cluster # 5890

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Oryza sativa
cluster # 5890 cluster # 5890 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5890#0 length = 1983 sequences # 1

consensus_5890#1 length = 683 sequences # 1
consensus_5890#2 length = 677 sequences # 1

consensusID : consensus_5890#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1983
fasta sequence

                              [CTCCATCGCGGCTTCCGGAGTTCCACCGCCGCGCTCTTCCCCCATCGGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGAAGCGAAGGTGAGTGTACATGTGTTAGGGTGAACTCCCAGACGCGGCCGCTCAACGGAGAGGGAAGCGATTTTCTGGGGGACAGGGGGTTTATTGGTCTGCATTGGATATCAATCAGGGGTGTAGCGTCTGCATTCATTCACTCGAACAAAGAAGAGGGTTTGTGCCTGATCAAAATTGCGCACAAAGAATAAGAGGTTCTTGGTTAGGTTTTGTACCTGATCCACACAGATTTGTTGAGTGGCAAAAAGGGCCAAGAAAATGGGTGTGGTGACAAGGGCCAAGAAGAGGAAGCTGGAGGAGGAATCCAGCAACCCACATCTGGCGCCCGGAGGAGGAGAAGACCTGATAAACCGCCTCCCAGATGATATCCTCATCGGCATCATCACCATCCTCCCCGGCAAGGATGCGGCCCGCACCCAGGTGCTCTCGCGGCGGTGGCGCCCCCTATGGCGATCCGCGCCTCTCAATCTTGAGGCCAGGGTCAATGGTGGCAGAATAGCTAAGGATGTGGCCACCATCCGCAGCACGCTGCGAACCCACAAGGGTCCTGTCTGCCGATTCTCTGTCAGCTGGACCTTTGACTACAACCACTTTCCGGTCGTTGATTCCTTGCTTGGATCGCCTAGGCTTGACAACCTACAGGAGTTTGAACTTTTCTATCATTATAATTGCTCTCGCTATCCTCCAGTTCCGCGGTCTGTACTCCGTCTCTCGCCTACTCTACGTGTTCTCTGGATTAGTGGAACATGTGACACGCTTCTGTTTCCCATGGAGACTGCTTATTTCCCACACCTTATGCAGCTCACCCTATCCAATGTGAACATCTCAGATAGCACTCTCCATGCTCTTCTGTCACAATGCCCTGTCTTGGAGAGCTTGGTGCTGGCTGGAACAGGGGCTGTCGTCGTCTCCGGATCAGCTCCTTGACCCTTCGGAGCCTTGGTGTGTCAAATGATACCCGAAAAGATGAAAAGCTGGAGGAAGTCATTGTTGAGGATGCCCCACTCCTGGAAAGGCTTACCCCACACACTATATGGCAGGGTGACTTTGTTATTCGGGTTATTCAGGCACCGAAACTGAAGACATTGGGCTATCTAAGCCATAAAATTACCACACTTGAGCTTGGAACCATGGTTTTCCAGAAGATGGTACCTGTTAGTCTGTCCAATGTGATGCGCAGTGTGAAGATTTTAGCCCTTGACACCACTCCTGATCTGGATGTTGTTATTGACTTCATAAAATGCTTTCCATGCGTAGAAAAGCTATACATTGTGGCATTCAATCAGGGGAACTTAAAGAATATACGGCGAAATGTTTCACTTGAGTGCTTTGATCTACATCTCAAGATGGTGGAATTTATAAACTATCAGGGAAATATGTTAGATTTGAACTTCATCAGGTTCTTTGTGTTAAATGCTCGAGTGCTAGAATGTATCAAGCTTGTAGCCCGTCGTGACAAATGTGAAGCAAAATGGATTGAAAAACAAAATCAGAAGCTACAGCTTTATGGCAGAGCTTCACGAAGAGTTACATTTGATTTTCAGGCTGATTATGGGGTGGATAGTTTGGTACACATGAAGCACATCAGTGATTTGACTACAGATGATCCCTTTGATAGATCATTTTGTAGATGCCGTGATGAGGAAATATATTAGTTCATTTGAAGCTGTTTATCAGTCATATACTTTGGTAAGTATCAAGTGCATGTTTAGTTTACATGCCTGAAATATCTTATTTTGGCATATTTTGTTGCAAGAATGGAATATGTATTTTGCCAAAGAAGTTGCATTGCATTGATCTATTCTAGTATTTTTACTCTTTCTGTTTGGTATGACGATGTGTTCTTCCTCACTTATTGTACACAAAACTAGACTATGTTGGTCTTGATACTGTGTTATTCATTC]

