cluster # 5838

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5838 cluster # 5838 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5838#0 length = 3032 sequences # 1

consensus_5838#1 length = 2911 sequences # 1
consensus_5838#2 length = 527 sequences # 1

consensusID : consensus_5838#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 3032
fasta sequence

                              [CCCCTCTGCCCCATCGATCACCAGTTCGCCGGCGGCTGCCTTCCTCTTCCCCGACCTGCGTTCTTCCCCACCCACCACCTGTGATTGTAGGGTTGCCCCGTGGTGGTTGCCGCTGATTATAGTCGTCGTCCAGCTATCTCCATCGGTCAGGCTGTCAGCGCGCTGGCCGTACCCAACAAGGCTCCCGATTGTTGCCCTGGTCGAGCGGCTGCCATCTGCCAGCCCGTCTGCTCTGGACGGCTGCCTCCATCCTCGGTTTTCTTCATTTGAATGATGTCAGCCTCTTCTGGGCCATCAACACCTAAACCAGCTCGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAGGTTAGCTCCAAGCCATATAAATTTTTATTTCTACATTTGAAACCATTTTCCTATTGAGCTCTCCTATTTGTCAACAAATGATTCTGTTGTGCCATATCTATTTCCTGGGGAATATTCCTAGCGATGGCGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTGGTGATTTCCCTACAAGTTTTCATTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTGCTCAGTCTGCTGGATTTCCCCACCCGGATCCTATAACAGCTGCTCAATCATGTCGAAAGCGTAAGCTCTCTATGGCTGCCAAATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGTGCTACAACGGAATGTTCGACAACGAACCAGTCTATCTCAGTCATCCACCTTGGTTCCTATCAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGACCATTTGCTCATCAATTATCGTGGTTTTGCTGATGTGAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATGCTCGACCTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCCATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGAACAGCACAGCTCATCACCAATATACAATACATGCTGTAAAGGTGGGATTGTCATCTTACCTCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATTGTCAGCCCATTTTTTTGAGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGATGGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAGTGGCCAGCTCTGCCACTGCATTGGGTCACTCATACCAAAAGAAGGAAGACGACCAGAGTATGCTCAGTTATATATCTTTGACACAGAAAATGAGATTAGGAATAGGATGAATGTTGGAACCTATGCAAATAGGAGTTTTTGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTTCAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAATGGTGATGATCGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATTTAGTGCTCCAGTTGCATCAGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGATGTTGGCCATGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAAGCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTATCATGAAAATATCACATACCGACGTTGTGCTCGATCACAAGCTATCAAAAGAAAGAAGGCTACTATGGTTGAATACTTTGCATATAGGCTTCATGACAGAGCTGATGACTTCAATACTCCTATGCGCTGCAAGAGAGGAACCTAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGAATCTCGCCTGAGTCACTGCAGATCCAAGACATTTCAGCTTAAGTATAGAACAGCTTCATTCAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCGAGTTATATTGCCTTCTTCTTATATTGGGGGGCCAAGATATTTATATCAAAATTACTTAGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATCAAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGCAGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTACACCTCTTCATGGACGACATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCAGAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCGTTGACACCTGCTGATATTGACAGACTAATATCGGCACAGCTTCCAGATCCATCCATTGATCGAGTTGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCATTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTCTGAGAAAACAACAATCCTGCCAAATGGCCATGTAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCCAAAAATAGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACATCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTAGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTAAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTACTTCAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTCTCCATGTACATATGCCATTAGAGAATAATGTTACATTCACAGAGGAT]

