cluster # 5861

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Oryza sativa
cluster # 5861 cluster # 5861 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5861#0 length = 1277 sequences # 2

consensus_5861#1 length = 648 sequences # 1

consensusID : consensus_5861#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1277
fasta sequence

                              [CTCCCCTCTCTACAGCAACCAGCATTCCATTTCCATAGCAATGACTTTCAACCCTGGCTCTCCTGGCTTCGGCTTCCCCTTTCCCTTCTACCCTCCCAATCCCAACCCTTATGCTCCCCTAAACCCCAATGCTCCGAAGCCACCGGTGATGCCACCGCGCCCTCAAGCCCCGCCACCCCCGCAGCGTTTCCCGCCACCACCTGCCCCGCCCATCCGACCCCCGTCACCTCCAGGCCGCGCTCCACCACCACCCGGTCGTGCACCGCCACCGCCTTCTCAAGCCCCACCGCCCCCACGCCGTGCTCCCCCTCCACCCGCCCTGCCACCGCCACCCCCACGACGTGCCCCACCGCCACCATCAATGCCCCCACCACCACCACCTCGTCGTGCTCCACCCCCACCAGCAACACCTCCGCCCCCGCCACGCCGTGCTCCACCCCCACCGTCACCGCCCATTCGACCACCGCCTCCACCAACTCCTCGCCCCTATGCACCACCACCGCCGTCTCACCCACTAGCACCGCCCCCGCCCCACATCAGCCCACCAGCACCCGTGCCGCCTCCGCCTAGCCCACCACCCCACATCGTCATCATCGTCGTCTTCGTCTCATTCGGCGGCCTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCACAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGACTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCGACGAGGACCTCAAATTCCAGGAGGTCGCCGGCGAGTCGTCGAGCGCCGCCGGAGCAGGGAGCCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTCACGGAGCACATCCATGTCGATGAGAAGATTGTATCAGGGCCTCAGGGGCAAAAGATCGAGATCCTTTCAGAAGATGAGGACATCAGGTTTGAAGAGGAAGGCAGGAAGGAAAAGGGAGATCAAAGATCAAAGACTCGCATCACCAAGACCTGACAAGATGAGTCTGCATGCCCAAGTGTTACTACAGCTCTAAAGAAAGCTACTTCAGCTGAGACGGTAAAGTTATCCCTACACTTGTGTGATTTGATTATTTTGATAAGATTGTATGTTCTTTGGTGTGAATGAAATAAGGGAGTCTCAGACCCCATTTGGTTGAATGGAAAGTGTAACTATTGCTATCAGCATTTGAAATGAATGAAAT]

[+] EMBL AK063596             [CTCCCCTCTCTACAGCAACCAGCATTCCATTTCCATAGCAATGACTTTCAACCCTGGCTCTCCTGGCTTCGGCTTCCCCTTTCCCTTCTACCCTCCCAATCCCAACCCTTATGCTCCCCTAAACCCCAATGCTCCGAAGCCACCGGTGATGCCACCGCGCCCTCAAGCCCCGCCACCCCCGCAGCGTTTCCCGCCACCACCTGCCCCGCCCATCCGACCCCCGTCACCTCCAGGCCGCGCTCCACCACCACCCGGTCGTGCACCGCCACCGCCTTCTCAAGCCCCACCGCCCCCACGCCGTGCTCCCCCTCCACCCGCCCTGCCACCGCCACCCCCACGACGTGCCCCACCGCCACCATCAATGCCCCCACCACCACCACCTCGTCGTGCTCCACCCCCACCAGCAACACCTCCGCCCCCGCCACGCCGTGCTCCACCCCCACCGTCACCGCCCATTCGACCACCGCCTCCACCAACTCCTCGCCCCTATGCACCACCACCGCCGTCTCACCCACTAGCACCGCCCCCGCCCCACATCAGCCCACCAGCACCCGTGCCGCCTCCGCCTAGCCCACCACCCCACATCGTCATCATCGTCGTCTTCGTCTCATTCGGCGGCCTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCACAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGACTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCGACGAGGACCTCAAATTCCAGGAGGTCGCCGGCGAGTCGTCGAGCGCCGCCGGAGCAGGGAGCCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTCACGGAGCACATCCATGTCGATGAGAAGATTGTATCAGGGCCTCAGGGGCAAAAGATCGAGATCCTTTCAGAAGATGAGGACATCAGGTTTGAAGAGGAAGGCAGGAAGGAAAAGGGAGATCAAAGATCAAAGACTCGCATCACCAAGACCTGACAAGATGAGTCTGCATGCCCAAGTGTTACTACAGCTCTAAAGAAAGCTACTTCAGCTGAGACGGTAAAGTTATCCCTACACTTGTGTGATTTGATTATTTTGATAAGATTGTATGTTCTTTGGTGTGAATGAAATAAGGGAGTCTCAGACCCCATTTGGTTGAATGGAAAGTGTAACTATTGCTATCAGCATTTGAAATGAAT     ]
[-] EMBL CB659271             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCCCCACATCAGCCCACCAGCACCCGTGCCGCCTCCGCCTAGCCCACCACCCCACATCGTCATCATCGTCGTCTTCGTCTCATTCGGCGGCCTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCACAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGACTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCGACGAGGACCTCAAATTCCAGGAGGTCGCCGGCGAGTCGTCGAGCGCCGCCGGAGCAGGGAGCCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTCACGGAGCACATCCATGTCGATGAGAAGATTGTATCAGGGCCTCAGGGGCAAAAGATCGAGATCCTTTCAGAAGATGAGGACATCAGGTTTGAAGAGGAAGGCAGGAAGGAAAAGGGAGATCAAAGATCAAAGACTCGCATCACCAAGACCTGACAAGATGAGTTTGCATGCCCAAGTGTTACTACAGCTTTAAAGAAAGCTACTTCAGCTGAGACGGTAAAGTTATCCCTACACTTGTGTGATTTGATTATTTTGATAAGATTGTATGTTTTTTGGTGTGAATGAAATAAGGGAGTCTCAGACCCCATTTGGTTGAATGGAAAGTGTAACTATTGCTATCAGCATTTGAAATGAATGAAAT]