[+] EMBL AK073071             [CTCCATCGCGGCTTCCGGAGTTCCACCGCCGCGCTCTTCCCCCATCGGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGAAGCGAAGGTGAGTGTACATGTGTTAGGGTGAACTCCCAGACGCGGCCGCTCAACGGAGAGGGAAGCGATTTTCTGGGGGACAGGGGGTTTATTGGTCTGCATTGGATATCAATCAGGGGTGTAGCGTCTGCATTCATTCACTCGAACAAAGAAGAGGGTTTGTGCCTGATCAAAATTGCGCACAAAGAATAAGAGGTTCTTGGTTAGGTTTTGTACCTGATCCACACAGATTTGTTGAGTGGCAAAAAGGGCCAAGAAAATGGGTGTGGTGACAAGGGCCAAGAAGAGGAAGCTGGAGGAGGAATCCAGCAACCCACATCTGGCGCCCGGAGGAGGAGAAGACCTGATAAACCGCCTCCCAGATGATATCCTCATCGGCATCATCACCATCCTCCCCGGCAAGGATGCGGCCCGCACCCAGGTGCTCTCGCGGCGGTGGCGCCCCCTATGGCGATCCGCGCCTCTCAATCTTGAGGCCAGGGTCAATGGTGGCAGAATAGCTAAGGATGTGGCCACCATCCGCAGCACGCTGCGAACCCACAAGGGTCCTGTCTGCCGATTCTCTGTCAGCTGGACCTTTGACTACAACCACTTTCCGGTCGTTGATTCCTTGCTTGGATCGCCTAGGCTTGACAACCTACAGGAGTTTGAACTTTTCTATCATTATAATTGCTCTCGCTATCCTCCAGTTCCGCGGTCTGTACTCCGTCTCTCGCCTACTCTACGTGTTCTCTGGATTAGTGGAACATGTGACACGCTTCTGTTTCCCATGGAGACTGCTTATTTCCCACACCTTATGCAGCTCACCCTATCCAATGTGAACATCTCAGATAGCACTCTCCATGCTCTTCTGTCACAATGCCCTGTCTTGGAGAGCTTGGTGCTGGCTGGAACAGGGGCTGTCGTCGTCTCCGGATCAGCTCCTTGACCCTTCGGAGCCTTGGTGTGTCAAATGATACCCGAAAAGATGAAAAGCTGGAGGAAGTCATTGTTGAGGATGCCCCACTCCTGGAAAGGCTTACCCCACACACTATATGGCAGGGTGACTTTGTTATTCGGGTTATTCAGGCACCGAAACTGAAGACATTGGGCTATCTAAGCCATAAAATTACCACACTTGAGCTTGGAACCATGGTTTTCCAGAAGATGGTACCTGTTAGTCTGTCCAATGTGATGCGCAGTGTGAAGATTTTAGCCCTTGACACCACTCCTGATCTGGATGTTGTTATTGACTTCATAAAATGCTTTCCATGCGTAGAAAAGCTATACATTGTGGCATTCAATCAGGGGAACTTAAAGAATATACGGCGAAATGTTTCACTTGAGTGCTTTGATCTACATCTCAAGATGGTGGAATTTATAAACTATCAGGGAAATATGTTAGATTTGAACTTCATCAGGTTCTTTGTGTTAAATGCTCGAGTGCTAGAATGTATCAAGCTTGTAGCCCGTCGTGACAAATGTGAAGCAAAATGGATTGAAAAACAAAATCAGAAGCTACAGCTTTATGGCAGAGCTTCACGAAGAGTTACATTTGATTTTCAGGCTGATTATGGGGTGGATAGTTTGGTACACATGAAGCACATCAGTGATTTGACTACAGATGATCCCTTTGATAGATCATTTTGTAGATGCCGTGATGAGGAAATATATTAGTTCATTTGAAGCTGTTTATCAGTCATATACTTTGGTAAGTATCAAGTGCATGTTTAGTTTACATGCCTGAAATATCTTATTTTGGCATATTTTGTTGCAAGAATGGAATATGTATTTTGCCAAAGAAGTTGCATTGCATTGATCTATTCTAGTATTTTTACTCTTTCTGTTTGGTATGACGATGTGTTCTTCCTCACTTATTGTACACAAAACTAGACTATGTTGGTCTTGATACTGTGTTATTCATTC]




