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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1181 fasta sequence
[GATGATGGAGGAAGGAGAGAAGCAGAGCAGCGGGGGGCGGTGGCGGTGTAGGTGGCTCGTCGACGTCGGCCGGTGGCGCCCCTCCCCCGCCGAGTTCCAAGCCGCCGCCGCCGTCCTCCCGCCGCACGACCGCCCCGCCATCCACAGGTTCGTCAGAGAAGAAGACAGGAAACGAGCGCTCGTCAGCCGCCTGCTCAAGTACTCGCTCGTGCACCATGCCCTTGGAATGCCATTCCACCAAATTCGCATCAACCGCACGCTTGAAGGGAAGCCCTATCTGAATAAAAATGTCAACCTTCCTGGCTTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGCCTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCCCAACGAGAAACTGCCCTGGAGTTCATCAACAATTTCACTTCCTATCTCACAGATCATGAGTGGAACTGCATTGTTACTGCAGACAGTCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTCAAAGCTACAGGTGCTGGCGTTGGATTCGGGCTGCAACGTTTGGAATTCCACCATATGAATTGGACTAATATTTCTCTCTGTATTGATGGAGAAGAGGCTAGGAAATGGATGTTTTGGCTTTTCAAGATTGATGAAATGCATTTGGCATCCATTGCGAAAGGGCATCCAGAGGATGCTATTGACAGCTTCAGGAGAACATTATCTGATGTGGTTATTCAGGAGGGAGAATTGCATACGGCAATAGAAATTCCAGAAGAAGCTTTCACTCTATTGACAGTGGAACACCTTATACAGTTACATGATTAAATGGTCTTCTTGAATTTTGCGGTGACATACTAATGCAGGACTAAAATCAACAAATTGTGAGTGTATCCTGAAAGTTAAAATACATACATAGCACACCAAAATTAGGAAAAGTATCCTTGTATTTGCTCTCGGTGCTTCTGCAGAAATGAGAGCTTAAGATGTTAGGGCCTG-TTTTTTCTTTCATAACAGAGGAGACGCTTGATATTGTAAGCTTTGACTAGTTTGGTAGTGTTTGCAAAGGCCCATTTTTTTAGGCAATTGTAAAGGCAGATTGATGATTGTTCACTGGAAAAATCTAATCAAAAAAACTATTAGCAGCCAAAAAAAAAGA]
[+] EMBL AK071502 [GATGATGGAGGAAGGAGAGAAGCAGAGCAGCGGGGGGCGGTGGCGGTGTAGGTGGCTCGTCGACGTCGGCCGGTGGCGCCCCTCCCCCGCCGAGTTCCAAGCCGCCGCCGCCGTCCTCCCGCCGCACGACCGCCCCGCCATCCACAGGTTCGTCAGAGAAGAAGACAGGAAACGAGCGCTCGTCAGCCGCCTGCTCAAGTACTCGCTCGTGCACCATGCCCTTGGAATGCCATTCCACCAAATTCGCATCAACCGCACGCTTGAAGGGAAGCCCTATCTGAATAAAAATGTCAACCTTCCTGGCTTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGCCTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCCCAACGAGAAACTGCCCTGGAGTTCATCAACAATTTCACTTCCTATCTCACAGATCATGAGTGGAACTGCATTGTTACTGCAGACAGTCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTCAAAGCTACAGGTGCTGGCGTTGGATTCGGGCTGCAACGTTTGGAATTCCACCATATGAATTGGACTAATATTTCTCTCTGTATTGATGGAGAAGAGGCTAGGAAATGGATGTTTTGGCTTTTCAAGATTGATGAAATGCATTTGGCATCCATTGCGAAAGGGCATCCAGAGGATGCTATTGACAGCTTCAGGAGAACATTATCTGATGTGGTTATTCAGGAGGGAGAATTGCATACGGCAATAGAAATTCCAGAAGAAGCTTTCACTCTATTGACAGTGGAACACCTTATACAGTTACATGATTAAATGGTCTTCTTGAATTTTGCGGTGACATACTAATGCAGGACTAAAATCAACAAATTGTGAGTGTATCCTGAAAGTTAAAATACATACATAGCACACCAAAATTAGGAAAAGTATCCTTGTATTTGCTCTCGGTGCTTCTGCAGAAATGAGAGCTTAAGATGTTAGGGCCTG TTTTTTCTTTCATAACAGAGGAGACGCTTGATATTGTAAGCTTTGACTAGTTTGGTAGTGTTTGCAAAGGC ]
[-] EMBL CB658051 [ GCATCTCCAAGCCTCAACGAGAAACTGCCCTGGAGTTCATCAACAATTTCACTTCCTATCTCACTGATCATGAGTGGAACTGCATTGTTACTGCAGGCAGCCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTCAAAGCTACAGGTGCTGGCGTTGGATTTGGGTTGCAACGTTTGGAATTCCACCATATGAATTGGACTAATATTTCTCTCCGTATTGATGGAGAAGAGGATAGGAAATGGAGGTTTTGGCTTTTCAAGATTGATGAAAAGCATTTGGCATCCATTGCGAAAGGGCATCCAGAGGATGCTATTGACAGCTTCAGGAGAACATTATCTGATGTGGTTATTCAGGAGGGAGAATTGCATACGGCAATAGAAATTCCAGAAGAAGCTTTCACTCTATTGACAGTGGAACAACTTATACAGTTACATGATTAAATGGTCTTCTTGAATTTTGCGGTGACATATTAATGCAGGACTAAAATCAACAAATTGTGAGTGTATCCTGAAAGTTAAAATATATACATAGCACACCAAAATTAGGAAAAGTATCCTTGTATTTGCTCTCGGTGCTTCTGCAGAAATGAGAGCTT AGGGGTTAGGGCCTGTTTTTTTTTTTCATAACAGAGAAGACACTTGATATTGTAAGCTTTGACTAGTTTGGTAGTGTTTGCAAAGGCCCATTTTTTTAGGCAATTGTAAAGGCAGATTGATGATTGTTCACTGGAAAAATCTAATCAAAAAAACTATTAGCAGCCAAAAAAAAAGA]
