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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1814 fasta sequence
[CCCGACGACGCCGCTTCCCCAATTCCGGCTCCGGCGGCGAGCAGCTGGCTGCGGACGCGCCGTCAAAACCCCAGGAGGATGTGGATCTCCGGTGTACTCTCCGCGGCATGCCGGCATCGGCGGCGCGAAGATTCTGCACCGGCTTAGATCGACGGCGCCCCTCGCCGCGGGGCTTTCGTGGAGAGCAGCCAATTGTCTGAAGATGTGAATATCAAGATTCCAAATGACTAGCGACAAGATCATGTATGTGCAGACGACCCCTGAGGCTGAACCAAACTCATCCAGGCATGGCATGGGGAAAAAACAGACCATAGCTCATCCCGGCATGAACGAAGAACCCGACATTTTGCATATTTTTTCTGATGCTCTGGATTCATGCTAACGATGGCCAGAAGCTGCACCTAGAAGCAGAAGCTTAACAGGTGGCACAAACGGCAGTTGAAGCTTGACTCCAATTAGAAGTCATGATAGTTTTTCTGTTGCTACTTGGACTGGAAGAGCTGGTGTGCCAGGGCACCATCCTCTGTGTTCTTGAAGTTTAAGTCAACACCTCAATAGGCACTGGTTTAATGAGCTCTTCTCAGCCATCACAAACTTCGAATAGCAGGGCCAAAGTCTGACAAACTTTTAGTTAGGATACCTGGAATGTGAGGAGCTGCTTCAGATGCACTTGAACTTCCCTTTGCAATTCGCTACAAAGAAAAAGATAAAGAGGATCTGGAACATCAGCTCAACCTGGGACTGGCTTCCAATCACACACCAAGTTCATCATAGAAAGGCCATGCATCAAGCTCTTCTACTAGGAACATTATTATTCAGTCTCAGTCCTAATTCGCCAATGTGCACCTTCAGTCTTGAGCCAGCTCTGCAAGCAATAACTGAACATTTAAAGAACTGCATTTTGTGCAGCGATATGGTGCGGTTTCAGAATCTGTTGAAGGAAATAGCAGTGTTGTAAAGATGCACAAATGGTGCAACATGGGTGCTCAAACCTGACTACCGTTAATGTGTTTATCTGCACCTTGGACGGCAGAGGGGAACCTCTCTATTTAGACCTGAAGAGTCATTGCAAAGAGTCATTACTGGACAGTCTTATTTGGTAGAAGGAGAATGGCCTCATGCAAGAAGAGTGTTCTCTTTGTTGTCTCTGAACCTGCCTGTCTAGGATGCCCATCTTGGTACCCAGTTGGCACCTTGCAAGGACGTTGCAATATTGTTTGGAAAACAACCTCATCATTCTCAAATATTTTGCAATGTAGTGTATGCATGCAGCAAGATGGACACAACACAAATCGATGAAACCAGCCTCAGTGAGAGTCCGAGCTGGCCGAGGGTCAGCCTCCAAATTAAAAAAATATTTTTTTCCTGGTCTTTGGAATGCCAAGACGATGGAGATGCAGGCAATCCTGACCGTTCATTTTTTCACGTGTCAGCACAGGAGCCCTCTAGATTGGGCCGGTGTTTTCCGTTACCAGTGCCTTTCAGCTCATGGGCCACGGCCAGCAATTGTTCCAACTGCCACTTTTGGGGCCCATTCCGTTGGGTGCGTGCCCAAGGTGATCCGGACATGTGGGCCCCTCTCGTGGTAGAAACCCTTGAACAACCGATCAAGATCAGCTCAAAATCGAATCAGCATGGGAACAAAGGAAGAGAGATGCATGGATGTAGTTTAATTTGCTCCTAATCTTATCTTAGCCACGTAGCATGTGTACGGTTTGATGTGTGTCCACAGATGGGAGAATTTACTAATCATAAAACATGAAGTGGTACCGATTGCCTCTATAAAATTATGGGGAAAATTCCAAATACCTCTA]
[+] EMBL AK109597 [CCCGACGACGCCGCTTCCCCAATTCCGGCTCCGGCGGCGAGCAGCTGGCTGCGGACGCGCCGTCAAAACCCCAGGAGGATGTGGATCTCCGGTGTACTCTCCGCGGCATGCCGGCATCGGCGGCGCGAAGATTCTGCACCGGCTTAGATCGACGGCGCCCCTCGCCGCGGGGCTTTCGTGGAGAGCAGCCAATTGTCTGAAGATGTGAATATCAAGATTCCAAATGACTAGCGACAAGATCATGTATGTGCAGACGACCCCTGAGGCTGAACCAAACTCATCCAGGCATGGCATGGGGAAAAAACAGACCATAGCTCATCCCGGCATGAACGAAGAACCCGACATTTTGCATATTTTTTCTGATGCTCTGGATTCATGCTAACGATGGCCAGAAGCTGCACCTAGAAGCAGAAGCTTAACAGGTGGCACAAACGGCAGTTGAAGCTTGACTCCAATTAGAAGTCATGATAGTTTTTCTGTTGCTACTTGGACTGGAAGAGCTGGTGTGCCAGGGCACCATCCTCTGTGTTCTTGAAGTTTAAGTCAACACCTCAATAGGCACTGGTTTAATGAGCTCTTCTCAGCCATCACAAACTTCGAATAGCAGGGCCAAAGTCTGACAAACTTTTAGTTAGGATACCTGGAATGTGAGGAGCTGCTTCAGATGCACTTGAACTTCCCTTTGCAATTCGCTACAAAGAAAAAGATAAAGAGGATCTGGAACATCAGCTCAACCTGGGACTGGCTTCCAATCACACACCAAGTTCATCATAGAAAGGCCATGCATCAAGCTCTTCTACTAGGAACATTATTATTCAGTCTCAGTCCTAATTCGCCAATGTGCACCTTCAGTCTTGAGCCAGCTCTGCAAGCAATAACTGAACATTTAAAGAACTGCATTTTGTGCAGCGATATGGTGCGGTTTCAGAATCTGTTGAAGGAAATAGCAGTGTTGTAAAGATGCACAAATGGTGCAACATGGGTGCTCAAACCTGACTACCGTTAATGTGTTTATCTGCACCTTGGACGGCAGAGGGGAACCTCTCTATTTAGACCTGAAGAGTCATTGCAAAGAGTCATTACTGGACAGTCTTATTTGGTAGAAGGAGAATGGCCTCATGCAAGAAGAGTGTTCTCTTTGTTGTCTCTGAACCTGCCTGTCTAGGATGCCCATCTTGGTACCCAGTTGGCACCTTGCAAGGACGTTGCAATATTGTTTGGAAAACAACCTCATCATTCTCAAATATTTTGCAATGTAGTGTATGCATGCAGCAAGATGGACACAACACAAATCGATGAAACCAGCCTCAGTGAGAGTCCGAGCTGGCCGAGGGTCAGCCTCCAAATTAAAAAAATATTTTTTTCCTGGTCTTTGGAATGCCAAGACGATGGAGATGCAGGCAATCCTGACCGTTCATTTTTTCACGTGTCAGCACAGGAGCCCTCTAGATTGGGCCGGTGTTTTCCGTTACCAGTGCCTTTCAGCTCATGGGCCACGGCCAGCAATTGTTCCAACTGCCACTTTTGGGGCCCATTCCGTTGGGTGCGTGCCCAAGGTGATCCGGACATGTGGGCCCCTCTCGTGGTAGAAACCCTTGAACAACCGATCAAGATCAGCTCAAAATCGAATCAGCATGGGAACAAAGGAAGAGAGATGCATGGATGTAGTTTAATTTGCTCCTAATCTTATCTTAGCCACGTAGCATGTGTACGGTTTGATGTGTGTCCACAGATGGGAGAATTTACTAATCATAAAACATGAAGTGGTACCGATTGCCTCTATAAAATTATGGGGAAAATTCCAAATACCTCTA]
consensusID : consensus_5843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence
[TTCTTCTCAGCCATCAGAAACTTCAAATAGCACGGCCAAAGTCTGCAAACTTTTAGGTAGGATGCACTTAGAACATCTCTTGCATATTCGCTACAAAGAAAAAGATGATCTAGGGACTAGCTTCTAATCACACACCAAGTTTATCATAGAAAGGTCATGCATCAAGCTCTTCTACTAGGAACATTATCATGCAACCTCAAGTCCTAATTTACCAATATGCACCTTCAGGCTTCAGCCAGCTCAACAAGCATTAACCAGGCATTTCAAGAACTCCATTATGTCCAAGGATATGCTGCTATTTAAGAATCTGCTGAAGGAAATAGCAATGTTGCAAAGATGCAAAAATGATGCAACATGGATGCTCAAACCTTACTACCAGTAATTTTAGCTGTACTTGAGTGGAACAATATTTGGCTAGGTCTGGTGTGCTGCATAAATTAGTTTCATTCAGATAGGACATGCAAATTAGAGATAGGGGGAATGTTTCCAACATCTTTTTGAAACCTTTTGGCATTGCTGACTGATTCTTTTTGTAAGAAAGGAACAAATCTGAAACAAGAGCATGTTAGGTGACATGTGGCAAATAGATGAATACAAACATTTATCACCGGAAGGATTGGTGGCGATTTTTTTTTTCAAAACAAACTTGTGGGAGGACTGCGGCAATTCGTTCTTCCCCCAACTTGTAGTGTTATACACGAAACATGATAGGCATGTTGAAGCATGAAAATACGTCCTTCACACTTTGTTTTTTCCTCATTTTTTAGATTTCCAGCTGCAACAAATTTGGTGCAAAATTGCTTATGGGGACCTGGTTGGACTGCTGAAAAGAAGCTCA]