>consensus_5890#0
CTCCATCGCGGCTTCCGGAGTTCCACCGCCGCGCTCTTCCCCCATCGGCGGCGGCGGCGG
CGGCGGCGGAGGAGGAGAAGCGAAGGTGAGTGTACATGTGTTAGGGTGAACTCCCAGACG
CGGCCGCTCAACGGAGAGGGAAGCGATTTTCTGGGGGACAGGGGGTTTATTGGTCTGCAT
TGGATATCAATCAGGGGTGTAGCGTCTGCATTCATTCACTCGAACAAAGAAGAGGGTTTG
TGCCTGATCAAAATTGCGCACAAAGAATAAGAGGTTCTTGGTTAGGTTTTGTACCTGATC
CACACAGATTTGTTGAGTGGCAAAAAGGGCCAAGAAAATGGGTGTGGTGACAAGGGCCAA
GAAGAGGAAGCTGGAGGAGGAATCCAGCAACCCACATCTGGCGCCCGGAGGAGGAGAAGA
CCTGATAAACCGCCTCCCAGATGATATCCTCATCGGCATCATCACCATCCTCCCCGGCAA
GGATGCGGCCCGCACCCAGGTGCTCTCGCGGCGGTGGCGCCCCCTATGGCGATCCGCGCC
TCTCAATCTTGAGGCCAGGGTCAATGGTGGCAGAATAGCTAAGGATGTGGCCACCATCCG
CAGCACGCTGCGAACCCACAAGGGTCCTGTCTGCCGATTCTCTGTCAGCTGGACCTTTGA
CTACAACCACTTTCCGGTCGTTGATTCCTTGCTTGGATCGCCTAGGCTTGACAACCTACA
GGAGTTTGAACTTTTCTATCATTATAATTGCTCTCGCTATCCTCCAGTTCCGCGGTCTGT
ACTCCGTCTCTCGCCTACTCTACGTGTTCTCTGGATTAGTGGAACATGTGACACGCTTCT
GTTTCCCATGGAGACTGCTTATTTCCCACACCTTATGCAGCTCACCCTATCCAATGTGAA
CATCTCAGATAGCACTCTCCATGCTCTTCTGTCACAATGCCCTGTCTTGGAGAGCTTGGT
GCTGGCTGGAACAGGGGCTGTCGTCGTCTCCGGATCAGCTCCTTGACCCTTCGGAGCCTT
GGTGTGTCAAATGATACCCGAAAAGATGAAAAGCTGGAGGAAGTCATTGTTGAGGATGCC
CCACTCCTGGAAAGGCTTACCCCACACACTATATGGCAGGGTGACTTTGTTATTCGGGTT
ATTCAGGCACCGAAACTGAAGACATTGGGCTATCTAAGCCATAAAATTACCACACTTGAG
CTTGGAACCATGGTTTTCCAGAAGATGGTACCTGTTAGTCTGTCCAATGTGATGCGCAGT
GTGAAGATTTTAGCCCTTGACACCACTCCTGATCTGGATGTTGTTATTGACTTCATAAAA
TGCTTTCCATGCGTAGAAAAGCTATACATTGTGGCATTCAATCAGGGGAACTTAAAGAAT
ATACGGCGAAATGTTTCACTTGAGTGCTTTGATCTACATCTCAAGATGGTGGAATTTATA
AACTATCAGGGAAATATGTTAGATTTGAACTTCATCAGGTTCTTTGTGTTAAATGCTCGA
GTGCTAGAATGTATCAAGCTTGTAGCCCGTCGTGACAAATGTGAAGCAAAATGGATTGAA
AAACAAAATCAGAAGCTACAGCTTTATGGCAGAGCTTCACGAAGAGTTACATTTGATTTT
CAGGCTGATTATGGGGTGGATAGTTTGGTACACATGAAGCACATCAGTGATTTGACTACA
GATGATCCCTTTGATAGATCATTTTGTAGATGCCGTGATGAGGAAATATATTAGTTCATT
TGAAGCTGTTTATCAGTCATATACTTTGGTAAGTATCAAGTGCATGTTTAGTTTACATGC
CTGAAATATCTTATTTTGGCATATTTTGTTGCAAGAATGGAATATGTATTTTGCCAAAGA
AGTTGCATTGCATTGATCTATTCTAGTATTTTTACTCTTTCTGTTTGGTATGACGATGTG
TTCTTCCTCACTTATTGTACACAAAACTAGACTATGTTGGTCTTGATACTGTGTTATTCA
TTC