[+] EMBL AK070196             [CCCCTCTGCCCCATCGATCACCAGTTCGCCGGCGGCTGCCTTCCTCTTCCCCGACCTGCGTTCTTCCCCACCCACCACCTGTGATTGTAGGGTTGCCCCGTGGTGGTTGCCGCTGATTATAGTCGTCGTCCAGCTATCTCCATCGGTCAGGCTGTCAGCGCGCTGGCCGTACCCAACAAGGCTCCCGATTGTTGCCCTGGTCGAGCGGCTGCCATCTGCCAGCCCGTCTGCTCTGGACGGCTGCCTCCATCCTCGGTTTTCTTCATTTGAATGATGTCAGCCTCTTCTGGGCCATCAACACCTAAACCAGCTCGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAGGTTAGCTCCAAGCCATATAAATTTTTATTTCTACATTTGAAACCATTTTCCTATTGAGCTCTCCTATTTGTCAACAAATGATTCTGTTGTGCCATATCTATTTCCTGGGGAATATTCCTAGCGATGGCGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTGGTGATTTCCCTACAAGTTTTCATTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTGCTCAGTCTGCTGGATTTCCCCACCCGGATCCTATAACAGCTGCTCAATCATGTCGAAAGCGTAAGCTCTCTATGGCTGCCAAATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGTGCTACAACGGAATGTTCGACAACGAACCAGTCTATCTCAGTCATCCACCTTGGTTCCTATCAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGACCATTTGCTCATCAATTATCGTGGTTTTGCTGATGTGAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATGCTCGACCTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCCATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGAACAGCACAGCTCATCACCAATATACAATACATGCTGTAAAGGTGGGATTGTCATCTTACCTCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATTGTCAGCCCATTTTTTTGAGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGATGGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAGTGGCCAGCTCTGCCACTGCATTGGGTCACTCATACCAAAAGAAGGAAGACGACCAGAGTATGCTCAGTTATATATCTTTGACACAGAAAATGAGATTAGGAATAGGATGAATGTTGGAACCTATGCAAATAGGAGTTTTTGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTTCAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAATGGTGATGATCGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATTTAGTGCTCCAGTTGCATCAGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGATGTTGGCCATGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAAGCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTATCATGAAAATATCACATACCGACGTTGTGCTCGATCACAAGCTATCAAAAGAAAGAAGGCTACTATGGTTGAATACTTTGCATATAGGCTTCATGACAGAGCTGATGACTTCAATACTCCTATGCGCTGCAAGAGAGGAACCTAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGAATCTCGCCTGAGTCACTGCAGATCCAAGACATTTCAGCTTAAGTATAGAACAGCTTCATTCAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCGAGTTATATTGCCTTCTTCTTATATTGGGGGGCCAAGATATTTATATCAAAATTACTTAGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATCAAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGCAGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTACACCTCTTCATGGACGACATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCAGAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCGTTGACACCTGCTGATATTGACAGACTAATATCGGCACAGCTTCCAGATCCATCCATTGATCGAGTTGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCATTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTCTGAGAAAACAACAATCCTGCCAAATGGCCATGTAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCCAAAAATAGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACATCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTAGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTAAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTACTTCAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTCTCCATGTACATATGCCATTAGAGAATAATGTTACATTCACAGAGGAT]




