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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence
[CNTGCCAAAATGGTTACATTTACGGTATCCCGCCCTTCTACAGTCCCCTTTTTGGACACAGAAAATNCCAAAGGGAAGACAAGAAAGTNCCTTGTTGATGGAAGATGGACCCTTGCTTTTAGAGATGAGCAATCATGTAAGGAAGCAGAGACTATGGTTATAGAGGAGATGAAGCTCCAACAAGGTGCTNTTGGAGAACAGTTGAAGCTATTGCTTGAATTTGACATGCCTGAGGATGGATTACAGCATCCTTGCTCCTCTCATGAAACCACTTCGGATGATGGGTCATGACTTGCTAGAACATCATCGATGATCGCTCATGCCTTACTGGAGGTTTCATCATGTGCAGTGTTCGAGCTTTGAAAACATGGTGGCAGGAAAACCCCGTCGCTGCCATCTCCGACGAGCAAGTCGGTCACGCTCTGTACATTACATCGGCAGATTTAGGGAGGTCCCCTTGTTGACACACTGTAGAGTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACAATAGTTTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGGGCAGAGTTGGGCTGTGTACACTAATTGTTTGAAGAAATGTGCAGGCAATCATATCTGTTGTCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU093850 [CNTGCCAAAATGGTTACATTTACGGTATCCCGCCCTTCTACAGTCCCCTTTTTGGACACAGAAAATNCCAAAGGGAAGACAAGAAAGTNCCTTGTTGATGGAAGATGGACCCTTGCTTTTAGAGATGAGCAATCATGTAAGGAAGCAGAGACTATGGTTATAGAGGAGATGAAGCTCCAACAAGGTGCTNTTGGAGAACAGTTGAAGCTATTGCTTGAATTTGACATGCCTGAGGATGGATTACAGCATCCTTGCTCCTCTCATGAAACCACTTCGGATGATGGGTCATGACTTGCTAGAACATCATCGATGATCGCTCATGCCTTACTGGAGGTTTCATCATGTGCAGTGTTCGAGCTTTGAAAACATGGTGGCAGGAAAACCCCGTCGCTGCCATCTCCGACGAGCAAGTCGGTCACGCTCTGTACATTACATCGGCAGATTTAGGGAGGTCCCCTTGTTGACACACTGTAGAGTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACAATAGTTTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGGGCAGAGTTGGGCTGTGTACACTAATTGTTTGAAGAAATGTGCAGGCAATCATATCTGTTGTCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA882899 [ TCGGCAGATTTAGGGAGGTCCCCTTGTTGACACACTGTAGAGTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAG ]
consensusID : consensus_5839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[ATCGCTCATCGCCTTACTGGAGGTTTCATCATGTCCAGTGTTCGAGCTTTTGAAAACCTGGTGCCAGGAAACCCCGTCGCGTGCCATTTCCGACGAGCACAGTCGGTCACCTCTCTGTACCTTACATCGGCAGATTTAGGGAGGTCCCCTTGTGGACACACTGTAGAGTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACCATAGTTTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGGCAGAGTTGGGCTGTGTACACCTAATTGTTTGAAGAAATGTCAGGCAATCATATCTGTTGTCAAAAGGATGCCCTGACTATAGTAATAAAATATGAATTTTGAGCTCCCAAAAAAAAAA]
[+] EMBL BI807975 [ATCGCTCATCGCCTTACTGGAGGTTTCATCATGTCCAGTGTTCGAGCTTTTGAAAACCTGGTGCCAGGAAACCCCGTCGCGTGCCATTTCCGACGAGCACAGTCGGTCACCTCTCTGTACCTTACATCGGCAGATTTAGGGAGGTCCCCTTGTGGACACACTGTAGAGTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACCATAGTTTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGGCAGAGTTGGGCTGTGTACACCTAATTGTTTGAAGAAATGTCAGGCAATCATATCTGTTGTCAAAAGGATGCCCTGACTATAGTAATAAAATATGAATTTTGAGCTCCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5839#0 CNTGCCAAAATGGTTACATTTACGGTATCCCGCCCTTCTACAGTCCCCTTTTTGGACACA 60
consensus_5839#1 ------------------------------------------------------------
consensus_5839#0 GAAAATNCCAAAGGGAAGACAAGAAAGTNCCTTGTTGATGGAAGATGGACCCTTGCTTTT 120
consensus_5839#1 ------------------------------------------------------------
consensus_5839#0 AGAGATGAGCAATCATGTAAGGAAGCAGAGACTATGGTTATAGAGGAGATGAAGCTCCAA 180
consensus_5839#1 ------------------------------------------------------------
consensus_5839#0 CAAGGTGCTNTTGGAGAACAGTTGAAGCTATTGCTTGAATTTGACATGCCTGAGGATGGA 240
consensus_5839#1 ------------------------------------------------------------
consensus_5839#0 TTACAGCATCCTTGCTCCTCTCATGAAACCACTTCGGATGATGGGTCATGACTTGCTAGA 300
consensus_5839#1 ------------------------------------------------------------
consensus_5839#0 ACATCATCGATGATCGCTCAT-GCCTTACTGGAGGTTTCATCATGTGCAGTGTTCGAGCT 359
consensus_5839#1 ------------ATCGCTCATCGCCTTACTGGAGGTTTCATCATGTCCAGTGTTCGAGCT 48
********* ************************ *************
consensus_5839#0 TT-GAAAACATGGTGGCAGGAAAACCCCGTCGC-TGCCATCTCCGACGAGCA-AGTCGGT 416
consensus_5839#1 TTTGAAAACCTGGTGCCAGGAAA-CCCCGTCGCGTGCCATTTCCGACGAGCACAGTCGGT 107
** ****** ***** ******* ********* ****** *********** *******
consensus_5839#0 CACG-CTCTGTACATTACATCGGCAGATTTAGGGAGGTCCCCTTGTTGACACACTGTAGA 475
consensus_5839#1 CACCTCTCTGTACCTTACATCGGCAGATTTAGGGAGGTCCCCTTGTGGACACACTGTAGA 167
*** ******** ******************************** *************
consensus_5839#0 GTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACAATAGT 535
consensus_5839#1 GTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACCATAGT 227
****************************************************** *****
consensus_5839#0 TTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGGG 595
consensus_5839#1 TTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGG- 286
***********************************************************
consensus_5839#0 CAGAGTTGGGCTGTGTACAC-TAATTGTTTGAAGAAATGTGCAGGCAATCATATCTGTTG 654
consensus_5839#1 CAGAGTTGGGCTGTGTACACCTAATTGTTTGAAGAAATGT-CAGGCAATCATATCTGTTG 345
******************** ******************* *******************
consensus_5839#0 TCAAAAAAA------AAAAAAAAAAAAAAAA---------------------------- 679
consensus_5839#1 TCAAAAGGATGCCCTGACTATAGTAATAAAATATGAATTTTGAGCTCCCAAAAAAAAAA 404
****** * * * * ** ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||