These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1277 fasta sequence [CTCCCCTCTCTACAGCAACCAGCATTCCATTTCCATAGCAATGACTTTCAACCCTGGCTCTCCTGGCTTCGGCTTCCCCTTTCCCTTCTACCCTCCCAATCCCAACCCTTATGCTCCCCTAAACCCCAATGCTCCGAAGCCACCGGTGATGCCACCGCGCCCTCAAGCCCCGCCACCCCCGCAGCGTTTCCCGCCACCACCTGCCCCGCCCATCCGACCCCCGTCACCTCCAGGCCGCGCTCCACCACCACCCGGTCGTGCACCGCCACCGCCTTCTCAAGCCCCACCGCCCCCACGCCGTGCTCCCCCTCCACCCGCCCTGCCACCGCCACCCCCACGACGTGCCCCACCGCCACCATCAATGCCCCCACCACCACCACCTCGTCGTGCTCCACCCCCACCAGCAACACCTCCGCCCCCGCCACGCCGTGCTCCACCCCCACCGTCACCGCCCATTCGACCACCGCCTCCACCAACTCCTCGCCCCTATGCACCACCACCGCCGTCTCACCCACTAGCACCGCCCCCGCCCCACATCAGCCCACCAGCACCCGTGCCGCCTCCGCCTAGCCCACCACCCCACATCGTCATCATCGTCGTCTTCGTCTCATTCGGCGGCCTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCACAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGACTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCGACGAGGACCTCAAATTCCAGGAGGTCGCCGGCGAGTCGTCGAGCGCCGCCGGAGCAGGGAGCCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTCACGGAGCACATCCATGTCGATGAGAAGATTGTATCAGGGCCTCAGGGGCAAAAGATCGAGATCCTTTCAGAAGATGAGGACATCAGGTTTGAAGAGGAAGGCAGGAAGGAAAAGGGAGATCAAAGATCAAAGACTCGCATCACCAAGACCTGACAAGATGAGTCTGCATGCCCAAGTGTTACTACAGCTCTAAAGAAAGCTACTTCAGCTGAGACGGTAAAGTTATCCCTACACTTGTGTGATTTGATTATTTTGATAAGATTGTATGTTCTTTGGTGTGAATGAAATAAGGGAGTCTCAGACCCCATTTGGTTGAATGGAAAGTGTAACTATTGCTATCAGCATTTGAAATGAATGAAAT] [+] EMBL AK063596 [CTCCCCTCTCTACAGCAACCAGCATTCCATTTCCATAGCAATGACTTTCAACCCTGGCTCTCCTGGCTTCGGCTTCCCCTTTCCCTTCTACCCTCCCAATCCCAACCCTTATGCTCCCCTAAACCCCAATGCTCCGAAGCCACCGGTGATGCCACCGCGCCCTCAAGCCCCGCCACCCCCGCAGCGTTTCCCGCCACCACCTGCCCCGCCCATCCGACCCCCGTCACCTCCAGGCCGCGCTCCACCACCACCCGGTCGTGCACCGCCACCGCCTTCTCAAGCCCCACCGCCCCCACGCCGTGCTCCCCCTCCACCCGCCCTGCCACCGCCACCCCCACGACGTGCCCCACCGCCACCATCAATGCCCCCACCACCACCACCTCGTCGTGCTCCACCCCCACCAGCAACACCTCCGCCCCCGCCACGCCGTGCTCCACCCCCACCGTCACCGCCCATTCGACCACCGCCTCCACCAACTCCTCGCCCCTATGCACCACCACCGCCGTCTCACCCACTAGCACCGCCCCCGCCCCACATCAGCCCACCAGCACCCGTGCCGCCTCCGCCTAGCCCACCACCCCACATCGTCATCATCGTCGTCTTCGTCTCATTCGGCGGCCTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCACAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGACTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCGACGAGGACCTCAAATTCCAGGAGGTCGCCGGCGAGTCGTCGAGCGCCGCCGGAGCAGGGAGCCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTCACGGAGCACATCCATGTCGATGAGAAGATTGTATCAGGGCCTCAGGGGCAAAAGATCGAGATCCTTTCAGAAGATGAGGACATCAGGTTTGAAGAGGAAGGCAGGAAGGAAAAGGGAGATCAAAGATCAAAGACTCGCATCACCAAGACCTGACAAGATGAGTCTGCATGCCCAAGTGTTACTACAGCTCTAAAGAAAGCTACTTCAGCTGAGACGGTAAAGTTATCCCTACACTTGTGTGATTTGATTATTTTGATAAGATTGTATGTTCTTTGGTGTGAATGAAATAAGGGAGTCTCAGACCCCATTTGGTTGAATGGAAAGTGTAACTATTGCTATCAGCATTTGAAATGAAT ] [-] EMBL CB659271 [ GCCCCACATCAGCCCACCAGCACCCGTGCCGCCTCCGCCTAGCCCACCACCCCACATCGTCATCATCGTCGTCTTCGTCTCATTCGGCGGCCTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCACAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGACTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCGACGAGGACCTCAAATTCCAGGAGGTCGCCGGCGAGTCGTCGAGCGCCGCCGGAGCAGGGAGCCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTCACGGAGCACATCCATGTCGATGAGAAGATTGTATCAGGGCCTCAGGGGCAAAAGATCGAGATCCTTTCAGAAGATGAGGACATCAGGTTTGAAGAGGAAGGCAGGAAGGAAAAGGGAGATCAAAGATCAAAGACTCGCATCACCAAGACCTGACAAGATGAGTTTGCATGCCCAAGTGTTACTACAGCTTTAAAGAAAGCTACTTCAGCTGAGACGGTAAAGTTATCCCTACACTTGTGTGATTTGATTATTTTGATAAGATTGTATGTTTTTTGGTGTGAATGAAATAAGGGAGTCTCAGACCCCATTTGGTTGAATGGAAAGTGTAACTATTGCTATCAGCATTTGAAATGAATGAAAT] consensusID : consensus_5861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [GGCGTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCACAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGAGTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCTACGAGGGCCTCAAATTTCAGGAGGTCTCCGGCGAGTCGTTGAGCGCCGCCGGAGCAGGGAGCCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTTGCGGAGCGCATCCATGTTGATGAGAAGATTGTATCTGGGCGTCATGGCGCTAACAATGCAGATCGTTTGGGAGCACGGCGTGGTGGCGGTGGGGCTTGAGAAGGCGGTGGCGGTGCACGACCGGGTGGTGGTGGAGCGCGGCCTGGAGGTGACGGGGGTCGGATGGGCGGGGCAGGTGGTGGCGGGAAACGCTGCGGGGGTGGCGGGGCTTGAGGGCGCGGTGGCATCACCGGTGGCTTCGGAGCATTGGGGTTTAGGGGAGCATAAGGGTTGGGATTGGGAGGGTAGAAGGGAAAGGGGAAGCCGAAGCCAGGAGAGCCAGGGTTGAAAGTCATTGCTATGGAAAGT] [-] EMBL CB659270 [GGCGTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCACAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGAGTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCTACGAGGGCCTCAAATTTCAGGAGGTCTCCGGCGAGTCGTTGAGCGCCGCCGGAGCAGGGAGCCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTTGCGGAGCGCATCCATGTTGATGAGAAGATTGTATCTGGGCGTCATGGCGCTAACAATGCAGATCGTTTGGGAGCACGGCGTGGTGGCGGTGGGGCTTGAGAAGGCGGTGGCGGTGCACGACCGGGTGGTGGTGGAGCGCGGCCTGGAGGTGACGGGGGTCGGATGGGCGGGGCAGGTGGTGGCGGGAAACGCTGCGGGGGTGGCGGGGCTTGAGGGCGCGGTGGCATCACCGGTGGCTTCGGAGCATTGGGGTTTAGGGGAGCATAAGGGTTGGGATTGGGAGGGTAGAAGGGAAAGGGGAAGCCGAAGCCAGGAGAGCCAGGGTTGAAAGTCATTGCTATGGAAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5861#0 CTCCCCTCTCTACAGCAACCAGCATTCCATTTCCATAGCAATGACTTTCAACCCTGGCTC 60 consensus_5861#1 ------------------------------------------------------------ consensus_5861#0 TCCTGGCTTCGGCTTCCCCTTTCCCTTCTACCCTCCCAATCCCAACCCTTATGCTCCCCT 120 consensus_5861#1 ------------------------------------------------------------ consensus_5861#0 AAACCCCAATGCTCCGAAGCCACCGGTGATGCCACCGCGCCCTCAAGCCCCGCCACCCCC 180 consensus_5861#1 ------------------------------------------------------------ consensus_5861#0 GCAGCGTTTCCCGCCACCACCTGCCCCGCCCATCCGACCCCCGTCACCTCCAGGCCGCGC 240 consensus_5861#1 ------------------------------------------------------------ consensus_5861#0 TCCACCACCACCCGGTCGTGCACCGCCACCGCCTTCTCAAGCCCCACCGCCCCCACGCCG 300 consensus_5861#1 ------------------------------------------------------------ consensus_5861#0 TGCTCCCCCTCCACCCGCCCTGCCACCGCCACCCCCACGACGTGCCCCACCGCCACCATC 360 consensus_5861#1 ------------------------------------------------------------ consensus_5861#0 AATGCCCCCACCACCACCACCTCGTCGTGCTCCACCCCCACCAGCAACACCTCCGCCCCC 420 consensus_5861#1 ------------------------------------------------------------ consensus_5861#0 