>consensus_5838#0
CCCCTCTGCCCCATCGATCACCAGTTCGCCGGCGGCTGCCTTCCTCTTCCCCGACCTGCG
TTCTTCCCCACCCACCACCTGTGATTGTAGGGTTGCCCCGTGGTGGTTGCCGCTGATTAT
AGTCGTCGTCCAGCTATCTCCATCGGTCAGGCTGTCAGCGCGCTGGCCGTACCCAACAAG
GCTCCCGATTGTTGCCCTGGTCGAGCGGCTGCCATCTGCCAGCCCGTCTGCTCTGGACGG
CTGCCTCCATCCTCGGTTTTCTTCATTTGAATGATGTCAGCCTCTTCTGGGCCATCAACA
CCTAAACCAGCTCGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAGGTTAGCTC
CAAGCCATATAAATTTTTATTTCTACATTTGAAACCATTTTCCTATTGAGCTCTCCTATT
TGTCAACAAATGATTCTGTTGTGCCATATCTATTTCCTGGGGAATATTCCTAGCGATGGC
GTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTGGTGATTTCCCTACAAGTTTTCAT
TTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTGCTCAGTCTGCTGGATTTCCCCAC
CCGGATCCTATAACAGCTGCTCAATCATGTCGAAAGCGTAAGCTCTCTATGGCTGCCAAA
TCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGTG
CTACAACGGAATGTTCGACAACGAACCAGTCTATCTCAGTCATCCACCTTGGTTCCTATC
AATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGACCATTTGCTCATCAATTAT
CGTGGTTTTGCTGATGTGAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTA
TGATGCTCGACCTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGG
CCCCCATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGC
CGAGAACAGCACAGCTCATCACCAATATACAATACATGCTGTAAAGGTGGGATTGTCATC
TTACCTCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGA
TCATTGTCAGCCCATTTTTTTGAGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACA
TCGATGGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAG
ATTAGTGGCCAGCTCTGCCACTGCATTGGGTCACTCATACCAAAAGAAGGAAGACGACCA
GAGTATGCTCAGTTATATATCTTTGACACAGAAAATGAGATTAGGAATAGGATGAATGTT
GGAACCTATGCAAATAGGAGTTTTTGTCCTAATGAGGATATTGTGGCTGGACTTATAGAC
ATGTTCAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCT
GAAAATGGTGATGATCGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGAT
ATATTTAGTGCTCCAGTTGCATCAGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATA
AGTGATGTTGGCCATGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAA
GAAAAGCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGAT
GGCTATCATGAAAATATCACATACCGACGTTGTGCTCGATCACAAGCTATCAAAAGAAAG
AAGGCTACTATGGTTGAATACTTTGCATATAGGCTTCATGACAGAGCTGATGACTTCAAT
ACTCCTATGCGCTGCAAGAGAGGAACCTAGGCCTATGTCATAGATGCCTATTGTTGTATG
GAAGAATCTCGCCTGAGTCACTGCAGATCCAAGACATTTCAGCTTAAGTATAGAACAGCT
TCATTCAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGG
CAGCGAGTTATATTGCCTTCTTCTTATATTGGGGGGCCAAGATATTTATATCAAAATTAC
TTAGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACA
TCAAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCA
GCAGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTACACCTCTTCATGGAC
GACATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTT
CAGAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCGTTG
ACACCTGCTGATATTGACAGACTAATATCGGCACAGCTTCCAGATCCATCCATTGATCGA
GTTGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCG
CATTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTCTGAG
AAAACAACAATCCTGCCAAATGGCCATGTAAGGTATGCTCGGCCAAAAAATGATATAATT
GTTGCCAAAAATAGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACATCGATTTA
TTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAG
TATCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTAGTCTCAAGCGCAAG
CGGGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCG
AATGAGGCGGCATGGCGTTTAAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTT
TACTTCAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTCTCCATGTACATATGC
CATTAGAGAATAATGTTACATTCACAGAGGAT

consensusID : consensus_5838#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2911
fasta sequence

                              [TTTTTTCTCTATACTGCTCTTTGTTGCTGTTGGATGCCAATCTTGCTTTCTTTCAGTTTGAGTCACCGAGACAATGCCCAGGCTGATCAATCTTTGCTGTTGTTAACAGCCAAAACATGAATCTATTTCCCTATGCTTCCTTGCGATAGTTAGGCTGAGTGAATACTACCAAGTTTGAATGATGTCAGTCTCTTCTGGGCCATCAACACCTAAACCAGCTTGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAGATGATTCTGTTGTGCCATATCTATTTCCTAGGGAATATTCCTAGCGATGGCGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTTGTGATTTCCCTACAAGTTTTCATTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTACTCAGTCTGCTGGATTTCCCCACCCGGATCCTGTAACAGCTGCTCAATCACGTCGAAAGCGTAAGCTTGCTATGGCTGCCAAATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGTGCTACAACGGAATGTTCGACAACGAACCGGTCTGTCTCAGTCATCCACCTTGGTTCCTATCAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGCATGTTCATCGTCGACCTCTTCAGCCCTATTGTCTCCATCTCCCACACATCAACACCATTTGCTCATCAATTCTCGCGGTTTTGCTGATGTAAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATGCTCGACTTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCCATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGAACAGCACAGCTCATCACCAATATACAATACATGTTGTAAAGGTGGGAGTGTCATCTTACCTCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATTGTCAGCCCATTTTTTTAGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGATGGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAGTGGCCAGCTCTGCCATCGCATTGGGTCACTCATACCAGAAGAAGGAAGACGACCAGAGTATGCTCACTTATATATCTTTGACACAGAAAATGAGATCAGGAATAGGATAAATGTTGGAACCTATGCAAATAGGAGTTTTCGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTTCAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAATGGTGATGATTGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATTTAGTGCTCCAGTTGCATCGGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGATGTTGGCCGTGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAAGCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTATCATGAAAATATCACATACCGACGTTGTGCTCGATTACAAGCTATCAAAAGAAAGAAGTCTACTATGGTTGAATACTTTGCATATAGGCTTCATGACAAAGCTGATGACTTCAATACTCCTATGCGCTGCAAGAGAGGAACCCAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGAATCTCGCCTGAGTCACTATAGATCCAAGACATTTCAGCTTAAGTATAGAACAACTTCATTTAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCAAGTTATATTGCCTTCTTCTTATATTGGGGGGGGGGCAAGATATTTATATCAAAATTACTTAGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATCAAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGCAGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTGCATCTCTTCATGGACGACATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCAGAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCATTGACACCTGCTGATATTGACAGACTAATATCGGCCCAGCTTCCAGATCCATCCATTGATCGAGTTGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCATTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTATGAGAAAACAACAATCCTGCCAAATGGCCGTGTAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCGAAAAATGGAATTTCTCTTGATAATTGGCATGTTGTCCCCCACAACGTCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTGCTTTAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTCCATGTACATATGCCATTAGAGAATAATGTTACATTCACAGAGGATGATAATCTGGAACAGATCTTGGATAACCCACGCAA]