>consensus_5861#0
CTCCCCTCTCTACAGCAACCAGCATTCCATTTCCATAGCAATGACTTTCAACCCTGGCTC
TCCTGGCTTCGGCTTCCCCTTTCCCTTCTACCCTCCCAATCCCAACCCTTATGCTCCCCT
AAACCCCAATGCTCCGAAGCCACCGGTGATGCCACCGCGCCCTCAAGCCCCGCCACCCCC
GCAGCGTTTCCCGCCACCACCTGCCCCGCCCATCCGACCCCCGTCACCTCCAGGCCGCGC
TCCACCACCACCCGGTCGTGCACCGCCACCGCCTTCTCAAGCCCCACCGCCCCCACGCCG
TGCTCCCCCTCCACCCGCCCTGCCACCGCCACCCCCACGACGTGCCCCACCGCCACCATC
AATGCCCCCACCACCACCACCTCGTCGTGCTCCACCCCCACCAGCAACACCTCCGCCCCC
GCCACGCCGTGCTCCACCCCCACCGTCACCGCCCATTCGACCACCGCCTCCACCAACTCC
TCGCCCCTATGCACCACCACCGCCGTCTCACCCACTAGCACCGCCCCCGCCCCACATCAG
CCCACCAGCACCCGTGCCGCCTCCGCCTAGCCCACCACCCCACATCGTCATCATCGTCGT
CTTCGTCTCATTCGGCGGCCTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCA
CAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCA
TGTCCACAAGGCGACTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCGA
CGAGGACCTCAAATTCCAGGAGGTCGCCGGCGAGTCGTCGAGCGCCGCCGGAGCAGGGAG
CCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGC
AGAGCTCATCAATGTCACGGAGCACATCCATGTCGATGAGAAGATTGTATCAGGGCCTCA
GGGGCAAAAGATCGAGATCCTTTCAGAAGATGAGGACATCAGGTTTGAAGAGGAAGGCAG
GAAGGAAAAGGGAGATCAAAGATCAAAGACTCGCATCACCAAGACCTGACAAGATGAGTC
TGCATGCCCAAGTGTTACTACAGCTCTAAAGAAAGCTACTTCAGCTGAGACGGTAAAGTT
ATCCCTACACTTGTGTGATTTGATTATTTTGATAAGATTGTATGTTCTTTGGTGTGAATG
AAATAAGGGAGTCTCAGACCCCATTTGGTTGAATGGAAAGTGTAACTATTGCTATCAGCA
TTTGAAATGAATGAAAT

