cluster # 5827

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5827 cluster # 5827 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5827#0 length = 537 sequences # 2

consensus_5827#1 length = 440 sequences # 1

consensusID : consensus_5827#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 537
fasta sequence

                              [CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATACGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTTCCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTTCGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCNNCAGAGGATATGATCGACTTTGCCGTGGCGATGTTAGGTGATGACATTGTGGTTCGCAGTACGGTATTGCCAAATGGGTCCGGCGAGTCAATCATGATTGGTNNNNTCAAGGGAATAAATAGTGGCAAGATTACCAGCTCGGTATCATGCCACGAATACTTATTTCCATANNTNGTATACTCCTGCCACTCGNT]

[+] EMBL CF195804             [CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATACGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTTCCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTTCGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCNNCAGAGGATATGATCGACTTTGCCGTGGCGATGTTAGGTGATGACATTGTGGTTCGCAGTACGGTATTGCCAAATGGGTCCGGCGAGTCAATCATGATTGGTNNNNTCAAGGGAATAAATAGTGGCAAGATTACCAGCTCGGTATCATGCCACGAATACTTATTTCCATANNTNGTATACTCCTGCCACTCGNT]
[+] EMBL CF195822             [CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATACGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTTCCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTTCGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCNNNAGANNATATGATCGACTTTGCCGTNGCGATGTTAGGTGATGACATTGTGGNNNNNAGTACNNNNTNGCCAAATGGGn                                                                                                                   ]




>consensus_5827#0
CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATA
CGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAA
AGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTT
CCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTT
CGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCA
GAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCNNCAGAGGATATGATCGA
CTTTGCCGTGGCGATGTTAGGTGATGACATTGTGGTTCGCAGTACGGTATTGCCAAATGG
GTCCGGCGAGTCAATCATGATTGGTNNNNTCAAGGGAATAAATAGTGGCAAGATTACCAG
CTCGGTATCATGCCACGAATACTTATTTCCATANNTNGTATACTCCTGCCACTCGNT

consensusID : consensus_5827#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATACGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTTCCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTTCGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCAGCNNNNNATATGATCGACTTTGCCGTGGCGATGNNNNNTGATGACATTGTGNNNNNNNNNNCNGTATTGCCAAATGGGTCCNNCGNNNCAATCATGA]

[+] EMBL CF195683             [CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATACGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTTCCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTTCGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCAGCNNNNNATATGATCGACTTTGCCGTGGCGATGNNNNNTGATGACATTGTGNNNNNNNNNNCNGTATTGCCAAATGGGTCCNNCGNNNCAATCATGA]




>consensus_5827#1
CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATA
CGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAA
AGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTT
CCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTT
CGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCA
GAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCAGCNNNNNATATGATCGA
CTTTGCCGTGGCGATGNNNNNTGATGACATTGTGNNNNNNNNNNCNGTATTGCCAAATGG
GTCCNNCGNNNCAATCATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5827#0      CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATA 60
consensus_5827#1      CCTCTCAAACACTGTCTCCATTGACGGCTGCTCCTTTGGGTACACATGCACCTTTGAATA 60
                      ************************************************************

consensus_5827#0      CGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAA 120
consensus_5827#1      CGAACATGACAACTTCCCCACTTTAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAA 120
                      ************************************************************

consensus_5827#0      AGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTT 180
consensus_5827#1      AGAGGGGAATGTGGTCAGAATGCCAGATATAACGAATGAGTCGACGACGGCTCGTTCGTT 180
                      ************************************************************

consensus_5827#0      CCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTT 240
consensus_5827#1      CCTGCCCCGATCGATCGCCGATAGGATCCCATTTGAGGCTGAGGCTGTCAAGCCCCTTTT 240
                      ************************************************************

consensus_5827#0      CGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCA 300
consensus_5827#1      CGGGCTAGAACCAAACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCA 300
                      ************************************************************

consensus_5827#0      GAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCNNCAGAGGATATGATCGA 360
consensus_5827#1      GAGCTCGCCAAGCAAGGGTGAGACGAAGCGGTGCGTCACATCAGCNNNNNATATGATCGA 360
                      ******************************************  *     **********

consensus_5827#0      CTTTGCCGTGGCGATGTTAGGTGATGACATTGTGGTTCGCAGTACGGTATTGCCAAATGG 420
consensus_5827#1      CTTTGCCGTGGCGATGNNNNNTGATGACATTGTGNNNNNNNNNNCNGTATTGCCAAATGG 420
                      ****************     *************          * **************

consensus_5827#0      GTCCGGCGAGTCAATCATGATTGGTNNNNTCAAGGGAATAAATAGTGGCAAGATTACCAG 480
consensus_5827#1      GTCCNNCGNNNCAATCATGA---------------------------------------- 440
                      ****  **   *********                                        

consensus_5827#0      CTCGGTATCATGCCACGAATACTTATTTCCATANNTNGTATACTCCTGCCACTCGNT 537
consensus_5827#1      ---------------------------------------------------------