[+] EMBL AK120244             [TTTTTTCTCTATACTGCTCTTTGTTGCTGTTGGATGCCAATCTTGCTTTCTTTCAGTTTGAGTCACCGAGACAATGCCCAGGCTGATCAATCTTTGCTGTTGTTAACAGCCAAAACATGAATCTATTTCCCTATGCTTCCTTGCGATAGTTAGGCTGAGTGAATACTACCAAGTTTGAATGATGTCAGTCTCTTCTGGGCCATCAACACCTAAACCAGCTTGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAGATGATTCTGTTGTGCCATATCTATTTCCTAGGGAATATTCCTAGCGATGGCGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTTGTGATTTCCCTACAAGTTTTCATTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTACTCAGTCTGCTGGATTTCCCCACCCGGATCCTGTAACAGCTGCTCAATCACGTCGAAAGCGTAAGCTTGCTATGGCTGCCAAATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGTGCTACAACGGAATGTTCGACAACGAACCGGTCTGTCTCAGTCATCCACCTTGGTTCCTATCAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGCATGTTCATCGTCGACCTCTTCAGCCCTATTGTCTCCATCTCCCACACATCAACACCATTTGCTCATCAATTCTCGCGGTTTTGCTGATGTAAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATGCTCGACTTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCCATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGAACAGCACAGCTCATCACCAATATACAATACATGTTGTAAAGGTGGGAGTGTCATCTTACCTCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATTGTCAGCCCATTTTTTTAGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGATGGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAGTGGCCAGCTCTGCCATCGCATTGGGTCACTCATACCAGAAGAAGGAAGACGACCAGAGTATGCTCACTTATATATCTTTGACACAGAAAATGAGATCAGGAATAGGATAAATGTTGGAACCTATGCAAATAGGAGTTTTCGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTTCAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAATGGTGATGATTGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATTTAGTGCTCCAGTTGCATCGGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGATGTTGGCCGTGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAAGCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTATCATGAAAATATCACATACCGACGTTGTGCTCGATTACAAGCTATCAAAAGAAAGAAGTCTACTATGGTTGAATACTTTGCATATAGGCTTCATGACAAAGCTGATGACTTCAATACTCCTATGCGCTGCAAGAGAGGAACCCAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGAATCTCGCCTGAGTCACTATAGATCCAAGACATTTCAGCTTAAGTATAGAACAACTTCATTTAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCAAGTTATATTGCCTTCTTCTTATATTGGGGGGGGGGCAAGATATTTATATCAAAATTACTTAGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATCAAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGCAGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTGCATCTCTTCATGGACGACATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCAGAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCATTGACACCTGCTGATATTGACAGACTAATATCGGCCCAGCTTCCAGATCCATCCATTGATCGAGTTGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCATTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTATGAGAAAACAACAATCCTGCCAAATGGCCGTGTAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCGAAAAATGGAATTTCTCTTGATAATTGGCATGTTGTCCCCCACAACGTCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTGCTTTAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTCCATGTACATATGCCATTAGAGAATAATGTTACATTCACAGAGGATGATAATCTGGAACAGATCTTGGATAACCCACGCAA]




