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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1474 fasta sequence
[ATCGAACACCTTGCGATCACCCTCTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCCGGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGGGGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGTTTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCTCGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGATGGCCGATCACCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGACACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGAGTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACATGGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGATGATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCACCCTCGTCAAGCAAGTGGCGACGACGTCAGCACCTTCCGTTCGACAGCCGGCGAGAACGACACCACCTTTGGTCATATGTGTGCCGTGATGAGGGGAATGGACAGGATGCACTCGGATCTGCGCAAGGCATCCAGGGCCTTGAATGACGGGAAGCTCGTGAGGATCATAGCTCTGAAGGATGAGATCGCACGCCTGAAGAAGGATGAGATCGCACGCCTAAAGAAGGAGAATGCTCAGTTGAAGAATCCGCAACACGCCCCGCAAGTCGACGACGGCACCCGTGCGCATTCAGCTTGCGCCCAGGAACCCACCTCCGCCCGCAGTTCCCGCAGCTCCTGCAGCTCCAGCTCCAGTCCCAGCTCCTGTCCCAGTGACAGCTCCCGCGTCCGCTCTCTCCTTCGCTCCAGCATTAGCCGCCAGGGGTCCAGCCAGTGGCAACGGGGGTTGGTTGCCTGCTACTCCCAGTGGCAGCCGCGACCACAGCAGCAGCAGTTCCAGTGGCTCGGAGCCGGGCAGCGGCGAGATGTATCTGCCAAACTCCAGGAGCCGCTCAGAGGGACGTGGTGACGAGCAGGAGGACGCCCTCGACTCCACCGACCGCAGGAGCCGTTCCGAGTATTAGGCTCGCTTTCCCTTAGTTTATCGACTGCTTAGTTTTTGTCTGCTAGTTTGTGTGTTTAGGTCTGTTCGCTTGGGGGTCAGTCGATGGTCAATATCATGTGCCTATGATATGGCTGTCATAATAAGGATTTGCCTGCTGTTTTAAGTATTTTAATTCAGATCAGAACAATTGCAGTTTAAATTCCTATATAATAAAGCTTA]
[+] EMBL AK106483 [ATCGAACACCTTGCGATCACCCTCTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCCGGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGGGGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGTTTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCTCGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGATGGCCGATCACCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGACACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGAGTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACATGGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGATGATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCACCCTCGTCAAGCAAGTGGCGACGACGTCAGCACCTTCCGTTCGACAGCCGGCGAGAACGACACCACCTTTGGTCATATGTGTGCCGTGATGAGGGGAATGGACAGGATGCACTCGGATCTGCGCAAGGCATCCAGGGCCTTGAATGACGGGAAGCTCGTGAGGATCATAGCTCTGAAGGATGAGATCGCACGCCTGAAGAAGGATGAGATCGCACGCCTAAAGAAGGAGAATGCTCAGTTGAAGAATCCGCAACACGCCCCGCAAGTCGACGACGGCACCCGTGCGCATTCAGCTTGCGCCCAGGAACCCACCTCCGCCCGCAGTTCCCGCAGCTCCTGCAGCTCCAGCTCCAGTCCCAGCTCCTGTCCCAGTGACAGCTCCCGCGTCCGCTCTCTCCTTCGCTCCAGCATTAGCCGCCAGGGGTCCAGCCAGTGGCAACGGGGGTTGGTTGCCTGCTACTCCCAGTGGCAGCCGCGACCACAGCAGCAGCAGTTCCAGTGGCTCGGAGCCGGGCAGCGGCGAGATGTATCTGCCAAACTCCAGGAGCCGCTCAGAGGGACGTGGTGACGAGCAGGAGGACGCCCTCGACTCCACCGACCGCAGGAGCCGTTCCGAGTATTAGGCTCGCTTTCCCTTAGTTTATCGACTGCTTAGTTTTTGTCTGCTAGTTTGTGTGTTTAGGTCTGTTCGCTTGGGGGTCAGTCGATGGTCAATATCATGTGCCTATGATATGGCTGTCATAATAAGGATTTGCCTGCTGTTTTAAGTATTTTAATTCAGATCAGAACAATTGCAGTTTAAATTCCTATATAATAAAGCTTA]
[-] EMBL CB658395 [ CCGTGATGAGGGGAATGGACAGGATGCACTCGGATCTGCGCAAGGCATCCAGGGCCTTGAATGACGGGAAGCTCGTGAGGATCATAGCTCTGAAGGATGAGATCGCACGCCTGAAGAAGGATGAGATCGCACGCCTAAAGAAGGAGAATGCTCAGTTGAAGAATCCGCAACACGCCCCGCAAGTCGACGACGGCACCCGTGCGCATTCAGCTTGCGCCCAGGAACCCACCTCCGCCCGCAGTTCCCGCAGCTCCTGCAGCTCCAGCTCCAGTCCCAGCTCCTGTCCCAGTGTCAGCTCCCGCGTCCGCTCTCTCCTTCGCTCCAGCATTAGCCGCCAGGGGTCCAGCCAGTGGCAACGGGGGTTGGTTGCCTGCTACTCCCAGTGGCAGCCGCGACCACAGCAGCAGCAGTTCCAGTGGCTCGGAGCCGGGCAGCGGCGAGATGTATCTGCCAAACTCCAGGAGCCGCTCAGAGGGACGTGGTGACGAGCAGGAGGACGCCCTCGACTCCACCGACCGCAGGAGCCGTTCCGAGTATTAGGCTCGCTTTCCCTTAGTTTATCGACTGCTTAGTTTTTGTCTGCTAGTTTGTGTGTTTAGGTCTGTTCGCTTGGGGGTCAGTCGATGGTCAATATCATGTGCCTATGATATGGCTGTCATAATAAGGA TAGGGTGCTGTTTTAAGTTTT ]