consensusID : consensus_5890#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [GGGATTTATTAACTATCATGGAAACTTATCAGATTTGAACTTTATCAAGTTCTTCCGGTTAAATGCTCAAGTGCTAGAATGTATAAAGTTTGTAGCCTGTCGTGACAAATGTGATGCAAAATGGATTAAAACCCAACATCAGAGGCTCCAACTTTATTCCAGAGCTTCACGAGCCGTTACACTTGATTTTCAAGCTGATTATGGGGTGGATAGTTTGGTACACGTGAAGCACATCAGTGATTTGATTACAGATGATCCCTTTGATAGATCGTTCTGTAGATGCCGTGATGAGGAAATATGAATTCCTTTGAAGCTGTTTATCAGTTGTATACTTTGGTGTATGGCCATATTGTCATATTGATATTGCCAGGCAGAAAAGACTGCTACTGCTACGGAGACAACCGAGTGCTGTTTTGTATTCTGTTAGACCCAATGCCCCCTTTTGGACAATTCACTGGGGATTTAAGTTGTGACATTATTGTACTCTATATATAGTAAGTAAGTAAGTTTGTGTTTTCTCTCAAATCCTGTGGCCATGCTAGGACTCATGTTTAGACTGGGAATAACCCCTTAATGATCAGTAGTGGGTAGTTTTAAGTTGCTTTTATGGACAACTTAGTGTATGAATTTGATGGATTAGTGCGTTAAATACTATCGGTTCAACGAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761757             [GGGATTTATTAACTATCATGGAAACTTATCAGATTTGAACTTTATCAAGTTCTTCCGGTTAAATGCTCAAGTGCTAGAATGTATAAAGTTTGTAGCCTGTCGTGACAAATGTGATGCAAAATGGATTAAAACCCAACATCAGAGGCTCCAACTTTATTCCAGAGCTTCACGAGCCGTTACACTTGATTTTCAAGCTGATTATGGGGTGGATAGTTTGGTACACGTGAAGCACATCAGTGATTTGATTACAGATGATCCCTTTGATAGATCGTTCTGTAGATGCCGTGATGAGGAAATATGAATTCCTTTGAAGCTGTTTATCAGTTGTATACTTTGGTGTATGGCCATATTGTCATATTGATATTGCCAGGCAGAAAAGACTGCTACTGCTACGGAGACAACCGAGTGCTGTTTTGTATTCTGTTAGACCCAATGCCCCCTTTTGGACAATTCACTGGGGATTTAAGTTGTGACATTATTGTACTCTATATATAGTAAGTAAGTAAGTTTGTGTTTTCTCTCAAATCCTGTGGCCATGCTAGGACTCATGTTTAGACTGGGAATAACCCCTTAATGATCAGTAGTGGGTAGTTTTAAGTTGCTTTTATGGACAACTTAGTGTATGAATTTGATGGATTAGTGCGTTAAATACTATCGGTTCAACGAAAAAAAAAAAAAAAAAA]