>consensus_5838#1
TTTTTTCTCTATACTGCTCTTTGTTGCTGTTGGATGCCAATCTTGCTTTCTTTCAGTTTG
AGTCACCGAGACAATGCCCAGGCTGATCAATCTTTGCTGTTGTTAACAGCCAAAACATGA
ATCTATTTCCCTATGCTTCCTTGCGATAGTTAGGCTGAGTGAATACTACCAAGTTTGAAT
GATGTCAGTCTCTTCTGGGCCATCAACACCTAAACCAGCTTGCAAGCGCAGGCAACCCGA
GAGAGCTTTTATACCTTCAGATGATTCTGTTGTGCCATATCTATTTCCTAGGGAATATTC
CTAGCGATGGCGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTTGTGATTTCCCTA
CAAGTTTTCATTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTACTCAGTCTGCTG
GATTTCCCCACCCGGATCCTGTAACAGCTGCTCAATCACGTCGAAAGCGTAAGCTTGCTA
TGGCTGCCAAATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGC
ATATCCATGTGCTACAACGGAATGTTCGACAACGAACCGGTCTGTCTCAGTCATCCACCT
TGGTTCCTATCAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGCATGTTCAT
CGTCGACCTCTTCAGCCCTATTGTCTCCATCTCCCACACATCAACACCATTTGCTCATCA
ATTCTCGCGGTTTTGCTGATGTAAACCTGATGCTCGACATGTCAAATCAGATCACTCATA
CAGTATGATGCTCGACTTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGC
TTGGGCCCCCATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTG
TCCGCCGAGAACAGCACAGCTCATCACCAATATACAATACATGTTGTAAAGGTGGGAGTG
TCATCTTACCTCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTA
ACAGATCATTGTCAGCCCATTTTTTTAGAACATTAGGTTCTACAATTCGATGTTTGCCTT
CACATCGATGGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTT
CAAGATTAGTGGCCAGCTCTGCCATCGCATTGGGTCACTCATACCAGAAGAAGGAAGACG
ACCAGAGTATGCTCACTTATATATCTTTGACACAGAAAATGAGATCAGGAATAGGATAAA
TGTTGGAACCTATGCAAATAGGAGTTTTCGTCCTAATGAGGATATTGTGGCTGGACTTAT
AGACATGTTCAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATT
GGCTGAAAATGGTGATGATTGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGG
TGATATATTTAGTGCTCCAGTTGCATCGGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGG
TATAAGTGATGTTGGCCGTGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGT
TGAAGAAAAGCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGA
GGATGGCTATCATGAAAATATCACATACCGACGTTGTGCTCGATTACAAGCTATCAAAAG
AAAGAAGTCTACTATGGTTGAATACTTTGCATATAGGCTTCATGACAAAGCTGATGACTT
CAATACTCCTATGCGCTGCAAGAGAGGAACCCAGGCCTATGTCATAGATGCCTATTGTTG
TATGGAAGAATCTCGCCTGAGTCACTATAGATCCAAGACATTTCAGCTTAAGTATAGAAC
AACTTCATTTAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGC
CGGGCAGCAAGTTATATTGCCTTCTTCTTATATTGGGGGGGGGGCAAGATATTTATATCA
AAATTACTTAGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCAC
TTTCACATCAAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCA
ACACTCAGCAGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTGCATCTCTT
CATGGACGACATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAAT
TGAATTTCAGAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGG
TCCATTGACACCTGCTGATATTGACAGACTAATATCGGCCCAGCTTCCAGATCCATCCAT
TGATCGAGTTGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGC
AAATCCGCATTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATA
TTATGAGAAAACAACAATCCTGCCAAATGGCCGTGTAAGGTATGCTCGGCCAAAAAATGA
TATAATTGTTGCGAAAAATGGAATTTCTCTTGATAATTGGCATGTTGTCCCCCACAACGT
CGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAAT
GGAAAAGTATCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAA
GCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTAT
AGCGCCGAATGAGGCGGCATGGCGTTTGCTTTAGTTTGAGATTCATTATACTGATCCTGC
TATTGAGCGTCCATGTACATATGCCATTAGAGAATAATGTTACATTCACAGAGGATGATA
ATCTGGAACAGATCTTGGATAACCCACGCAA

consensusID : consensus_5838#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [TCCGCATTGTTCATGCATAGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTGTGAGAAAACAACAATCCTGCCAAATGGCCATATAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCCAAAAATGGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACGTCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCCCATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGATTATTTAGAATGTAGATGTATAGCGTAGAATGAGTAGGAATGAAGTTTGATTTAGTAGATGCCCCCCCTCTCCGAGTAAAAGTGGAAAGGGAGTCTAGAATAGGGGGGAATCTACTGGTATAAGGGCGAAAAGCCGGCGGCGGTGTTGCCCCCGATTATTGTACATTTAAACATACTTACACGCTTGTTTA]

