cluster # 5823

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Oryza sativa
cluster # 5823 cluster # 5823 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5823#0 length = 525 sequences # 2

consensus_5823#1 length = 523 sequences # 1

consensusID : consensus_5823#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 525
fasta sequence

                              [GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACGAGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAGCAATTACATTGAATCAATTACATGTTCAAGCAAATCTGTCATACATGACTTATTTAGCACACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCATATTCTTCACTCCAGAAGCTGTGGCCATTCCCCACTTTCCCCCTCCGATCTTCGTTCCTATCCCCCCGCCGCCGGCGCCATGGATTAAGTCTTTGGTAGGCCAAATTTTGAAAAACCAGGTGCTGTCGGTGGCCAAGGCGGAGGAGGAACAA-CT-TTACAAGCAGATAGCCCCGCTAGACCGCTCTA-ACCCGGACGACATCGAGGCGCTCCGCGAGCGCCGGATCCT]

[+] EMBL AW155572             [GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACGAGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAGCAATTACATTGAATCAATTACATGTTCAAGCAAATCTGTCATACATGACTTATTTAGCACACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCATATTCTTCACTCCAGAAGCTGTGGCCATTCCCCACTTTCCCCCTCCGATCTTCGTTCCTATCCCCCCGCCGCCGGCGCCATGGATTAAGTCTTTGGTAGGCCAAATTTTGAAAAACCAGGTGCTGTCGGTGGCCAAGGCGGAGGAGGAACAA CT TTACAAGCAGATAGCCCCGCTAGACCGCTCTA ACCCGGACGACATCGAGGCGCTCCGCGAGCGCCGGATCCT]
[+] EMBL AW155571             [GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACGAGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAGCAATTACATTGAAGCAATTACATGTTCAAGCAAATCTGTCATACATGACTTATTTAGCACACACAAACATGCATATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCATATTCTTCACTCCAGAAGCTGTCGCCATCCCCCACTTTCCCCCTCCGATCTCCGCTCCGATCCCCCCTCCGGCGGGGGCATTGATTAATTCATTTGTAGGCCAATATTTGTAAAA CAGGTGCTGTCGGTGGCCAAGGCGGTGGAGG ACAACCTCTAACGAGCAGATAGCCGCGCTAGACCGC CTAGACCCGGACGACATCGAGGCGCTCCGCGAGCGCCGGA    ]




>consensus_5823#0
GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACG
AGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGA
AACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAG
CAATTACATTGAATCAATTACATGTTCAAGCAAATCTGTCATACATGACTTATTTAGCAC
ACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCAT
ATTCTTCACTCCAGAAGCTGTGGCCATTCCCCACTTTCCCCCTCCGATCTTCGTTCCTAT
CCCCCCGCCGCCGGCGCCATGGATTAAGTCTTTGGTAGGCCAAATTTTGAAAAACCAGGT
GCTGTCGGTGGCCAAGGCGGAGGAGGAACAACTTTACAAGCAGATAGCCCCGCTAGACCG
CTCTAACCCGGACGACATCGAGGCGCTCCGCGAGCGCCGGATCCT

consensusID : consensus_5823#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACGAGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCATTACTACTCCACCATTGAAGCAATTACATTGAATCAATTACCTGTTCAAGCAAATCTGTTATACATGACTTATTTAGCTCACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCATATTCTTCACTGCAGAAACTGTGGCCATCCACCACTTCCCCCATCCGATCTCCGGTCCTATCCCCCCGCCGCCGGCGCCATTGATTAGTCCTTCTTAGGCCCAATCTTGAAAAAACAGGGTGCTGTCGGGGGCCAAGGCGGAGGAAGACAACCTCTACGAACAGATAGCCGGGCTAGACCGCCTAGACGCGGATTATTTCGAGGCGCTCCGCCAGCGCCCGATT]

[+] EMBL AW155569             [GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACGAGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCATTACTACTCCACCATTGAAGCAATTACATTGAATCAATTACCTGTTCAAGCAAATCTGTTATACATGACTTATTTAGCTCACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCATATTCTTCACTGCAGAAACTGTGGCCATCCACCACTTCCCCCATCCGATCTCCGGTCCTATCCCCCCGCCGCCGGCGCCATTGATTAGTCCTTCTTAGGCCCAATCTTGAAAAAACAGGGTGCTGTCGGGGGCCAAGGCGGAGGAAGACAACCTCTACGAACAGATAGCCGGGCTAGACCGCCTAGACGCGGATTATTTCGAGGCGCTCCGCCAGCGCCCGATT]




>consensus_5823#1
GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACG
AGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGA
AACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCATTACTACTCCACCATTGAAG
CAATTACATTGAATCAATTACCTGTTCAAGCAAATCTGTTATACATGACTTATTTAGCTC
ACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCAT
ATTCTTCACTGCAGAAACTGTGGCCATCCACCACTTCCCCCATCCGATCTCCGGTCCTAT
CCCCCCGCCGCCGGCGCCATTGATTAGTCCTTCTTAGGCCCAATCTTGAAAAAACAGGGT
GCTGTCGGGGGCCAAGGCGGAGGAAGACAACCTCTACGAACAGATAGCCGGGCTAGACCG
CCTAGACGCGGATTATTTCGAGGCGCTCCGCCAGCGCCCGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5823#0      GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACG 60
consensus_5823#1      GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACG 60
                      ************************************************************

consensus_5823#0      AGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGA 120
consensus_5823#1      AGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGA 120
                      ************************************************************

consensus_5823#0      AACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAG 180
consensus_5823#1      AACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCATTACTACTCCACCATTGAAG 180
                      **************************************** ****** ************

consensus_5823#0      CAATTACATTGAATCAATTACATGTTCAAGCAAATCTGTCATACATGACTTATTTAGCAC 240
consensus_5823#1      CAATTACATTGAATCAATTACCTGTTCAAGCAAATCTGTTATACATGACTTATTTAGCTC 240
                      ********************* ***************** ****************** *

consensus_5823#0      ACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCAT 300
consensus_5823#1      ACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCAT 300
                      ************************************************************

consensus_5823#0      ATTCTTCACTCCAGAAGCTGTGGCCATTCCCCACTTTCCCCCTCCGATCTTCGTTCCTAT 360
consensus_5823#1      ATTCTTCACTGCAGAAACTGTGGCCATCCACCACTTCCCCCATCCGATCTCCGGTCCTAT 360
                      ********** ***** ********** * ****** **** ******** ** ******

consensus_5823#0      CCCCCCGCCGCCGGCGCCATGGATTAAGTCTTTGGTAGGCCAAATTTTGAAAAACCAGG- 419
consensus_5823#1      CCCCCCGCCGCCGGCGCCATTGATTA-GTCCTTCTTAGGCCCAATCTTGAAAAAACAGGG 419
                      ******************** ***** *** **  ****** *** ******** **** 

consensus_5823#0      TGCTGTCGGTGGCCAAGGCGGAGGAGGAACAACTTTACAAGCAGATAGCCCCGCTAGACC 479
consensus_5823#1      TGCTGTCGGGGGCCAAGGCGGAGGAAGACAACCTCTACGAACAGATAGCCGGGCTAGACC 479
                      ********* *************** **  * ** *** * *********  ********

consensus_5823#0      GCTCTAACCCGGACGACATCGAGGCGCTCCGCGAGCGCCGGATCCT 525
consensus_5823#1      GCCTAGACGCGGATTATTTCGAGGCGCTCCGCCAGCGCCCGATT-- 523
                      **    ** ****  *  ************** ****** ***