>consensus_5890#1
GGGATTTATTAACTATCATGGAAACTTATCAGATTTGAACTTTATCAAGTTCTTCCGGTT
AAATGCTCAAGTGCTAGAATGTATAAAGTTTGTAGCCTGTCGTGACAAATGTGATGCAAA
ATGGATTAAAACCCAACATCAGAGGCTCCAACTTTATTCCAGAGCTTCACGAGCCGTTAC
ACTTGATTTTCAAGCTGATTATGGGGTGGATAGTTTGGTACACGTGAAGCACATCAGTGA
TTTGATTACAGATGATCCCTTTGATAGATCGTTCTGTAGATGCCGTGATGAGGAAATATG
AATTCCTTTGAAGCTGTTTATCAGTTGTATACTTTGGTGTATGGCCATATTGTCATATTG
ATATTGCCAGGCAGAAAAGACTGCTACTGCTACGGAGACAACCGAGTGCTGTTTTGTATT
CTGTTAGACCCAATGCCCCCTTTTGGACAATTCACTGGGGATTTAAGTTGTGACATTATT
GTACTCTATATATAGTAAGTAAGTAAGTTTGTGTTTTCTCTCAAATCCTGTGGCCATGCT
AGGACTCATGTTTAGACTGGGAATAACCCCTTAATGATCAGTAGTGGGTAGTTTTAAGTT
GCTTTTATGGACAACTTAGTGTATGAATTTGATGGATTAGTGCGTTAAATACTATCGGTT
CAACGAAAAAAAAAAAAAAAAAA

consensusID : consensus_5890#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [ATTAAATCAGGAGAACTTCAAGAATGTACGGCGATATGTTTCACTTGAGTGCCTTGATCTACATCTCAAGATGGTGGAATTTATTAACTATCATGGAAACTTATCAGATTTGAACTTTATCAAGTTCTTCGTGTTAAATGCTCAAGTGCTAGAATGTATAAAGTTTGTAGCCTGTCGTGACAAATGTGATGCAAAATGGATTAAAACCCAACATCAGAGGCTACAACTTTATTCCAGAGCTTCACGAGCCGTTACACTTGATTTTCAAGCTGATTATGGGGTGGATAGTTTGGTACACGTGAAGCACATCAGTGATTTGATTACAGATGATCCCTTTGATAGATCGTTCTGTAGATGCCGTGATGAGGAAATATGAATTCCTTTGAAGCTGTTTATCAGTTGTATACTTTGGTGTATGGTCATATTGTCATATTGATATTGCCAGGCAGAAAAGACTGCTACTGCTACGGAGACAACCGAGTGCTGTTTTGTATTCTGTTAGACCCAATGCCACCTTTTGGACAATTCACTGGGGATTTAAGTTGTGACATTATTGTACTCTATATATAGTAAGTAAGTTTGTGTTTTCTCTCAAATCCTGTGGCCATGCTAGGACTCATGTTTAGACTGGGAATAACCACTTAATGATCAGTAGTGGGTAAAAAAAAAAAAAAAAA]