consensusID : consensus_5886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence
[CTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCCGGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGGGGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGTTTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCTCGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGATTTCGGCTCTCCCGACGCTCTGGTGTACCTTGAAATAGTCGCCGAAGTTCCTTCAGCTGCAGAGCAAGATGGCCGATCACCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGACACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGAGTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACATGGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGATGATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCACCCTCGTCAAGCAAGTGGCGACGACCTCAGCACCTTCCGTTCGACAGCCGGCCGAGAACGACACCCACCTTTGG]
[+] EMBL CB658394 [CTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCCGGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGGGGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGTTTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCTCGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGATTTCGGCTCTCCCGACGCTCTGGTGTACCTTGAAATAGTCGCCGAAGTTCCTTCAGCTGCAGAGCAAGATGGCCGATCACCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGACACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGAGTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACATGGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGATGATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCACCCTCGTCAAGCAAGTGGCGACGACCTCAGCACCTTCCGTTCGACAGCCGGCCGAGAACGACACCCACCTTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5886#0 ATCGAACACCTTGCGATCACCCTCTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCC 60
consensus_5886#1 -----------------------CTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCC 37
*************************************
consensus_5886#0 GGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGG 120
consensus_5886#1 GGCCGGAGCAGGAGGTTAGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGG 97
************************************************************
consensus_5886#0 GGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGT 180
consensus_5886#1 GGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCTGCCGT 157
************************************************************
consensus_5886#0 TTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCT 240
consensus_5886#1 TTGCCCCTGTCCTGCACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCATCTCGCCATCT 217
************************************************************
consensus_5886#0 CGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGT 300
consensus_5886#1 CGCGAAATTGTGTATCGATTAGTGGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGT 277
************************************************************
consensus_5886#0 TGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGAT------------------ 342
consensus_5886#1 TGATCAAGATTATACCAAGAATAAGAACTATCCTGAGCAGATTTCGGCTCTCCCGACGCT 337
******************************************
consensus_5886#0 ---------------------------------------------------GGCCGATCA 351
consensus_5886#1 CTGGTGTACCTTGAAATAGTCGCCGAAGTTCCTTCAGCTGCAGAGCAAGATGGCCGATCA 397
