cluster # 5881

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Oryza sativa
cluster # 5881 cluster # 5881 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5881#0 length = 2117 sequences # 3
consensusID : consensus_5881#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2117
fasta sequence
                              [CGTCTTCTCTTCTCCCCCCACTTCCTCCGCCTCCTCCGCCGCCGCGCTTCTCGCCGCCGCGGCGAGCCATGG-ACGCCGCAGGTTACCCGAAGATGCAAGGAGGAGGGGCGTCCTCCTCGTCGTCGTCCTCGGCTTCCTGCCGCGCCGCCGACGCAGCCGTGTGGGACGCGGTGCAGCAGCAGAAGCGGCAGCGCTGCCAGGGTTCTTCATCCAATGATCAAGTTGGACTCAGTACTGAAAATAATTCCTTCCAAGCACCTGAACCTGAGCTGCAGAATTCTGACTGTGTGGAAGATGAGGAAGAAGATTACTATTTGTATGATGAGGATGATGTCTGCTATGATGATGATGGAGACTATGAATTTGATGAAACTGACTTCAATCAGCAGCTAGCTGATAAGTTTGATGGTTTGGATTTGCCTCCGGGAGTGGAGGCTACCGTTCCATGGCTGC-AAAAAAAGGATATTGCTGATGGACCTAGCACTTTCAAGTCAATGGCAGAACTAGATGCTGATATTACTAAGAAATATGAATTCTTTAAGCAGTTTGATGTTGTTGAGAATTTTTCGGACCATCATTATGCTGATAAGCCTGTTGGGAAGACA-GGGAAAGACTGGACAAAAAGGATTCAGTATGACTGGAAACTTCTGGAGAAAGATTTACCAGCATCCATATATGTCCGTGT-GTCTG-AAAATCGAATGGACCTTCTGAGGGCTGTAATAATTGGACCTCAAGGAACACCTTACCATGATGGCCTTTTCTTCTTTGATGCTCAATTTACTAGTACTTATCCATCTACTCCTCCAGTGGTATATTATCATTCTGGAGGGCTTCGGCTCAATCCAAATTTATATGCTTGTGGAAAAGTCTGTCTTAGCCTGCTAGGCACCTGGTCTGGTAGTGGTTGTGAGAAGTGGAACTCAGCTCACTCAACTATGCTACAGGTTTTAGTCTCCATTCAAGCTCTCGTATTGAATGAGAACCCATACTTCAATGAGCCAGGATATGAGACCTATGCCAACAGTGCTACTGGACAGAAGAGTGCCATGGACTATAATGATACCACATTTCAGTACTCATGCAGGACGATGTTATACTCACTCCGTAGATCTCCACAGCACTTTGATGCCCTTGTAGCTGGCCACTTCCGCCACCGTGGTCATGCCATTCTGGCTGCATGCAAATATTACATGGAAGGTCATAAGGTTGGGTCCGTAGTCCCTAACGAGGACGAGGAGGATGCGAAGCAGCAGGACGACACTGATGCAGGAGGATCCGGCAGCAGCAGCGGAGCAAAGCCGCAGCCTGAAAAGCCAGACCTGTGCAAGGGCCGTGCTGCATCCTTCAAAACCAACATGGCCGTTCTGTTTGAGGAGCTCTTGATGGAATTCAACGTCAAGGGTGCTGACACCAAGAAGTTCTGCGATGAGAAGTTGAAGAAGAACCAGCAGGCTGCTGCTGCTGCTCGCTGAAGAGGCCCCCCAGCTGCAGCTACAAAACGCACAGATCTTCTCTAGTTCTGAGGGTTTCATAATGAAGCGAAAACCGTAGAAAGGGGTTTTGCTTGCCTAACTATAGAAGTGCTGTGTAGATAGTCCATTCTCGTTTTTCTCCTTTTGTTGTACAGGTTGAGTGTGTGGACTTAAAAAATTTAAATGATCATGTTAGATGCTAACTGAAGTATCATCAACCCACCCCTCGTTGTGGTGCGATCATGAAATAGACACCTGCATAAGTAAGCAAGGTGGCGTTCCATATGATTTATGTTAGCTTGCATTTAGGTTACACCCGTTGTTACTTGCAAGAGTGTTCTCCATCGGCTAGCGTGGTGGCTTTGATCATATGGTTAGATTTGCCCTTTTTCTTGTGAGTTCACTTTTTTTGCAGCTAACACTTGCGTTAGTTTCAAACTGCTTTACTAATAGATTTAATTCAACCTTGAGTTGACATTTATCTTCTCGGAAACATACACAGATAATGGTTATCTCAAGGTCGAATTACATCCGTCAGTAAAGAATTATTCATATGTTTCCGAGAAGATAACCATTATCTTGTATGAAACATTTGAACCATTTGTGCGATTTATCGTGGCTAGACTTTTTTTTTTAAAAAAAAAA]

[+] EMBL AK069430             [CGTCTTCTCTTCTCCCCCCACTTCCTCCGCCTCCTCCGCCGCCGCGCTTCTCGCCGCCGCGGCGAGCCATGG ACGCCGCAGGTTACCCGAAGATGCAAGGAGGAGGGGCGTCCTCCTCGTCGTCGTCCTCGGCTTCCTGCCGCGCCGCCGACGCAGCCGTGTGGGACGCGGTGCAGCAGCAGAAGCGGCAGCGCTGCCAGGGTTCTTCATCCAATGATCAAGTTGGACTCAGTACTGAAAATAATTCCTTCCAAGCACCTGAACCTGAGCTGCAGAATTCTGACTGTGTGGAAGATGAGGAAGAAGATTACTATTTGTATGATGAGGATGATGTCTGCTATGATGATGATGGAGACTATGAATTTGATGAAACTGACTTCAATCAGCAGCTAGCTGATAAGTTTGATGGTTTGGATTTGCCTCCGGGAGTGGAGGCTACCGTTCCATGGCTGC AAAAAAAGGATATTGCTGATGGACCTAGCACTTTCAAGTCAATGGCAGAACTAGATGCTGATATTACTAAGAAATATGAATTCTTTAAGCAGTTTGATGTTGTTGAGAATTTTTCGGACCATCATTATGCTGATAAGCCTGTTGGGAAGACA GGGAAAGACTGGACAAAAAGGATTCAGTATGACTGGAAACTTCTGGAGAAAGATTTACCAGCATCCATATATGTCCGTGT GTCTG AAAATCGAATGGACCTTCTGAGGGCTGTAATAATTGGACCTCAAGGAACACCTTACCATGATGGCCTTTTCTTCTTTGATGCTCAATTTACTAGTACTTATCCATCTACTCCTCCAGTGGTATATTATCATTCTGGAGGGCTTCGGCTCAATCCAAATTTATATGCTTGTGGAAAAGTCTGTCTTAGCCTGCTAGGCACCTGGTCTGGTAGTGGTTGTGAGAAGTGGAACTCAGCTCACTCAACTATGCTACAGGTTTTAGTCTCCATTCAAGCTCTCGTATTGAATGAGAACCCATACTTCAATGAGCCAGGATATGAGACCTATGCCAACAGTGCTACTGGACAGAAGAGTGCCATGGACTATAATGATACCACATTTCAGTACTCATGCAGGACGATGTTATACTCACTCCGTAGATCTCCACAGCACTTTGATGCCCTTGTAGCTGGCCACTTCCGCCACCGTGGTCATGCCATTCTGGCTGCATGCAAATATTACATGGAAGGTCATAAGGTTGGGTCCGTAGTCCCTAACGAGGACGAGGAGGATGCGAAGCAGCAGGACGACACTGATGCAGGAGGATCCGGCAGCAGCAGCGGAGCAAAGCCGCAGCCTGAAAAGCCAGACCTGTGCAAGGGCCGTGCTGCATCCTTCAAAACCAACATGGCCGTTCTGTTTGAGGAGCTCTTGATGGAATTCAACGTCAAGGGTGCTGACACCAAGAAGTTCTGCGATGAGAAGTTGAAGAAGAACCAGCAGGCTGCTGCTGCTGCTCGCTGAAGAGGCCCCCCAGCTGCAGCTACAAAACGCACAGATCTTCTCTAGTTCTGAGGGTTTCATAATGAAGCGAAAACCGTAGAAAGGGGTTTTGCTTGCCTAACTATAGAAGTGCTGTGTAGATAGTCCATTCTCGTTTTTCTCCTTTTGTTGTACAGGTTGAGTGTGTGGACTTAAAAAATTTAAATGATCATGTTAGATGCTAACTGAAGTATCATCAACCCACCCCTCGTTGTGGTGCGATCATGAAATAGACACCTGCATAAGTAAGCAAGGTGGCG                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU181867             [         TTCTCCCCCCACTTCCTCCGCCTCCTCCGCCGCCGCGCTTCTCGCCGCCGCGGCGAGCCATGGNACGCCGCAGGTTACCCGAAGATGCAAGGAGGAGGGGCGTCCTCCTCGTCGTCGTCCTCGGCTTCCTGCCGCGCCGCCGACGCAGCCGTGTGGGACGCGGTGCAGCAGCAGAAGCGGCAGCGCTGCCAGGGTTCTTCATCCAATGATCAAGTTGGACTCAGTACTGAAAATAATTCCTTCCAAGCACCTGAACCTGAGCTGCAGAATTCTGACTGTGTGGAAGATGAGGAAGAAGATTACTATTTGTATGATGAGGATGATGTCTGCTATGATGATGATGGAGACTATGAATTTGATGAAACTGACTTCAATCAGCAGCTAGCTGATAAGTTTGATGGTTTGGATTTGCCTCCGGGAGTGGAGGCTACCGTTCCATGGCTGCAAAAAAAAGGATATTGCTGATGGACCTAGCACTTTCAAGTCAATGGCAGAACTAGATGCTGATATTACTAAGAAATATGAATTCTTTAAGCAGTTTGATGTTGTTGAGAATTTTTCGGACCATCATTATGCTGATAAGCCTGTTGGGAAGACAGGGGAAAGACTGGACAAAAAGGATTCAGTATGACTGGAAACTTCTGGAGAAAGATTTACCAGCATCCATATATGTCCGTGTGGTCTGAAAAATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI812298             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAAAAATTTAAATGATCATGTTAGATGCTAACTGAAGTATCATCAACCCACCCCTCGTTGTGGTGCGATCATGAAATAGACACCTGCATAAGTAAGCAAGGTGCGGTTCCATATGATTTATGTTAGCTTGCATTTAGGTTACACCCGTTGTTACTTGCAAGAGTGTTCTCCATCGGCTAGCGTGGTGGCTTTGATCATATGGTTAGATTTGCCCTTTTTCTTGTGAGTTCACTTTTTTTGCAGCTAACACTTGCGTTAGTTTCAAACTGCTTTACTAATAGATTTAATTCAACCTTGAGTTGACATTTATCTTCTCGGAAACATACACAGATAATGGTTATCTCAAGGTCGAATTACATCCGTCAGTAAAGAATTATTCATATGTTTCCGAGAAGATAACCATTATCTTGTATGAAACATTTGAACCATTTGTGCGATTTATCGTGGCTAGACTTTTTTTTTTAAAAAAAAAA]




>consensus_5881#0
CGTCTTCTCTTCTCCCCCCACTTCCTCCGCCTCCTCCGCCGCCGCGCTTCTCGCCGCCGC
GGCGAGCCATGGACGCCGCAGGTTACCCGAAGATGCAAGGAGGAGGGGCGTCCTCCTCGT
CGTCGTCCTCGGCTTCCTGCCGCGCCGCCGACGCAGCCGTGTGGGACGCGGTGCAGCAGC
AGAAGCGGCAGCGCTGCCAGGGTTCTTCATCCAATGATCAAGTTGGACTCAGTACTGAAA