[-] EMBL BE040288             [TCCGCATTGTTCATGCATAGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTGTGAGAAAACAACAATCCTGCCAAATGGCCATATAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCCAAAAATGGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACGTCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCCCATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGATTATTTAGAATGTAGATGTATAGCGTAGAATGAGTAGGAATGAAGTTTGATTTAGTAGATGCCCCCCCTCTCCGAGTAAAAGTGGAAAGGGAGTCTAGAATAGGGGGGAATCTACTGGTATAAGGGCGAAAAGCCGGCGGCGGTGTTGCCCCCGATTATTGTACATTTAAACATACTTACACGCTTGTTTA]




>consensus_5838#2
TCCGCATTGTTCATGCATAGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTG
TGAGAAAACAACAATCCTGCCAAATGGCCATATAAGGTATGCTCGGCCAAAAAATGATAT
AATTGTTGCCAAAAATGGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACGTCGA
TTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGA
AAAGTATCTATTCCCATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCG
CAAGCGGGCATGTGCTGGAACTAATGAGATTCATGATTATTTAGAATGTAGATGTATAGC
GTAGAATGAGTAGGAATGAAGTTTGATTTAGTAGATGCCCCCCCTCTCCGAGTAAAAGTG
GAAAGGGAGTCTAGAATAGGGGGGAATCTACTGGTATAAGGGCGAAAAGCCGGCGGCGGT
GTTGCCCCCGATTATTGTACATTTAAACATACTTACACGCTTGTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5838#0      CCCCTCTGCCCCATCGATCACCAGTTCGCCGGCGGCTGCCTTCCTCTTCCCCGACCTGCG 60
consensus_5838#1      ------------------------------------------------------------
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TTCTTCCCCACCCACCACCTGTGATTGTAGGGTTGCCCCGTGGTGGTTGCCGCTGATTAT 120
consensus_5838#1      -----------------------------TTTTTTCTCTATACTGCTCTTTGTTGCTGTT 31
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      AGTCGTCG-TCCAGCTATCTCCATCGGTCAGGCTGTCAGCGCGCTGGCCGTACCCAACAA 179
consensus_5838#1      GGATGCCAATCTTGCTTTCTTT-CAGTTTGAGTCACCGAGACAATGCCCAGGCTGATCAA 90
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      GGCTCCCGATTGTTGCCCTGGTCGAGCGGCTGCCATCTGCCAGCCCGTCTGCTCTGGACG 239
consensus_5838#1      TCTTTGCTGTTGTTAAC--AGCCAAAACATGAATCTATTTCCCTATGCTTCCTTGCGATA 148
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      GCTGCCTCCATCCTCGGTTTTCTTCATTTGAATGATGTCAGCCTCTTCTGGGCCATCAAC 299
consensus_5838#1      GTTAGGCTGAGTGAATACTACCAA-GTTTGAATGATGTCAGTCTCTTCTGGGCCATCAAC 207
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      ACCTAAACCAGCTCGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAGGTTAGCT 359
consensus_5838#1      ACCTAAACCAGCTTGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAG------- 260
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      CCAAGCCATATAAATTTTTATTTCTACATTTGAAACCATTTTCCTATTGAGCTCTCCTAT 419
consensus_5838#1      ------------------------------------------------------------
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TTGTCAACAAATGATTCTGTTGTGCCATATCTATTTCCTGGGGAATATTCCTAGCGATGG 479
consensus_5838#1      ----------ATGATTCTGTTGTGCCATATCTATTTCCTAGGGAATATTCCTAGCGATGG 310
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      CGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTGGTGATTTCCCTACAAGTTTTCA 539
consensus_5838#1      CGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTTGTGATTTCCCTACAAGTTTTCA 370
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTGCTCAGTCTGCTGGATTTCCCCA 599
consensus_5838#1      TTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTACTCAGTCTGCTGGATTTCCCCA 430
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      CCCGGATCCTATAACAGCTGCTCAATCATGTCGAAAGCGTAAGCTCTCTATGGCTGCCAA 659
consensus_5838#1      CCCGGATCCTGTAACAGCTGCTCAATCACGTCGAAAGCGTAAGCTTGCTATGGCTGCCAA 490
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      ATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGT 719
consensus_5838#1      ATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGT 550
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      GCTACAACGGAATGTTCGACAACGAACCAGTCTATCTCAGTCATCCACCTTGGTTCCTAT 779
consensus_5838#1      GCTACAACGGAATGTTCGACAACGAACCGGTCTGTCTCAGTCATCCACCTTGGTTCCTAT 610
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      CAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAG------------------- 820
consensus_5838#1      CAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGCATGTTCATCGTCGACCTC 670
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      -----------------------------------ACCATTTGCTCATCAATTATCGTGG 845
consensus_5838#1      TTCAGCCCTATTGTCTCCATCTCCCACACATCAACACCATTTGCTCATCAATTCTCGCGG 730
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TTTTGCTGATGTGAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATG 905
consensus_5838#1      TTTTGCTGATGTAAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATG 790
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      CTCGACCTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCC 965
consensus_5838#1      CTCGACTTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCC 850
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      ATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGA 1025
consensus_5838#1      ATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGA 910
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      ACAGCACAGCTCATCACCAATATACAATACATGCTGTAAAGGTGGGATTGTCATCTTACC 1085