[-] EMBL CA763083             [ATTAAATCAGGAGAACTTCAAGAATGTACGGCGATATGTTTCACTTGAGTGCCTTGATCTACATCTCAAGATGGTGGAATTTATTAACTATCATGGAAACTTATCAGATTTGAACTTTATCAAGTTCTTCGTGTTAAATGCTCAAGTGCTAGAATGTATAAAGTTTGTAGCCTGTCGTGACAAATGTGATGCAAAATGGATTAAAACCCAACATCAGAGGCTACAACTTTATTCCAGAGCTTCACGAGCCGTTACACTTGATTTTCAAGCTGATTATGGGGTGGATAGTTTGGTACACGTGAAGCACATCAGTGATTTGATTACAGATGATCCCTTTGATAGATCGTTCTGTAGATGCCGTGATGAGGAAATATGAATTCCTTTGAAGCTGTTTATCAGTTGTATACTTTGGTGTATGGTCATATTGTCATATTGATATTGCCAGGCAGAAAAGACTGCTACTGCTACGGAGACAACCGAGTGCTGTTTTGTATTCTGTTAGACCCAATGCCACCTTTTGGACAATTCACTGGGGATTTAAGTTGTGACATTATTGTACTCTATATATAGTAAGTAAGTTTGTGTTTTCTCTCAAATCCTGTGGCCATGCTAGGACTCATGTTTAGACTGGGAATAACCACTTAATGATCAGTAGTGGGTAAAAAAAAAAAAAAAAA]




>consensus_5890#2
ATTAAATCAGGAGAACTTCAAGAATGTACGGCGATATGTTTCACTTGAGTGCCTTGATCT
ACATCTCAAGATGGTGGAATTTATTAACTATCATGGAAACTTATCAGATTTGAACTTTAT
CAAGTTCTTCGTGTTAAATGCTCAAGTGCTAGAATGTATAAAGTTTGTAGCCTGTCGTGA
CAAATGTGATGCAAAATGGATTAAAACCCAACATCAGAGGCTACAACTTTATTCCAGAGC
TTCACGAGCCGTTACACTTGATTTTCAAGCTGATTATGGGGTGGATAGTTTGGTACACGT
GAAGCACATCAGTGATTTGATTACAGATGATCCCTTTGATAGATCGTTCTGTAGATGCCG
TGATGAGGAAATATGAATTCCTTTGAAGCTGTTTATCAGTTGTATACTTTGGTGTATGGT
CATATTGTCATATTGATATTGCCAGGCAGAAAAGACTGCTACTGCTACGGAGACAACCGA
GTGCTGTTTTGTATTCTGTTAGACCCAATGCCACCTTTTGGACAATTCACTGGGGATTTA
AGTTGTGACATTATTGTACTCTATATATAGTAAGTAAGTTTGTGTTTTCTCTCAAATCCT
GTGGCCATGCTAGGACTCATGTTTAGACTGGGAATAACCACTTAATGATCAGTAGTGGGT
AAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      CTCCATCGCGGCTTCCGGAGTTCCACCGCCGCGCTCTTCCCCCATCGGCGGCGGCGGCGG 60
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      CGGCGGCGGAGGAGGAGAAGCGAAGGTGAGTGTACATGTGTTAGGGTGAACTCCCAGACG 120
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      CGGCCGCTCAACGGAGAGGGAAGCGATTTTCTGGGGGACAGGGGGTTTATTGGTCTGCAT 180
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      TGGATATCAATCAGGGGTGTAGCGTCTGCATTCATTCACTCGAACAAAGAAGAGGGTTTG 240
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      TGCCTGATCAAAATTGCGCACAAAGAATAAGAGGTTCTTGGTTAGGTTTTGTACCTGATC 300
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      CACACAGATTTGTTGAGTGGCAAAAAGGGCCAAGAAAATGGGTGTGGTGACAAGGGCCAA 360
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      GAAGAGGAAGCTGGAGGAGGAATCCAGCAACCCACATCTGGCGCCCGGAGGAGGAGAAGA 420
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      CCTGATAAACCGCCTCCCAGATGATATCCTCATCGGCATCATCACCATCCTCCCCGGCAA 480
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      GGATGCGGCCCGCACCCAGGTGCTCTCGCGGCGGTGGCGCCCCCTATGGCGATCCGCGCC 540
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      TCTCAATCTTGAGGCCAGGGTCAATGGTGGCAGAATAGCTAAGGATGTGGCCACCATCCG 600
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      CAGCACGCTGCGAACCCACAAGGGTCCTGTCTGCCGATTCTCTGTCAGCTGGACCTTTGA 660
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      CTACAACCACTTTCCGGTCGTTGATTCCTTGCTTGGATCGCCTAGGCTTGACAACCTACA 720
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      GGAGTTTGAACTTTTCTATCATTATAATTGCTCTCGCTATCCTCCAGTTCCGCGGTCTGT 780
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      ACTCCGTCTCTCGCCTACTCTACGTGTTCTCTGGATTAGTGGAACATGTGACACGCTTCT 840
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      GTTTCCCATGGAGACTGCTTATTTCCCACACCTTATGCAGCTCACCCTATCCAATGTGAA 900
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      CATCTCAGATAGCACTCTCCATGCTCTTCTGTCACAATGCCCTGTCTTGGAGAGCTTGGT 960
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      GCTGGCTGGAACAGGGGCTGTCGTCGTCTCCGGATCAGCTCCTTGACCCTTCGGAGCCTT 1020
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      GGTGTGTCAAATGATACCCGAAAAGATGAAAAGCTGGAGGAAGTCATTGTTGAGGATGCC 1080
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      CCACTCCTGGAAAGGCTTACCCCACACACTATATGGCAGGGTGACTTTGTTATTCGGGTT 1140
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      ATTCAGGCACCGAAACTGAAGACATTGGGCTATCTAAGCCATAAAATTACCACACTTGAG 1200
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      CTTGGAACCATGGTTTTCCAGAAGATGGTACCTGTTAGTCTGTCCAATGTGATGCGCAGT 1260
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      ------------------------------------------------------------
consensus_5890#0      GTGAAGATTTTAGCCCTTGACACCACTCCTGATCTGGATGTTGTTATTGACTTCATAAAA 1320
                                                                                  