[+] EMBL CB631299 [TTCTTCTCAGCCATCAGAAACTTCAAATAGCACGGCCAAAGTCTGCAAACTTTTAGGTAGGATGCACTTAGAACATCTCTTGCATATTCGCTACAAAGAAAAAGATGATCTAGGGACTAGCTTCTAATCACACACCAAGTTTATCATAGAAAGGTCATGCATCAAGCTCTTCTACTAGGAACATTATCATGCAACCTCAAGTCCTAATTTACCAATATGCACCTTCAGGCTTCAGCCAGCTCAACAAGCATTAACCAGGCATTTCAAGAACTCCATTATGTCCAAGGATATGCTGCTATTTAAGAATCTGCTGAAGGAAATAGCAATGTTGCAAAGATGCAAAAATGATGCAACATGGATGCTCAAACCTTACTACCAGTAATTTTAGCTGTACTTGAGTGGAACAATATTTGGCTAGGTCTGGTGTGCTGCATAAATTAGTTTCATTCAGATAGGACATGCAAATTAGAGATAGGGGGAATGTTTCCAACATCTTTTTGAAACCTTTTGGCATTGCTGACTGATTCTTTTTGTAAGAAAGGAACAAATCTGAAACAAGAGCATGTTAGGTGACATGTGGCAAATAGATGAATACAAACATTTATCACCGGAAGGATTGGTGGCGATTTTTTTTTTCAAAACAAACTTGTGGGAGGACTGCGGCAATTCGTTCTTCCCCCAACTTGTAGTGTTATACACGAAACATGATAGGCATGTTGAAGCATGAAAATACGTCCTTCACACTTTGTTTTTTCCTCATTTTTTAGATTTCCAGCTGCAACAAATTTGGTGCAAAATTGCTTATGGGGACCTGGTTGGACTGCTGAAAAGAAGCTCA]
consensusID : consensus_5843#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence
[ACGAAAATTAAATAAAGATTGTTGTTTGAGCTTCCTTTCAGCAGTCCAACCAGGTCCCCATAAGCAATTTTGCACCAAATTTGTTGCAGCTGGAAATCTAAAAAATGNGGAAAAAACAAAGTGTGAAGGACGTATTTTCATGCTTCAACATGCCTATCATGTTTNNTGTATAACACTACAAGTTGGGGGAAGAANNNATTGCCGNNNNCCTCCCACAAGTTTGTTTTGAAAAAAAAAATNGCNNCCAATCCTTCCNNNNNNNNNNNTTTGTATTCATCTNTTTGN]
[+] EMBL CF197246 [ACGAAAATTAAATAAAGATTGTTGTTTGAGCTTCCTTTCAGCAGTCCAACCAGGTCCCCATAAGCAATTTTGCACCAAATTTGTTGCAGCTGGAAATCTAAAAAATGNGGAAAAAACAAAGTGTGAAGGACGTATTTTCATGCTTCAACATGCCTATCATGTTTNNTGTATAACACTACAAGTTGGGGGAAGAANNNATTGCCGNNNNCCTCCCACAAGTTTGTTTTGAAAAAAAAAATNGCNNCCAATCCTTCCNNNNNNNNNNNTTTGTATTCATCTNTTTGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5843#0 CCCGACGACGCCGCTTCCCCAATTCCGGCTCCGGCGGCGAGCAGCTGGCTGCGGACGCGC 60
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 CGTCAAAACCCCAGGAGGATGTGGATCTCCGGTGTACTCTCCGCGGCATGCCGGCATCGG 120
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 CGGCGCGAAGATTCTGCACCGGCTTAGATCGACGGCGCCCCTCGCCGCGGGGCTTTCGTG 180
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 GAGAGCAGCCAATTGTCTGAAGATGTGAATATCAAGATTCCAAATGACTAGCGACAAGAT 240
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 CATGTATGTGCAGACGACCCCTGAGGCTGAACCAAACTCATCCAGGCATGGCATGGGGAA 300
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 AAAACAGACCATAGCTCATCCCGGCATGAACGAAGAACCCGACATTTTGCATATTTTTTC 360
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 TGATGCTCTGGATTCATGCTAACGATGGCCAGAAGCTGCACCTAGAAGCAGAAGCTTAAC 420
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 AGGTGGCACAAACGGCAGTTGAAGCTTGACTCCAATTAGAAGTCATGATAGTTTTTCTGT 480