consensusID : consensus_5817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence
[AGCGTGGGGAGGTGGCGGTGTAGGTGGCTCGTCGACGTCGGCCGGTGGCGCCCCTCCCCCGCTGAGTTCCAAGCCGCCGCCGCCCTCCTCCCGCCGCACGACCGCCCCGCCATCCACAGGTTTTTCCAACCAATTCCTCTTCCCCCACATTGATTCCACCCACTCACTACTGAAATTCAATTCAGCCTCTAGATTTTTCTCCTCCTCCTCACGAGTCACGACCTCACCGCTGCAGGTTCGTCAGAGAAGATGACAGGAAACGGGCGCTCGTCAGTCGCCTTCTCCAATACTCGCTCGTGCACCATGCTCTTGGAATCCCATTCCACCAAATTCGCATCAACCGCACGCTTGAAGGGAAGCCCTACCTGAATAAAAATGCCAACTTTCCTGGCTTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGCCTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCTCAACGAGAAACTGCCCTGGAGTTCATCAACAATTTCACTTCCTATCTCACTGATCATGAGTGGAACTGCATTGTTACTGCAGGCAGCCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTCAAAGCTACAGGTGCTGGCGTTGGATTTGGGTTGCAACGTTTGGAATTCCACCATATGAATTGGACTAATATTTCTCTCCGTATTGATGGAGAAGAGGATAGGAAATGGAGGTTTTGGCTTTTCAA]
[+] EMBL CB658050 [AGCGTGGGGAGGTGGCGGTGTAGGTGGCTCGTCGACGTCGGCCGGTGGCGCCCCTCCCCCGCTGAGTTCCAAGCCGCCGCCGCCCTCCTCCCGCCGCACGACCGCCCCGCCATCCACAGGTTTTTCCAACCAATTCCTCTTCCCCCACATTGATTCCACCCACTCACTACTGAAATTCAATTCAGCCTCTAGATTTTTCTCCTCCTCCTCACGAGTCACGACCTCACCGCTGCAGGTTCGTCAGAGAAGATGACAGGAAACGGGCGCTCGTCAGTCGCCTTCTCCAATACTCGCTCGTGCACCATGCTCTTGGAATCCCATTCCACCAAATTCGCATCAACCGCACGCTTGAAGGGAAGCCCTACCTGAATAAAAATGCCAACTTTCCTGGCTTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGCCTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCTCAACGAGAAACTGCCCTGGAGTTCATCAACAATTTCACTTCCTATCTCACTGATCATGAGTGGAACTGCATTGTTACTGCAGGCAGCCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTCAAAGCTACAGGTGCTGGCGTTGGATTTGGGTTGCAACGTTTGGAATTCCACCATATGAATTGGACTAATATTTCTCTCCGTATTGATGGAGAAGAGGATAGGAAATGGAGGTTTTGGCTTTTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5817#0 GATGATGGAGGAAGGAGAGAAGCAGAGCAGCGGGGGGCGGTGGCGGTGTAGGTGGCTCGT 60
consensus_5817#1 ----------------------------AGCGTGGGGAGGTGGCGGTGTAGGTGGCTCGT 32
**** **** **********************
consensus_5817#0 CGACGTCGGCCGGTGGCGCCCCTCCCCCGCCGAGTTCCAAGCCGCCGCCGCCGTCCTCCC 120
consensus_5817#1 CGACGTCGGCCGGTGGCGCCCCTCCCCCGCTGAGTTCCAAGCCGCCGCCGCCCTCCTCCC 92
****************************** ********************* *******
consensus_5817#0 GCCGCACGACCGCCCCGCCATCCACAGGTT------------------------------ 150
consensus_5817#1 GCCGCACGACCGCCCCGCCATCCACAGGTTTTTCCAACCAATTCCTCTTCCCCCACATTG 152
******************************
consensus_5817#0 ------------------------------------------------------------
consensus_5817#1 ATTCCACCCACTCACTACTGAAATTCAATTCAGCCTCTAGATTTTTCTCCTCCTCCTCAC 212
consensus_5817#0 --------------------------CGTCAGAGAAGAAGACAGGAAACGAGCGCTCGTC 184
consensus_5817#1 GAGTCACGACCTCACCGCTGCAGGTTCGTCAGAGAAGATGACAGGAAACGGGCGCTCGTC 272
************ *********** *********
consensus_5817#0 AGCCGCCTGCTCAAGTACTCGCTCGTGCACCATGCCCTTGGAATGCCATTCCACCAAATT 244
consensus_5817#1 AGTCGCCTTCTCCAATACTCGCTCGTGCACCATGCTCTTGGAATCCCATTCCACCAAATT 332
