATGTATCGTTGGTTAGTTTGAAAATCGAGATTGAATTAGCCAACGTCATTTTTTTAAAAAAAAATGGAGGGAGTATTTTAGAGCTCACATGCACAAAAGTGCTTTCGTAAGCTTAATCATTAAGCATGGAGATATTTTATGTTTTGTTTTTATGCACACAGACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCGGACAACCTGAAGTATGTCGAGGCTGCTGACAGCAAGAAGATGGGCACAGTGCTTGCTTCCGCTGCTGCGCTGGTGGCCACCGTCTGCGCAGAGGCTGCAGAGCTCGCTGGGACCAACAGGTCCGGCGTGACTTCCGCCGTGAAAACTGGAGTCGAGAGCTGCTCCTCTGCTGAACTGCTCACCCTCACGGCCACTGCTGCTACATGTCTGAGAGGAGCTGCAGCACTGAAACTGAGGGCAGACGTCAGGGGAATCGGTAGCAACAACAACTCAGTTGGCACCAGCACTACTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGAGGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATCTGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCGGCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTGTGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTCTGGAAGAATGCCATCGAGGGCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTCTGAGCCGTCGTCGTCAGGCACACGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTCTATATGAACCTTTTAATAATTAGCTGTAGCTCTTAGCAAAATCCGAAATGTTTCATTCTATTATAAAAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACTACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAGTTCTGTAATATAGGTTGCATGGGCTG TTTTTTTTTTTCCATTCTTCGGTCCTAACCTCACCTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGAT ]
[-] EMBL CB645726 [ CAACTCAGTTGGCACCAGCACTACTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGAGGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATTTGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCGGCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTGTGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTTTGGAAGAATGCCATCGAGGGCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTTTGAGCCGTCGTTGTCAGGCACACGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTTTATATGAACCTTTTAATAATTAGCTGTAGCTTTTAGCAAAATCCGAAATGTTTCATTTTATTATAAAAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACTACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAGTTCTGTAATATAGGTTGCATGGGCTGTTTTTTTTTTTTTCCATTCTTCGGTCCTAACCTCACCTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGATTGGATGTTATAAAAAAAAAAAAAAAGA]
consensusID : consensus_5805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[TATATCCCTCTCAACGTAACCTGATTAAGTTGGTGGTTATGGAGCATTTCACAAGAGGAGTGGTGCTCGGGATGCCTTCCCTCCAAAGATGCCATTCACTGTCATGTCAAATGGCAGAGCGCCCACAGATTGATGTGCGGAAGGCAGTGATCCAGTGTAAAGAGGAATCACGGTGCTCAAAATGCTGCCATCCTGCAGATATGCCGATCATTCCTGAGCAGGCAATGGAGTTCCTCTCTCGAACATGGAGCCCCTCATCATCAGATTTCTTCCAAACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCCGGACAACCTGAAGTATGTC]
[+] EMBL CB645725 [TATATCCCTCTCAACGTAACCTGATTAAGTTGGTGGTTATGGAGCATTTCACAAGAGGAGTGGTGCTCGGGATGCCTTCCCTCCAAAGATGCCATTCACTGTCATGTCAAATGGCAGAGCGCCCACAGATTGATGTGCGGAAGGCAGTGATCCAGTGTAAAGAGGAATCACGGTGCTCAAAATGCTGCCATCCTGCAGATATGCCGATCATTCCTGAGCAGGCAATGGAGTTCCTCTCTCGAACATGGAGCCCCTCATCATCAGATTTCTTCCAAACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCCGGACAACCTGAAGTATGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5805#0 -------------------------------------------------CTAAATTGTAG 11
consensus_5805#1 TATATCCCTCTCAACGTAACCTGATTAAGTTGGTGGTTATGGAGCATTTCACAAGAGGAG 60
* ** * **
consensus_5805#0 AGTTACTCT--ATTATTATCTCCATATCTTTCTATGTATCGTTG-GTTAGTTTGAAAATC 68
consensus_5805#1 TGGTGCTCGGGATGCCTTCCCTCCAAAGATGCCATTCACTGTCATGTCAAATGGCAGAGC 120
* * *** ** * * * * * * ** * ** ** * * * * * *
consensus_5805#0 G-----AGATTGAATTAGCCAACGTCATTTTTTTAAAAAAAAATGGAGGGA--GTATTTT 121
consensus_5805#1 GCCCACAGATTGA-TGTGCGGAAGGCAGTGATCCAGTGTAAAGAGGAATCACGGTGCTCA 179
* ******* * ** * * ** * * * *** *** * ** *
consensus_5805#0 AGA-GCTCACATGC-ACAAAAGTGCT-----TTCGTAAGCT--TAATCA--TTAAGCATG 170
consensus_5805#1 AAATGCTGCCATCCTGCAGATATGCCGATCATTCCTGAGCAGGCAATGGAGTTCCTCTCT 239
* * *** *** * ** * *** *** * *** *** ** *
consensus_5805#0 GAGATATTTTATGTTTTGTTTTTA---TGCACACAGACCCTTAGAACATCATCTGAACAC 227
consensus_5805#1 CGAACATGGAGCCCCTCATCATCAGATTTCTTCCAAACCCTTAGAACATCATCTGAACAC 299
* ** * * * * * * ** ************************
consensus_5805#0 CGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGA 287
consensus_5805#1 CGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGA 359
************************************************************
consensus_5805#0 CATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAA 347
consensus_5805#1 CATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAA 419
************************************************************
consensus_5805#0 CTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTC 407
consensus_5805#1 CTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTC 479
************************************************************
consensus_5805#0 ACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGC 467
consensus_5805#1 ACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGC 539
************************************************************
consensus_5805#0 GCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGA 527
consensus_5805#1 GCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGA 599
************************************************************
consensus_5805#0 ACTGAGGCC-GGACAACCTGAAGTATGTCGAGGCTGCTGACAGCAAGAAGATGGGCACAG 586
consensus_5805#1 ACTGAGGCCCGGACAACCTGAAGTATGTC------------------------------- 628
********* *******************
consensus_5805#0 TGCTTGCTTCCGCTGCTGCGCTGGTGGCCACCGTCTGCGCAGAGGCTGCAGAGCTCGCTG 646
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 GGACCAACAGGTCCGGCGTGACTTCCGCCGTGAAAACTGGAGTCGAGAGCTGCTCCTCTG 706
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 CTGAACTGCTCACCCTCACGGCCACTGCTGCTACATGTCTGAGAGGAGCTGCAGCACTGA 766
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 AACTGAGGGCAGACGTCAGGGGAATCGGTAGCAACAACAACTCAGTTGGCACCAGCACTA 826
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 CTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGA 886
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 GGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATC 946
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 TGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCG 1006
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 GCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTG 1066
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 TGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTCTGGAAGAATGCCATCGAGG 1126
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 GCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTCTGAGCCGTCGTCGTCAGGCACA 1186
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 CGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTCTATATG 1246
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 AACCTTTTAATAATTAGCTGTAGCTCTTAGCAAAATCCGAAATGTTTCATTCTATTATAA 1306
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 AAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACT 1366
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 ACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAG 1426
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 TTCTGTAATATAGGTTGCATGGGCTGTTTTTTTTTTTCCATTCTTCGGTCCTAACCTCAC 1486
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 CTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGATTGGATGTTATAAAAAAA 1546
consensus_5805#1 ------------------------------------------------------------
consensus_5805#0 AAAAAAAAGA 1556
consensus_5805#1 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||