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 TGCTACTTGGACTGGAAGAGCTGGTGTGCCAGGGCACCATCCTCTGTGTTCTTGAAGTTT 540
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 AAGTCAACACCTCAATAGGCACTGGTTTAATGAGCTCTTCTCAGCCATCACAAACTTCGA 600
consensus_5843#1 ----------------------------------TTCTTCTCAGCCATCAGAAACTTCAA 26
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 ATAGCAGGGCCAAAGTCTGACAAACTTTTAGTTAGGATACCTGGAATGTGAGGAGCTGCT 660
consensus_5843#1 ATAGCACGGCCAAAGTCTG-CAAACTTTTAGGTAGGAT---------------------- 63
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 TCAGATGCACTTGAACTTCCCTTTGCA-ATTCGCTACAAAGAAAAAGATAAAGAGGATCT 719
consensus_5843#1 ------GCACTTAGAACATCTCTTGCATATTCGCTACAAAGAAAAAGAT------GATCT 111
consensus_5843#2 ------------------------------ACGAAAATTAAATAAAGATT-----GTTGT 25
** * * * ****** * * *
consensus_5843#0 GGAACATCAGCTCAACCTGGGACTGGCTTCCAATCACACACCAAGTTCATCATAGAAAGG 779
consensus_5843#1 AG-----------------GGACTAGCTTCTAATCACACACCAAGTTTATCATAGAAAGG 154
consensus_5843#2 TT-----------------GAGCTTCCTTTCAGCAGTCCAACCAGGTCCCCATA-AGCAA 67
* ** *** * ** * ** * **** *
consensus_5843#0 CCATGCATCAAGCTC-TTCTACTAGGAACATTATTATTCAGTCTCA-GTCCTAATTCGCC 837
consensus_5843#1 TCATGCATCAAGCTC-TTCTACTAGGAACATTATCATGCAACCTCAAGTCCTAATTTACC 213
consensus_5843#2 TTTTGCACCAAATTTGTTGCAGCTGGAAATCTAAAAAATGNGGAAAAAACAAAGTGTGA- 126
**** *** * ** * **** ** * * * * *
consensus_5843#0 AATGTGCACCTTCAGTCTTGAGCCAGCTCTGCAAGCAATAACTG-AACATTTAAAGAACT 896
consensus_5843#1 AATATGCACCTTCAGGCTTCAGCCAGCTCAACAAGCATTAACCA-GGCATTTCAAGAACT 272
consensus_5843#2 AGGACGTATTTTCATGCTTCAACATGCCTATCATGTTTNNTGTATAACACTACAAGTTGG 186
* * * **** *** * * ** ** * ** * ***
consensus_5843#0 GCATTTTGTGCAGCGATATGGTGCGGTTTCAGAATCTGTTGAAGGAAATAGCAGTGTTGT 956
consensus_5843#1 CCATTATGTCCAAGGATATGCTGCTATTTAAGAATCTGCTGAAGGAAATAGCAATGTTGC 332
consensus_5843#2 GGGAAGAANNNATTGCCGNNNNCCT-CCCACAAGTTTGTTTTGAAAAAAAAAATNGCNNC 245
* * * * * ** * *** * * *
consensus_5843#0 AAAGATGCACAAATGGTGCAACATGGGTGCTCAAACCTGACTACCGTTAATGTGTTTATC 1016
consensus_5843#1 AAAGATGCAAAAATGATGCAACATGGATGCTCAAACCTTACTACCAGTAAT---TTTAGC 389
consensus_5843#2 CAATCCTTCCNNNNNNNNNNNTTTGTATTCATCTNTTTGN-------------------- 285
** ** * * *
consensus_5843#0 TGCACCTTGGACGGCAGAGGGGAACCTCTCTATTTAGACCTGAAGAGTCATTGCAAAGAG 1076
consensus_5843#1 TGTAC-TTGAGTGGAACAA-------TATTTGGCTAGGTCTGGTGTGC---TGCATAAAT 438
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 TCATTACTGGACAGTCTTATTTGGTAGAAGGAGAATGGCCTCATGCAAGAAGAGTGTTCT 1136
