cluster # 5816

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Oryza sativa
cluster # 5816 cluster # 5816 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5816#0 length = 540 sequences # 1

consensus_5816#1 length = 466 sequences # 2

consensusID : consensus_5816#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [CTCAGGAATCCGGCGCCGCAGGCCGAGGCGATCGAGCCGGGCGTATCTATCTTGTACACACAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGAAGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCAACCAGGTGAGCCTGCCTGCCTCCCCGCCACAGCTAGCGCCGCCCGTCCGGCCGTGATCCGCGCGCGGCTAACTTTCCGGTCGATTAATCCTCTCGCCGTCGATGTGGAAGGAAACGCGCGCCGTGGATTAGCGGCGTGCTCGATCGAGCTTTGGCCAATTCAATCAATTTCACTCCCTTT]

[+] EMBL AK111341             [CTCAGGAATCCGGCGCCGCAGGCCGAGGCGATCGAGCCGGGCGTATCTATCTTGTACACACAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGAAGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCAACCAGGTGAGCCTGCCTGCCTCCCCGCCACAGCTAGCGCCGCCCGTCCGGCCGTGATCCGCGCGCGGCTAACTTTCCGGTCGATTAATCCTCTCGCCGTCGATGTGGAAGGAAACGCGCGCCGTGGATTAGCGGCGTGCTCGATCGAGCTTTGGCCAATTCAATCAATTTCACTCCCTTT]




>consensus_5816#0
CTCAGGAATCCGGCGCCGCAGGCCGAGGCGATCGAGCCGGGCGTATCTATCTTGTACACA
CAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGA
AGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGA
AGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGG
CGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCT
TCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCA
ACCAGGTGAGCCTGCCTGCCTCCCCGCCACAGCTAGCGCCGCCCGTCCGGCCGTGATCCG
CGCGCGGCTAACTTTCCGGTCGATTAATCCTCTCGCCGTCGATGTGGAAGGAAACGCGCG
CCGTGGATTAGCGGCGTGCTCGATCGAGCTTTGGCCAATTCAATCAATTTCACTCCCTTT

consensusID : consensus_5816#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 466
fasta sequence

                              [GTACACACAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGAAGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCAACCAGGCGGTTCTCAACTTTGTCTACCTGGGCATCGCGACAGCGGTTGTTTCATTTCTTCAGGTGGCGTGCTGGACAATGACTGGAGAACGGCAGGCGACACGCATTCGATCTCTATACCTCAAATCTGTCCTGAGACAGGATATAGCATTCTTTGATG]

[+] EMBL AU181384             [GTACACACAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGAAGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCAACCAGGCGGTTCTCAACTTTGTCTACCTGGGCATCGCGACAGCGGTTGTTTCATTTCTTCAGGTGGCGTGCTGGACAATGACTGGAGAACGGCAGGCGACACGCATTCGATCTCTATACCTCAAATCTGTCCTGAGACAGGATATAGCATTCTTTGATG]
[+] EMBL AU181216             [             AGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGAAGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCAACCAGGCGGTTCTCAACTTTGTCTACCTGGGCATCGCGACAGCGGTTGTTTCATTTCTTCAGGTGGCGTGCTGGACAATGACTGGAGAACGGCAGGCGACACGCATTCGATCTCTATACCTCAAATCTGTCCTGA                        ]




>consensus_5816#1
GTACACACAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAG
GAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGAC
GCCGGGAAGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTG
CTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACC
GTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCAC
CGCGTCAACCAGGCGGTTCTCAACTTTGTCTACCTGGGCATCGCGACAGCGGTTGTTTCA
TTTCTTCAGGTGGCGTGCTGGACAATGACTGGAGAACGGCAGGCGACACGCATTCGATCT
CTATACCTCAAATCTGTCCTGAGACAGGATATAGCATTCTTTGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5816#0      CTCAGGAATCCGGCGCCGCAGGCCGAGGCGATCGAGCCGGGCGTATCTATCTTGTACACA 60
consensus_5816#1      -----------------------------------------------------GTACACA 7
                                                                           *******

consensus_5816#0      CAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGA 120
consensus_5816#1      CAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAGGAGAAGA 67
                      ************************************************************

consensus_5816#0      AGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGA 180
consensus_5816#1      AGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGA 127
                      ************************************************************

consensus_5816#0      AGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGG 240
consensus_5816#1      AGAAGGTGTCGTTCACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGG 187
                      ************************************************************

consensus_5816#0      CGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCT 300
consensus_5816#1      CGGTCGGCACGGTGGCGGCGCTCGCCAACGGGGTGTCGCAGCCGCTCATGACCGTCATCT 247
                      ************************************************************

consensus_5816#0      TCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCA 360
consensus_5816#1      TCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCACCGCGTCA 307
                      ************************************************************

consensus_5816#0      ACCAGGTGAGCCTGCCTGCCTCCCCGCCACAGCTAGCGCCGCCCGTCCGGCCGTGATCCG 420
consensus_5816#1      ACCAGGCGGTTCT--CAACTTTGTCTACCTGG---GCATCGCGACAGCGGTTGTTTCATT 362
                      ****** *   **  *  * *   *  *   *   **  ***     ***  **      

consensus_5816#0      CGCGCGGCTAACTTTCCGGTCGATTAATCCTCTCGCCGTCGATGTGGAAGGAAACGCGCG 480
consensus_5816#1      TCTTCAGGTGGCGTGCTGGACAATGA--CTGGAGAACGGCAGGCGACACGCATTCGATCT 420
                          * * *  * * * ** * ** *  *       ** *       * * *  **  * 

consensus_5816#0      CCGTGGATTAGCGGCGTGCTCGATCGAGCTTTGGCCAATTCAATCAATTTCACTCCCTTT 540
consensus_5816#1      CTATACCTCAAATCTGTCCTGAGACAGGATATAGC--ATTCT-TTGATG----------- 466
                      *  *   * *     ** **    *  * * * **  ****  *  **