** ***** *** * ******************** ******** ***************
consensus_5817#0 CGCATCAACCGCACGCTTGAAGGGAAGCCCTATCTGAATAAAAATGTCAACCTTCCTGGC 304
consensus_5817#1 CGCATCAACCGCACGCTTGAAGGGAAGCCCTACCTGAATAAAAATGCCAACTTTCCTGGC 392
******************************** ************* **** ********
consensus_5817#0 TTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGC 364
consensus_5817#1 TTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGC 452
************************************************************
consensus_5817#0 CTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCCCAACGAGAAACTGCCCTGGAGTTC 424
consensus_5817#1 CTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCTCAACGAGAAACTGCCCTGGAGTTC 512
*********************************** ************************
consensus_5817#0 ATCAACAATTTCACTTCCTATCTCACAGATCATGAGTGGAACTGCATTGTTACTGCAGAC 484
consensus_5817#1 ATCAACAATTTCACTTCCTATCTCACTGATCATGAGTGGAACTGCATTGTTACTGCAGGC 572
************************** ******************************* *
consensus_5817#0 AGTCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTC 544
consensus_5817#1 AGCCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTC 632
** *********************************************************
consensus_5817#0 AAAGCTACAGGTGCTGGCGTTGGATTCGGGCTGCAACGTTTGGAATTCCACCATATGAAT 604
consensus_5817#1 AAAGCTACAGGTGCTGGCGTTGGATTTGGGTTGCAACGTTTGGAATTCCACCATATGAAT 692
************************** *** *****************************
consensus_5817#0 TGGACTAATATTTCTCTCTGTATTGATGGAGAAGAGGCTAGGAAATGGATGTTTTGGCTT 664
consensus_5817#1 TGGACTAATATTTCTCTCCGTATTGATGGAGAAGAGGATAGGAAATGGAGGTTTTGGCTT 752
****************** ****************** *********** **********
consensus_5817#0 TTCAAGATTGATGAAATGCATTTGGCATCCATTGCGAAAGGGCATCCAGAGGATGCTATT 724
consensus_5817#1 TTCAA------------------------------------------------------- 757
*****
consensus_5817#0 GACAGCTTCAGGAGAACATTATCTGATGTGGTTATTCAGGAGGGAGAATTGCATACGGCA 784
consensus_5817#1 ------------------------------------------------------------
consensus_5817#0 ATAGAAATTCCAGAAGAAGCTTTCACTCTATTGACAGTGGAACACCTTATACAGTTACAT 844
consensus_5817#1 ------------------------------------------------------------
consensus_5817#0 GATTAAATGGTCTTCTTGAATTTTGCGGTGACATACTAATGCAGGACTAAAATCAACAAA 904
consensus_5817#1 ------------------------------------------------------------
consensus_5817#0 TTGTGAGTGTATCCTGAAAGTTAAAATACATACATAGCACACCAAAATTAGGAAAAGTAT 964
consensus_5817#1 ------------------------------------------------------------
consensus_5817#0 CCTTGTATTTGCTCTCGGTGCTTCTGCAGAAATGAGAGCTTAAGATGTTAGGGCCTGTTT 1024
consensus_5817#1 ------------------------------------------------------------
consensus_5817#0 TTTCTTTCATAACAGAGGAGACGCTTGATATTGTAAGCTTTGACTAGTTTGGTAGTGTTT 1084
consensus_5817#1 ------------------------------------------------------------
consensus_5817#0 GCAAAGGCCCATTTTTTTAGGCAATTGTAAAGGCAGATTGATGATTGTTCACTGGAAAAA 1144
consensus_5817#1 ------------------------------------------------------------
consensus_5817#0 TCTAATCAAAAAAACTATTAGCAGCCAAAAAAAAAGA 1181
consensus_5817#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||