*********
consensus_5886#0 CCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGAC 411
consensus_5886#1 CCCACCCAACCATCGCGGAGAAGGCATGGATGACTTTGTGGCAGAGTTGGCTCGCATGAC 457
************************************************************
consensus_5886#0 ACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGA 471
consensus_5886#1 ACTGGTGGTGGGCTACCCCAATGCGCCAGAGTATTCGACTGTTCCACCGCTCAGTGGCGA 517
************************************************************
consensus_5886#0 GTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACAT 531
consensus_5886#1 GTTCCCTCACCGTGTTCGCCTGGAGGTTCATGGCTATGTGCATACCTGCCTCGCTAACAT 577
************************************************************
consensus_5886#0 GGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGAT 591
consensus_5886#1 GGTGGTTGAGGCATCCGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGAT 637
************************************************************
consensus_5886#0 GATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCA 651
consensus_5886#1 GATGGCCAGATTACGGGAGCGCCACAACTACATCTTCTGCAACACGGCGTACCGGTTTCA 697
************************************************************
consensus_5886#0 CCCTCGTCAAGCAAGTGGCGACGACGTCAGCACCTTCCGTTCGACAGCCGGC-GAGAACG 710
consensus_5886#1 CCCTCGTCAAGCAAGTGGCGACGACCTCAGCACCTTCCGTTCGACAGCCGGCCGAGAACG 757
************************* ************************** *******
consensus_5886#0 ACACC-ACCTTTGGTCATATGTGTGCCGTGATGAGGGGAATGGACAGGATGCACTCGGAT 769
consensus_5886#1 ACACCCACCTTTGG---------------------------------------------- 771
***** ********
consensus_5886#0 CTGCGCAAGGCATCCAGGGCCTTGAATGACGGGAAGCTCGTGAGGATCATAGCTCTGAAG 829
consensus_5886#1 ------------------------------------------------------------
consensus_5886#0 GATGAGATCGCACGCCTGAAGAAGGATGAGATCGCACGCCTAAAGAAGGAGAATGCTCAG 889
consensus_5886#1 ------------------------------------------------------------
consensus_5886#0 TTGAAGAATCCGCAACACGCCCCGCAAGTCGACGACGGCACCCGTGCGCATTCAGCTTGC 949
consensus_5886#1 ------------------------------------------------------------
consensus_5886#0 GCCCAGGAACCCACCTCCGCCCGCAGTTCCCGCAGCTCCTGCAGCTCCAGCTCCAGTCCC 1009
consensus_5886#1 ------------------------------------------------------------
consensus_5886#0 AGCTCCTGTCCCAGTGACAGCTCCCGCGTCCGCTCTCTCCTTCGCTCCAGCATTAGCCGC 1069
consensus_5886#1 ------------------------------------------------------------
consensus_5886#0 CAGGGGTCCAGCCAGTGGCAACGGGGGTTGGTTGCCTGCTACTCCCAGTGGCAGCCGCGA 1129
consensus_5886#1 ------------------------------------------------------------
consensus_5886#0 CCACAGCAGCAGCAGTTCCAGTGGCTCGGAGCCGGGCAGCGGCGAGATGTATCTGCCAAA 1189
consensus_5886#1 ------------------------------------------------------------
consensus_5886#0 CTCCAGGAGCCGCTCAGAGGGACGTGGTGACGAGCAGGAGGACGCCCTCGACTCCACCGA 1249
consensus_5886#1 ------------------------------------------------------------
consensus_5886#0 CCGCAGGAGCCGTTCCGAGTATTAGGCTCGCTTTCCCTTAGTTTATCGACTGCTTAGTTT 1309
consensus_5886#1 ------------------------------------------------------------
consensus_5886#0 TTGTCTGCTAGTTTGTGTGTTTAGGTCTGTTCGCTTGGGGGTCAGTCGATGGTCAATATC 1369
consensus_5886#1 ------------------------------------------------------------
consensus_5886#0 ATGTGCCTATGATATGGCTGTCATAATAAGGATTTGCCTGCTGTTTTAAGTATTTTAATT 1429
consensus_5886#1 ------------------------------------------------------------
consensus_5886#0 CAGATCAGAACAATTGCAGTTTAAATTCCTATATAATAAAGCTTA 1474
consensus_5886#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||