consensus_5890#1      ------------------------------------------------------------
consensus_5890#2      -----------------------------------ATTAAATCAGGAGAACTTCAAGAAT 25
consensus_5890#0      TGCTTTCCATGCGTAGAAAAGCTATACATTGTGGCATTCAATCAGGGGAACTTAAAGAAT 1380
                                                                                  

consensus_5890#1      --------------------------------------------------GGGATTTATT 10
consensus_5890#2      GTACGGCGATATGTTTCACTTGAGTGCCTTGATCTACATCTCAAGATGGTGGAATTTATT 85
consensus_5890#0      ATACGGCGAAATGTTTCACTTGAGTGCTTTGATCTACATCTCAAGATGGTGGAATTTATA 1440
                                                                        ** ****** 

consensus_5890#1      AACTATCATGGAAACTTATCAGATTTGAACTTTATCAAGTTCTTCCGGTTAAATGCTCAA 70
consensus_5890#2      AACTATCATGGAAACTTATCAGATTTGAACTTTATCAAGTTCTTCGTGTTAAATGCTCAA 145
consensus_5890#0      AACTATCAGGGAAATATGTTAGATTTGAACTTCATCAGGTTCTTTGTGTTAAATGCTCGA 1500
                      ******** *****  * * ************ **** ******   *********** *

consensus_5890#1      GTGCTAGAATGTATAAAGTTTGTAGCCTGTCGTGACAAATGTGATGCAAAATGGATTAAA 130
consensus_5890#2      GTGCTAGAATGTATAAAGTTTGTAGCCTGTCGTGACAAATGTGATGCAAAATGGATTAAA 205
consensus_5890#0      GTGCTAGAATGTATCAAGCTTGTAGCCCGTCGTGACAAATGTGAAGCAAAATGGATTGAA 1560
                      ************** *** ******** **************** ************ **

consensus_5890#1      ACCCAACATCAGAGGCTCCAACTTTATTCCAGAGCTTCACGAGCCGTTACACTTGATTTT 190
consensus_5890#2      ACCCAACATCAGAGGCTACAACTTTATTCCAGAGCTTCACGAGCCGTTACACTTGATTTT 265
consensus_5890#0      AAACAAAATCAGAAGCTACAGCTTTATGGCAGAGCTTCACGAAGAGTTACATTTGATTTT 1620
                      *  *** ****** *** ** ******  *************   ****** ********