consensus_5838#1      ACAGCACAGCTCATCACCAATATACAATACATGTTGTAAAGGTGGGAGTGTCATCTTACC 970
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATT 1145
consensus_5838#1      TCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATT 1030
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      GTCAGCCCATTTTTTTGAGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGAT 1205
consensus_5838#1      GTCAGCCCATTTTTTT-AGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGAT 1089
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      GGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAG 1265
consensus_5838#1      GGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAG 1149
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TGGCCAGCTCTGCCACTGCATTGGGTCACTCATACCAAAAGAAGGAAGACGACCAGAGTA 1325
consensus_5838#1      TGGCCAGCTCTGCCATCGCATTGGGTCACTCATACCAGAAGAAGGAAGACGACCAGAGTA 1209
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TGCTCAGTTATATATCTTTGACACAGAAAATGAGATTAGGAATAGGATGAATGTTGGAAC 1385
consensus_5838#1      TGCTCACTTATATATCTTTGACACAGAAAATGAGATCAGGAATAGGATAAATGTTGGAAC 1269
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      CTATGCAAATAGGAGTTTTTGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTT 1445
consensus_5838#1      CTATGCAAATAGGAGTTTTCGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTT 1329
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      CAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAA 1505
consensus_5838#1      CAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAA 1389
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TGGTGATGATCGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATT 1565
consensus_5838#1      TGGTGATGATTGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATT 1449
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TAGTGCTCCAGTTGCATCAGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGA 1625
consensus_5838#1      TAGTGCTCCAGTTGCATCGGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGA 1509
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TGTTGGCCATGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAA 1685
consensus_5838#1      TGTTGGCCGTGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAA 1569
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      GCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTA 1745
consensus_5838#1      GCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTA 1629
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TCATGAAAATATCACATACCGACGTTGTGCTCGATCACAAGCTATCAAAAGAAAGAAGGC 1805
consensus_5838#1      TCATGAAAATATCACATACCGACGTTGTGCTCGATTACAAGCTATCAAAAGAAAGAAGTC 1689
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TACTATGGTTGAATACTTTGCATATAGGCTTCATGACAGAGCTGATGACTTCAATACTCC 1865
consensus_5838#1      TACTATGGTTGAATACTTTGCATATAGGCTTCATGACAAAGCTGATGACTTCAATACTCC 1749
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TATGCGCTGCAAGAGAGGAACCTAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGA 1925
consensus_5838#1      TATGCGCTGCAAGAGAGGAACCCAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGA 1809
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      ATCTCGCCTGAGTCACTGCAGATCCAAGACATTTCAGCTTAAGTATAGAACAGCTTCATT 1985
consensus_5838#1      ATCTCGCCTGAGTCACTATAGATCCAAGACATTTCAGCTTAAGTATAGAACAACTTCATT 1869
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      CAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCG 2045
consensus_5838#1      TAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCA 1929
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      AGTTATATTGCCTTCTTCTTATATTGGGGGGC---CAAGATATTTATATCAAAATTACTT 2102
consensus_5838#1      AGTTATATTGCCTTCTTCTTATATTGGGGGGGGGGCAAGATATTTATATCAAAATTACTT 1989
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      AGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATC 2162
consensus_5838#1      AGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATC 2049
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      AAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGC 2222
consensus_5838#1      AAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGC 2109
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      AGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTACACCTCTTCATGGACGA 2282
consensus_5838#1      AGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTGCATCTCTTCATGGACGA 2169
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      CATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCA 2342
consensus_5838#1      CATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCA 2229
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      GAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCGTTGAC 2402
consensus_5838#1      GAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCATTGAC 2289
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      ACCTGCTGATATTGACAGACTAATATCGGCACAGCTTCCAGATCCATCCATTGATCGAGT 2462
consensus_5838#1      ACCTGCTGATATTGACAGACTAATATCGGCCCAGCTTCCAGATCCATCCATTGATCGAGT 2349
consensus_5838#2      ------------------------------------------------------------
                                                                                  

