These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 433 fasta sequence [TAAATCCACCTGAGAAAATATGTCTGTGGAATCAATAATGTCGTGATGCAAAAATGCGCATGCAGTCATTTGTACTGTTCACGTTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGGGGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTCTACGCGGCGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGCGCTGGGCGCCGACCAGTTCGCCGGCGAGGGGCAGCCGCGGCGGCGGCGGCAGGGCGGCGGGTTCTTCAG-TTGCTACTTCGCGTTCCTGTACGCCTCCTACGCGACCGG-CGACACGGTCCTCGTCTACGTGCAGGACGGCGTCA-GCTGGGCCCTCGGC-TTCGGCGTCTGCGTCGCCAC] [+] EMBL AU181593 [TAAATCCACCTGAGAAAATATGTCTGTGGAATCAATAATGTCGTGATGCAAAAATGCGCATGCAGTCATTTGTACTGTTCACGTTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGGGGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTCTACGCGGCGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGCGCTGGGCGCCGACCAGTTCGCCGGCGAGGGGCAGCCGCGGCGGCGGCGGCAGGGCGGCGGGTTCTTCAG TTGCTACTTCGCGTTCCTGTACGCCTCCTACGCGACCGG CGACACGGTCCTCGTCTACGTGCAGGACGGCGTCA GCTGGGCCCTCGGC TTCGGCGTCTGCGTCGCCAC] [+] EMBL AU184880 [ GTCATTTGTACTGTTCACGTTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGGGGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTCTACGCGGCGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGCGCTGGGCGCCGACCAGTTCGCCGGCAAGGGGCAGCCGCGGNGGCGGCGGCAGGGCGGCGGGTTCTTAAGTTTGCTACTTCGCGNTCCTGTACGCCTCCTACGCGACCGGACGACACGGTCCTCGTCTACGTGCAGGACGGCGTCANGCTGGGCCCTCGGCTTTCGGC ] consensusID : consensus_5835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [GGGCGGACGCGTGGGGGGTTGGGGATGGCGATGAGCGCGACGAGCAGCAACCTCATCGTGTACCTGGTGCACAAGTACAACGTGAAGGCCATCCACGCCGCCCAGATCTCCAACGTCGTCCGCGGCTGCATGCAGCTCGCCCCCGTCCTCGCCGCCGCCCTCTCCGACGCCTTCTTCGGCCCCTATCCCATCGCCGTCGCCGGCCTCGTCTTCTCCCTCCTTTCATTTGTACTGTTCACGTTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGGGGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTNTACGCGGAGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGNGCTGGGCGCCGACCAGTT] [+] EMBL AU181300 [GGGCGGACGCGTGGGGGGTTGGGGATGGCGATGAGCGCGACGAGCAGCAACCTCATCGTGTACCTGGTGCACAAGTACAACGTGAAGGCCATCCACGCCGCCCAGATCTCCAACGTCGTCCGCGGCTGCATGCAGCTCGCCCCCGTCCTCGCCGCCGCCCTCTCCGACGCCTTCTTCGGCCCCTATCCCATCGCCGTCGCCGGCCTCGTCTTCTCCCTCCTTTCATTTGTACTGTTCACGTTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGGGGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTNTACGCGGAGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGNGCTGGGCGCCGACCAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5835#0 ------------------------------------------------------------ consensus_5835#1 GGGCGGACGCGTGGGGGGTTGGGGATGGCGATGAGCGCGACGAGCAGCAACCTCATCGTG 60 consensus_5835#0 ------------------------------------------------------------ consensus_5835#1 TACCTGGTGCACAAGTACAACGTGAAGGCCATCCACGCCGCCCAGATCTCCAACGTCGTC 120 consensus_5835#0 ----------------------------------TAAATCCACCTGAGAAAATAT--GTC 24 consensus_5835#1 CGCGGCTGCATGCAGCTCGCCCCCGTCCTCGCCGCCGCCCTCTCCGACGCCTTCTTCGGC 180 * * ** * * * * consensus_5835#0 TGTGGAATCAATAATGTCGT-GATGCAAAAATGCGCATGCAGTCATTTGTACTGTTCACG 83 consensus_5835#1 CCCTATCCCATCGCCGTCGCCGGCCTCGTCTTCTCCCTCCTTTCATTTGTACTGTTCACG 240 ** **** * * * * * ****************** consensus_5835#0 TTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGG 143 consensus_5835#1 TTGACGGCCGCGCTCCCGTCGCTACTCCCGCCGCCGTGCCAGCGTGGCGCCGGCGGCGGG 300 ************************************************************ consensus_5835#0 GGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTCTACGCG 203 consensus_5835#1 GGCGCCACCGCGACGTCGTGCGAACCGCCGAACGCCGCGCAATCCGCCGTCCTNTACGCG 360 ***************************************************** ****** consensus_5835#0 GCGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGCGCTGGGC 263 consensus_5835#1 GAGCTGTGCCTCCTGGCCGCGGGCAACGGCGGCACGCGGTACAACATGGCGGNGCTGGGC 420 * ************************************************** ******* consensus_5835#0 GCCGACCAGTTCGCCGGCGAGGGGCAGCCGCGGCGGCGGCGGCAGGGCGGCGGGTTCTTC 323 consensus_5835#1 GCCGACCAGTT------------------------------------------------- 431 *********** consensus_5835#0 AGTTGCTACTTCGCGTTCCTGTACGCCTCCTACGCGACCGGCGACACGGTCCTCGTCTAC 383 consensus_5835#1 ------------------------------------------------------------ consensus_5835#0 GTGCAGGACGGCGTCAGCTGGGCCCTCGGCTTCGGCGTCTGCGTCGCCAC 433 consensus_5835#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||