These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5823#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 525 fasta sequence [GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACGAGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAGCAATTACATTGAATCAATTACATGTTCAAGCAAATCTGTCATACATGACTTATTTAGCACACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCATATTCTTCACTCCAGAAGCTGTGGCCATTCCCCACTTTCCCCCTCCGATCTTCGTTCCTATCCCCCCGCCGCCGGCGCCATGGATTAAGTCTTTGGTAGGCCAAATTTTGAAAAACCAGGTGCTGTCGGTGGCCAAGGCGGAGGAGGAACAA-CT-TTACAAGCAGATAGCCCCGCTAGACCGCTCTA-ACCCGGACGACATCGAGGCGCTCCGCGAGCGCCGGATCCT] [+] EMBL AW155572 [GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACGAGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAGCAATTACATTGAATCAATTACATGTTCAAGCAAATCTGTCATACATGACTTATTTAGCACACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCATATTCTTCACTCCAGAAGCTGTGGCCATTCCCCACTTTCCCCCTCCGATCTTCGTTCCTATCCCCCCGCCGCCGGCGCCATGGATTAAGTCTTTGGTAGGCCAAATTTTGAAAAACCAGGTGCTGTCGGTGGCCAAGGCGGAGGAGGAACAA CT TTACAAGCAGATAGCCCCGCTAGACCGCTCTA ACCCGGACGACATCGAGGCGCTCCGCGAGCGCCGGATCCT] [+] EMBL AW155571 [GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACGAGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAGCAATTACATTGAAGCAATTACATGTTCAAGCAAATCTGTCATACATGACTTATTTAGCACACACAAACATGCATATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCATATTCTTCACTCCAGAAGCTGTCGCCATCCCCCACTTTCCCCCTCCGATCTCCGCTCCGATCCCCCCTCCGGCGGGGGCATTGATTAATTCATTTGTAGGCCAATATTTGTAAAA CAGGTGCTGTCGGTGGCCAAGGCGGTGGAGG ACAACCTCTAACGAGCAGATAGCCGCGCTAGACCGC CTAGACCCGGACGACATCGAGGCGCTCCGCGAGCGCCGGA ] consensusID : consensus_5823#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACGAGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCATTACTACTCCACCATTGAAGCAATTACATTGAATCAATTACCTGTTCAAGCAAATCTGTTATACATGACTTATTTAGCTCACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCATATTCTTCACTGCAGAAACTGTGGCCATCCACCACTTCCCCCATCCGATCTCCGGTCCTATCCCCCCGCCGCCGGCGCCATTGATTAGTCCTTCTTAGGCCCAATCTTGAAAAAACAGGGTGCTGTCGGGGGCCAAGGCGGAGGAAGACAACCTCTACGAACAGATAGCCGGGCTAGACCGCCTAGACGCGGATTATTTCGAGGCGCTCCGCCAGCGCCCGATT] [+] EMBL AW155569 [GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACGAGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGAAACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCATTACTACTCCACCATTGAAGCAATTACATTGAATCAATTACCTGTTCAAGCAAATCTGTTATACATGACTTATTTAGCTCACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCATATTCTTCACTGCAGAAACTGTGGCCATCCACCACTTCCCCCATCCGATCTCCGGTCCTATCCCCCCGCCGCCGGCGCCATTGATTAGTCCTTCTTAGGCCCAATCTTGAAAAAACAGGGTGCTGTCGGGGGCCAAGGCGGAGGAAGACAACCTCTACGAACAGATAGCCGGGCTAGACCGCCTAGACGCGGATTATTTCGAGGCGCTCCGCCAGCGCCCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5823#0 GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACG 60 consensus_5823#1 GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCATGAAAGAAGGACG 60 ************************************************************ consensus_5823#0 AGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGA 120 consensus_5823#1 AGATTTAATTACTTTCAAACATGCCATATTACAATACTAGATTCTAAAATACATGCATGA 120 ************************************************************ consensus_5823#0 AACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCACTACTACACCACCATTGAAG 180 consensus_5823#1 AACATAAATACCAAACAAAGGTGGGTCTTCAAAGCTCTCATTACTACTCCACCATTGAAG 180 **************************************** ****** ************ consensus_5823#0 CAATTACATTGAATCAATTACATGTTCAAGCAAATCTGTCATACATGACTTATTTAGCAC 240 consensus_5823#1 CAATTACATTGAATCAATTACCTGTTCAAGCAAATCTGTTATACATGACTTATTTAGCTC 240 ********************* ***************** ****************** * consensus_5823#0 ACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCAT 300 consensus_5823#1 ACACAAACATGCCTATTATGTACCATTCAACTGCTTCTTAGTACCAACCACCACCACCAT 300 ************************************************************ consensus_5823#0 ATTCTTCACTCCAGAAGCTGTGGCCATTCCCCACTTTCCCCCTCCGATCTTCGTTCCTAT 360 consensus_5823#1 ATTCTTCACTGCAGAAACTGTGGCCATCCACCACTTCCCCCATCCGATCTCCGGTCCTAT 360 ********** ***** ********** * ****** **** ******** ** ****** consensus_5823#0 CCCCCCGCCGCCGGCGCCATGGATTAAGTCTTTGGTAGGCCAAATTTTGAAAAACCAGG- 419 consensus_5823#1 CCCCCCGCCGCCGGCGCCATTGATTA-GTCCTTCTTAGGCCCAATCTTGAAAAAACAGGG 419 ******************** ***** *** ** ****** *** ******** **** consensus_5823#0 TGCTGTCGGTGGCCAAGGCGGAGGAGGAACAACTTTACAAGCAGATAGCCCCGCTAGACC 479 consensus_5823#1 TGCTGTCGGGGGCCAAGGCGGAGGAAGACAACCTCTACGAACAGATAGCCGGGCTAGACC 479 ********* *************** ** * ** *** * ********* ******** consensus_5823#0 GCTCTAACCCGGACGACATCGAGGCGCTCCGCGAGCGCCGGATCCT 525 consensus_5823#1 GCCTAGACGCGGATTATTTCGAGGCGCTCCGCCAGCGCCCGATT-- 523 ** ** **** * ************** ****** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||