consensus_5838#0      TGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCA 2522
consensus_5838#1      TGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCA 2409
consensus_5838#2      ------------------------------------------------------TCCGCA 6
                                                                            ******

consensus_5838#0      TTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTCTGAGAA 2582
consensus_5838#1      TTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTATGAGAA 2469
consensus_5838#2      TTGTTCATGCATAGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTGTGAGAA 66
                      ************ **************************************** ******

consensus_5838#0      AACAACAATCCTGCCAAATGGCCATGTAAGGTATGCTCGGCCAAAAAATGATATAATTGT 2642
consensus_5838#1      AACAACAATCCTGCCAAATGGCCGTGTAAGGTATGCTCGGCCAAAAAATGATATAATTGT 2529
consensus_5838#2      AACAACAATCCTGCCAAATGGCCATATAAGGTATGCTCGGCCAAAAAATGATATAATTGT 126
                      *********************** * **********************************

consensus_5838#0      TGCCAAAAATAGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACATCGATTTATT 2702
consensus_5838#1      TGCGAAAAATGGAATTTCTCTTGATAATTGGCATGTTGTCCCCCACAACGTCGATTTATT 2589
consensus_5838#2      TGCCAAAAATGGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACGTCGATTTATT 186
                      *** ****** ***************** ******************** **********

consensus_5838#0      AGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTA 2762
consensus_5838#1      AGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTA 2649
consensus_5838#2      AGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTA 246
                      ************************************************************

consensus_5838#0      TCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTAGTCTCAAGCGCAAGCG 2822
consensus_5838#1      TCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCG 2709
consensus_5838#2      TCTATTCCCATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCG 306
                      *******  ********************************** ****************

consensus_5838#0      GGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAA 2882
consensus_5838#1      GGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAA 2769
consensus_5838#2      GGCATGTGCTGGAACTAATGAGATTCATGATTATTTAGAATGTAGATGTATAGCGTAGAA 366
                      ****************************** ************************  ***

consensus_5838#0      TGAGGCGGCATGGCGTTTAAAT--GTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTT 2940
consensus_5838#1      TGAGGCGGCATGGC-------------------------------------------GTT 2786
consensus_5838#2      TGAGTAGGAATGAAGTTTGATTTAGTAGATGCCCCCCCTCTCCGAGTAAAAGTGGAAAGG 426
                      ****  ** ***                                                

consensus_5838#0      TACTTCAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTCTCCATGTACATATGC 3000
consensus_5838#1      TGCTTTAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTC--CATGTACATATGC 2844
consensus_5838#2      GAGTCTAGAATAGGGGGGAATCTACTGGTATAAGGGCGAAAAGCC----GGCGGCGGTGT 482
                         *  **  *  *    * * ***** *          *  * *     *      ** 

consensus_5838#0      CATTAGAGAATAATGTTACATTCACAGAGGAT---------------------------- 3032
consensus_5838#1      CATTAGAGAATAATGTTACATTCACAGAGGATGATAATCTGGAACAGATCTTGGATAACC 2904
consensus_5838#2      TGCCCCCGATTATTGT-ACATTTAAACATACTTACACGCTTGTTTA-------------- 527
                             ** ** *** ***** * * *   *                            

consensus_5838#0      -------
consensus_5838#1      CACGCAA 2911
consensus_5838#2      -------