consensusID : consensus_5861#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [GGCGTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCACAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGAGTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCTACGAGGGCCTCAAATTTCAGGAGGTCTCCGGCGAGTCGTTGAGCGCCGCCGGAGCAGGGAGCCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTTGCGGAGCGCATCCATGTTGATGAGAAGATTGTATCTGGGCGTCATGGCGCTAACAATGCAGATCGTTTGGGAGCACGGCGTGGTGGCGGTGGGGCTTGAGAAGGCGGTGGCGGTGCACGACCGGGTGGTGGTGGAGCGCGGCCTGGAGGTGACGGGGGTCGGATGGGCGGGGCAGGTGGTGGCGGGAAACGCTGCGGGGGTGGCGGGGCTTGAGGGCGCGGTGGCATCACCGGTGGCTTCGGAGCATTGGGGTTTAGGGGAGCATAAGGGTTGGGATTGGGAGGGTAGAAGGGAAAGGGGAAGCCGAAGCCAGGAGAGCCAGGGTTGAAAGTCATTGCTATGGAAAGT]

[-] EMBL CB659270             [GGCGTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCACAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGAGTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCTACGAGGGCCTCAAATTTCAGGAGGTCTCCGGCGAGTCGTTGAGCGCCGCCGGAGCAGGGAGCCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTTGCGGAGCGCATCCATGTTGATGAGAAGATTGTATCTGGGCGTCATGGCGCTAACAATGCAGATCGTTTGGGAGCACGGCGTGGTGGCGGTGGGGCTTGAGAAGGCGGTGGCGGTGCACGACCGGGTGGTGGTGGAGCGCGGCCTGGAGGTGACGGGGGTCGGATGGGCGGGGCAGGTGGTGGCGGGAAACGCTGCGGGGGTGGCGGGGCTTGAGGGCGCGGTGGCATCACCGGTGGCTTCGGAGCATTGGGGTTTAGGGGAGCATAAGGGTTGGGATTGGGAGGGTAGAAGGGAAAGGGGAAGCCGAAGCCAGGAGAGCCAGGGTTGAAAGTCATTGCTATGGAAAGT]




>consensus_5861#1
GGCGTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCACAAGAAGAGGAGGGAG
ACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGAGT
GAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCTACGAGGGCCTCAAATTT
CAGGAGGTCTCCGGCGAGTCGTTGAGCGCCGCCGGAGCAGGGAGCCATCATACCCCTTGG
TCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTT
GCGGAGCGCATCCATGTTGATGAGAAGATTGTATCTGGGCGTCATGGCGCTAACAATGCA
GATCGTTTGGGAGCACGGCGTGGTGGCGGTGGGGCTTGAGAAGGCGGTGGCGGTGCACGA
CCGGGTGGTGGTGGAGCGCGGCCTGGAGGTGACGGGGGTCGGATGGGCGGGGCAGGTGGT
GGCGGGAAACGCTGCGGGGGTGGCGGGGCTTGAGGGCGCGGTGGCATCACCGGTGGCTTC
GGAGCATTGGGGTTTAGGGGAGCATAAGGGTTGGGATTGGGAGGGTAGAAGGGAAAGGGG
AAGCCGAAGCCAGGAGAGCCAGGGTTGAAAGTCATTGCTATGGAAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5861#0      CTCCCCTCTCTACAGCAACCAGCATTCCATTTCCATAGCAATGACTTTCAACCCTGGCTC 60
consensus_5861#1      ------------------------------------------------------------
                                                                                  

consensus_5861#0      TCCTGGCTTCGGCTTCCCCTTTCCCTTCTACCCTCCCAATCCCAACCCTTATGCTCCCCT 120
consensus_5861#1      ------------------------------------------------------------
                                                                                  

consensus_5861#0      AAACCCCAATGCTCCGAAGCCACCGGTGATGCCACCGCGCCCTCAAGCCCCGCCACCCCC 180
consensus_5861#1      ------------------------------------------------------------
                                                                                  

consensus_5861#0      GCAGCGTTTCCCGCCACCACCTGCCCCGCCCATCCGACCCCCGTCACCTCCAGGCCGCGC 240
consensus_5861#1      ------------------------------------------------------------
                                                                                  

consensus_5861#0      TCCACCACCACCCGGTCGTGCACCGCCACCGCCTTCTCAAGCCCCACCGCCCCCACGCCG 300
consensus_5861#1      ------------------------------------------------------------
                                                                                  

consensus_5861#0      TGCTCCCCCTCCACCCGCCCTGCCACCGCCACCCCCACGACGTGCCCCACCGCCACCATC 360
consensus_5861#1      ------------------------------------------------------------
                                                                                  

consensus_5861#0      AATGCCCCCACCACCACCACCTCGTCGTGCTCCACCCCCACCAGCAACACCTCCGCCCCC 420
consensus_5861#1      ------------------------------------------------------------
                                                                                  