ATAATTCCTTCCAAGCACCTGAACCTGAGCTGCAGAATTCTGACTGTGTGGAAGATGAGG
AAGAAGATTACTATTTGTATGATGAGGATGATGTCTGCTATGATGATGATGGAGACTATG
AATTTGATGAAACTGACTTCAATCAGCAGCTAGCTGATAAGTTTGATGGTTTGGATTTGC
CTCCGGGAGTGGAGGCTACCGTTCCATGGCTGCAAAAAAAGGATATTGCTGATGGACCTA
GCACTTTCAAGTCAATGGCAGAACTAGATGCTGATATTACTAAGAAATATGAATTCTTTA
AGCAGTTTGATGTTGTTGAGAATTTTTCGGACCATCATTATGCTGATAAGCCTGTTGGGA
AGACAGGGAAAGACTGGACAAAAAGGATTCAGTATGACTGGAAACTTCTGGAGAAAGATT
TACCAGCATCCATATATGTCCGTGTGTCTGAAAATCGAATGGACCTTCTGAGGGCTGTAA
TAATTGGACCTCAAGGAACACCTTACCATGATGGCCTTTTCTTCTTTGATGCTCAATTTA
CTAGTACTTATCCATCTACTCCTCCAGTGGTATATTATCATTCTGGAGGGCTTCGGCTCA
ATCCAAATTTATATGCTTGTGGAAAAGTCTGTCTTAGCCTGCTAGGCACCTGGTCTGGTA
GTGGTTGTGAGAAGTGGAACTCAGCTCACTCAACTATGCTACAGGTTTTAGTCTCCATTC
AAGCTCTCGTATTGAATGAGAACCCATACTTCAATGAGCCAGGATATGAGACCTATGCCA
ACAGTGCTACTGGACAGAAGAGTGCCATGGACTATAATGATACCACATTTCAGTACTCAT
GCAGGACGATGTTATACTCACTCCGTAGATCTCCACAGCACTTTGATGCCCTTGTAGCTG
GCCACTTCCGCCACCGTGGTCATGCCATTCTGGCTGCATGCAAATATTACATGGAAGGTC
ATAAGGTTGGGTCCGTAGTCCCTAACGAGGACGAGGAGGATGCGAAGCAGCAGGACGACA
CTGATGCAGGAGGATCCGGCAGCAGCAGCGGAGCAAAGCCGCAGCCTGAAAAGCCAGACC
TGTGCAAGGGCCGTGCTGCATCCTTCAAAACCAACATGGCCGTTCTGTTTGAGGAGCTCT
TGATGGAATTCAACGTCAAGGGTGCTGACACCAAGAAGTTCTGCGATGAGAAGTTGAAGA
AGAACCAGCAGGCTGCTGCTGCTGCTCGCTGAAGAGGCCCCCCAGCTGCAGCTACAAAAC
GCACAGATCTTCTCTAGTTCTGAGGGTTTCATAATGAAGCGAAAACCGTAGAAAGGGGTT
TTGCTTGCCTAACTATAGAAGTGCTGTGTAGATAGTCCATTCTCGTTTTTCTCCTTTTGT
TGTACAGGTTGAGTGTGTGGACTTAAAAAATTTAAATGATCATGTTAGATGCTAACTGAA
GTATCATCAACCCACCCCTCGTTGTGGTGCGATCATGAAATAGACACCTGCATAAGTAAG
CAAGGTGGCGTTCCATATGATTTATGTTAGCTTGCATTTAGGTTACACCCGTTGTTACTT
GCAAGAGTGTTCTCCATCGGCTAGCGTGGTGGCTTTGATCATATGGTTAGATTTGCCCTT
TTTCTTGTGAGTTCACTTTTTTTGCAGCTAACACTTGCGTTAGTTTCAAACTGCTTTACT
AATAGATTTAATTCAACCTTGAGTTGACATTTATCTTCTCGGAAACATACACAGATAATG
GTTATCTCAAGGTCGAATTACATCCGTCAGTAAAGAATTATTCATATGTTTCCGAGAAGA
TAACCATTATCTTGTATGAAACATTTGAACCATTTGTGCGATTTATCGTGGCTAGACTTT
TTTTTTTAAAAAAAAAA
clustalw multiple alignements is not computed in this case