GCCACGCCGTGCTCCACCCCCACCGTCACCGCCCATTCGACCACCGCCTCCACCAACTCC 480 consensus_5861#1 ------------------------------------------------------------ consensus_5861#0 TCGCCCCTATGCACCACCACCGCCGTCTCACCCACTAGCACCGCCCCCGCCCCACATCAG 540 consensus_5861#1 ------------------------------------------------------------ consensus_5861#0 CCCACCAGCACCCGTGCCGCCTCCGCCTAGCCCACCACCCCACATCGTCATCATCGTCGT 600 consensus_5861#1 ------------------------------------------------------------ consensus_5861#0 CTTCGTCTCATTCGGCGGCCTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCA 660 consensus_5861#1 ----------------GGCGTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCA 44 *** **************************************** consensus_5861#0 CAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCA 720 consensus_5861#1 CAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCA 104 ************************************************************ consensus_5861#0 TGTCCACAAGGCGACTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCGA 780 consensus_5861#1 TGTCCACAAGGCGAGTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCTA 164 ************** ******************************************* * consensus_5861#0 CGAGGACCTCAAATTCCAGGAGGTCGCCGGCGAGTCGTCGAGCGCCGCCGGAGCAGGGAG 840 consensus_5861#1 CGAGGGCCTCAAATTTCAGGAGGTCTCCGGCGAGTCGTTGAGCGCCGCCGGAGCAGGGAG 224 ***** ********* ********* ************ ********************* consensus_5861#0 CCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGC 900 consensus_5861#1 CCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGC 284 ************************************************************ consensus_5861#0 AGAGCTCATCAATGTCACGGAGCACATCCATGTCGATGAGAAGATTGTATCAGGGCCTCA 960 consensus_5861#1 AGAGCTCATCAATGTTGCGGAGCGCATCCATGTTGATGAGAAGATTGTATCTGGGCGTCA 344 *************** ****** ********* ***************** **** *** consensus_5861#0 GGG-GCAAAAGATCGAGATCCTTTCAGAAGATGA------GGACATCAGGTTTGAAGAGG 1013 consensus_5861#1 TGGCGCTAACAATGCAGATCGTTTGGGAGCACGGCGTGGTGGCGGTGGGGCTTGAGAAGG 404 ** ** ** ** ***** *** ** * * ** * ** **** *** consensus_5861#0 AAG--GCAGGAAGGAAAAGGGAGATCAAAGATCAAAGACTCGCA-TCACCAAGACCTGAC 1070 consensus_5861#1 CGGTGGCGGTGCACGACCGGGTGGTGGTGGAGCGCGGCCTGGAGGTGACGGGGGTCGGAT 464 * ** * * *** * * ** * * ** * * ** * * ** consensus_5861#0 AAGATGAGTCTGCATGCCCAAGTGTTACTACAGCTCTAAAGAAAGCTACTTCAGCTGAGA 1130 consensus_5861#1 GGGCGGGGCAGGTGGTGGCGGGAAACGCTGCGGGGGTGGCGGGGCTTGAGGGCGCGGTGG 524 * * * * * * ** * * * * * ** * * consensus_5861#0 CGGTAAAGTTATCCCTACACTTGTGTGATTTGATTATTTTGATAAGATTGTATGTTCTTT 1190 consensus_5861#1 CATCACCGGTGGCTTCGGAGCATTGGGGTTTAGGGGAGC--ATAAGGGT-TGGGATTGGG 581 * * * * * * ** * *** ***** * * * * consensus_5861#0 GGTGTGAATGAAATAAGGGAGTCTCAGACCCCATTTGGTTGAATGGAAAGTGTAACTATT 1250 consensus_5861#1 AGGGTAGAAGGGAAAGGGGAAGCCGAAGCCAGGAGAGCCAGGGTTGAAAGT-----CATT 636 * ** * * * * **** * * ** * * * ****** *** consensus_5861#0 GCTATCAGCATTTGAAATGAATGAAAT 1277 consensus_5861#1 GCTATGGAAAGT--------------- 648 ***** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||