consensus_5861#0      GCCACGCCGTGCTCCACCCCCACCGTCACCGCCCATTCGACCACCGCCTCCACCAACTCC 480
consensus_5861#1      ------------------------------------------------------------
                                                                                  

consensus_5861#0      TCGCCCCTATGCACCACCACCGCCGTCTCACCCACTAGCACCGCCCCCGCCCCACATCAG 540
consensus_5861#1      ------------------------------------------------------------
                                                                                  

consensus_5861#0      CCCACCAGCACCCGTGCCGCCTCCGCCTAGCCCACCACCCCACATCGTCATCATCGTCGT 600
consensus_5861#1      ------------------------------------------------------------
                                                                                  

consensus_5861#0      CTTCGTCTCATTCGGCGGCCTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCA 660
consensus_5861#1      ----------------GGCGTCCTGTTGCTAGCATGCCTCGCCGCCCTCTTCTGCTGGCA 44
                                      *** ****************************************

consensus_5861#0      CAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCA 720
consensus_5861#1      CAAGAAGAGGAGGGAGACGGAGAGGAAGGCGGAGGTGCACAACCTGAGTGGCCATGTCCA 104
                      ************************************************************

consensus_5861#0      TGTCCACAAGGCGACTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCGA 780
consensus_5861#1      TGTCCACAAGGCGAGTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTGTCCATCTA 164
                      ************** ******************************************* *

consensus_5861#0      CGAGGACCTCAAATTCCAGGAGGTCGCCGGCGAGTCGTCGAGCGCCGCCGGAGCAGGGAG 840
consensus_5861#1      CGAGGGCCTCAAATTTCAGGAGGTCTCCGGCGAGTCGTTGAGCGCCGCCGGAGCAGGGAG 224
                      ***** ********* ********* ************ *********************

consensus_5861#0      CCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGC 900
consensus_5861#1      CCATCATACCCCTTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGC 284
                      ************************************************************

consensus_5861#0      AGAGCTCATCAATGTCACGGAGCACATCCATGTCGATGAGAAGATTGTATCAGGGCCTCA 960
consensus_5861#1      AGAGCTCATCAATGTTGCGGAGCGCATCCATGTTGATGAGAAGATTGTATCTGGGCGTCA 344
                      ***************  ****** ********* ***************** **** ***

consensus_5861#0      GGG-GCAAAAGATCGAGATCCTTTCAGAAGATGA------GGACATCAGGTTTGAAGAGG 1013
consensus_5861#1      TGGCGCTAACAATGCAGATCGTTTGGGAGCACGGCGTGGTGGCGGTGGGGCTTGAGAAGG 404
                       ** ** **  **  ***** ***  **  * *       **   *  ** ****  ***

consensus_5861#0      AAG--GCAGGAAGGAAAAGGGAGATCAAAGATCAAAGACTCGCA-TCACCAAGACCTGAC 1070
consensus_5861#1      CGGTGGCGGTGCACGACCGGGTGGTGGTGGAGCGCGGCCTGGAGGTGACGGGGGTCGGAT 464
                        *  ** *      *  *** * *    ** *   * ** *   * **   *  * ** 

consensus_5861#0      AAGATGAGTCTGCATGCCCAAGTGTTACTACAGCTCTAAAGAAAGCTACTTCAGCTGAGA 1130
consensus_5861#1      GGGCGGGGCAGGTGGTGGCGGGAAACGCTGCGGGGGTGGCGGGGCTTGAGGGCGCGGTGG 524
                        *  * *   *      *  *     ** * *   *   *     *      ** * * 

consensus_5861#0      CGGTAAAGTTATCCCTACACTTGTGTGATTTGATTATTTTGATAAGATTGTATGTTCTTT 1190
consensus_5861#1      CATCACCGGTGGCTTCGGAGCATTGGGGTTTAGGGGAGC--ATAAGGGT-TGGGATTGGG 581
                      *   *  * *  *     *    ** * ***          *****  * *  * *    

consensus_5861#0      GGTGTGAATGAAATAAGGGAGTCTCAGACCCCATTTGGTTGAATGGAAAGTGTAACTATT 1250
consensus_5861#1      AGGGTAGAAGGGAAAGGGGAAGCCGAAGCCAGGAGAGCCAGGGTTGAAAGT-----CATT 636
                       * **  * *  * * ****  *  *  **      *   *  * ******      ***

consensus_5861#0      GCTATCAGCATTTGAAATGAATGAAAT 1277
consensus_5861#1      GCTATGGAAAGT--------------- 648
                      *****    * *