consensus_5890#1      CAAGCTGATTATGGGGTGGATAGTTTGGTACACGTGAAGCACATCAGTGATTTGATTACA 250
consensus_5890#2      CAAGCTGATTATGGGGTGGATAGTTTGGTACACGTGAAGCACATCAGTGATTTGATTACA 325
consensus_5890#0      CAGGCTGATTATGGGGTGGATAGTTTGGTACACATGAAGCACATCAGTGATTTGACTACA 1680
                      ** ****************************** ********************* ****

consensus_5890#1      GATGATCCCTTTGATAGATCGTTCTGTAGATGCCGTGATGAGGAAATATG--AATTCCTT 308
consensus_5890#2      GATGATCCCTTTGATAGATCGTTCTGTAGATGCCGTGATGAGGAAATATG--AATTCCTT 383
consensus_5890#0      GATGATCCCTTTGATAGATCATTTTGTAGATGCCGTGATGAGGAAATATATTAGTTCATT 1740
                      ******************** ** *************************   * *** **

consensus_5890#1      TGAAGCTGTTTATCAGTTGTATACTTTGGTGTATGGCCATATTGTCATATTGATATTGCC 368
consensus_5890#2      TGAAGCTGTTTATCAGTTGTATACTTTGGTGTATGGTCATATTGTCATATTGATATTGCC 443
consensus_5890#0      TGAAGCTGTTTATCAGTCATATACTTTGGTAAGTA-TCAAGTG--CATGTTTAGTTTACA 1797
                      *****************  ***********   *   **  *   *** ** *  ** * 

consensus_5890#1      AGGCAGAAAAGACTGCTACTGCTACGGAGACAACCGAGTGCTGTTT-TGTATTCTGTTAG 427
consensus_5890#2      AGGCAGAAAAGACTGCTACTGCTACGGAGACAACCGAGTGCTGTTT-TGTATTCTGTTAG 502
consensus_5890#0      TGCCTGAAATATCTTATTTTGGCATATTTTGTTGCAAGAATGGAATATGTATTTTGCCAA 1857
                       * * ****   **  *  **  *          * **    *  * ****** **  * 

consensus_5890#1      ACCCAATGCCCCCTTTTGGACAATTCACTGGGGATTTAAGTTGTGACATTATTGTACTCT 487
consensus_5890#2      ACCCAATGCCACCTTTTGGACAATTCACTGGGGATTTAAGTTGTGACATTATTGTACTCT 562
consensus_5890#0      AGAAGTTGC------------ATTGCATTG---ATCTA--TTCTAGTATTTTTACTCTTT 1900
                      *     ***            * * ** **   ** **  ** *   *** **   ** *

consensus_5890#1      ATATATAGTAAGTAAGTAAGTTTGTGTTTTCTCTCAAATCCTGTGGCCATGCTAGGACTC 547
consensus_5890#2      ATATATAGTAAGTAAGT----TTGTGTTTTCTCTCAAATCCTGTGGCCATGCTAGGACTC 618
consensus_5890#0      CTGTTTGGTATGACGAT------GTGTTCTTCCTCACTTATTGTACACAAAACTAGACT- 1953
                       * * * *** *    *      ***** *  ****  *  ***   **      **** 

consensus_5890#1      ATGTTTAGACTGGGAATAACCCCTTAATGATCAGTAGTGGGTAGTTTTAAGTTGCTTTTA 607
consensus_5890#2      ATGTTTAGACTGGGAATAACCACTTAATGATCAGTAGTGGGTAAAAAAAAA--------A 670
consensus_5890#0      ATGTTGGTCTTGATACTGTGTTATTCATTC------------------------------ 1983
                      *****     **  * *      ** **                                

consensus_5890#1      TGGACAACTTAGTGTATGAATTTGATGGATTAGTGCGTTAAATACTATCGGTTCAACGAA 667
consensus_5890#2      AAAAAAA----------------------------------------------------- 677
consensus_5890#0      ------------------------------------------------------------
                                                                                  

consensus_5890#1      AAAAAAAAAAAAAAAA 683
consensus_5890#2      ----------------
consensus_5890#0      ----------------