consensus_5843#1 T-----------AGTTTCATTCAGATAGGACATGCAAATTAGAGATAGGGGGAATGTTTC 487
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 CTTTGTTGTCTCTGAACCTGCCTGTCTAGGATGCCCATCTTGGTACCCAGTTGGCACCTT 1196
consensus_5843#1 CAACATCTTTTTGAAACCT-----TTTGGCAT--------TGCTGACTGATT--CTTTTT 532
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 GCAAGGACGTTGCAATATTGTTTGGAAAACAACCTCATCATTCTCAAATATTTTGCAATG 1256
consensus_5843#1 GTAAGAAAGGAACAA----ATCTGAAACAAGAGCATGTTAGGT---GACATGTGGCAAAT 585
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 TAGTGTATGCATGCAGCAAGATGGACACAACACAAATCGATGAAACCAGCCTCAGTGAGA 1316
consensus_5843#1 AGATGAATACAAACATTTAT-----CACCGGAAGGATTGGTGGCGATTTTTTTTTTCAAA 640
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 GTCCGAGCTGGCCGAGGGTCAGCCTCCAAATTAAAAAAATATTTTTTTCCTGGTCTTTGG 1376
consensus_5843#1 A--CAAACTTGTGGGAGGACTGCGGC--AATT-------CGTTCTTCCCCCAA--CTTGT 687
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 AATGCCAAGACGATGGAGATGCAGGCAATCCTGACCGTTCATTTTTTCACGTGTCAGCAC 1436
consensus_5843#1 AGTGTTA------------TACACG-AAACATGATAGG-CATGTTGAAGCATGAAAATAC 733
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 AGGAGCCCTCTAGATTGGGCCGGTGTTTTCCGTTACCAGTGCCTTTCAGCTCATGGGCCA 1496
consensus_5843#1 ----GTCCTTCACACTTTGT-----TTTTTCCTCATT------TTTTAGATTTCCAGCTG 778
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 CGGCCAGCAATTGTTCCAACTGCCACTTTTGGGGCCCATTCCGTTGGGTGCGTGCCCAAG 1556
consensus_5843#1 CAACAAAT--TTGGTGCAAA-ATTGCTTATGGGGACC---TGGTTGGAC---TGCTGAAA 829
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 GTGATCCGGACATGTGGGCCCCTCTCGTGGTAGAAACCCTTGAACAACCGATCAAGATCA 1616
consensus_5843#1 AGAAGCTCA--------------------------------------------------- 838
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 GCTCAAAATCGAATCAGCATGGGAACAAAGGAAGAGAGATGCATGGATGTAGTTTAATTT 1676
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 GCTCCTAATCTTATCTTAGCCACGTAGCATGTGTACGGTTTGATGTGTGTCCACAGATGG 1736
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 GAGAATTTACTAATCATAAAACATGAAGTGGTACCGATTGCCTCTATAAAATTATGGGGA 1796
consensus_5843#1 ------------------------------------------------------------
consensus_5843#2 ------------------------------------------------------------
consensus_5843#0 AAATTCCAAATACCTCTA 1814
consensus_5843#1 ------------------
consensus_5843#2 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||