These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence [TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCATTTCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCAAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCACCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATTATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAACTTGGCGGAAAGG] [+] EMBL CF314947 [TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCATTTCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCAAGCAAAAGGAAC ] [+] EMBL CF318713 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATTTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAACACTTGACCTCCTTCACCCCATGAAAAAAGTAAAGGAAGGTTGGGTCGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATTATGCATGCTCTCACCAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAACTTGGCGGAAAGG] consensusID : consensus_5903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [CTGTCAACGATACGCTACGTAACGGCATGAAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCTTCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTACACCAAAAATACGGGGGACTGCATAGATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAGCACTTGAACTCCTCAGTCCAT] [+] EMBL CF321398 [CTGTCAACGATACGCTACGTAACGGCATGAAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCTTCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGACAACCATAGACTACACCAAAAATACGGGGGACTGCATAGATAAAACATCAGTGTCGAGCAAAAGGAACCGCTCAGCACTTGAACTCCTCAGTCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5903#0 ------------------------TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36 consensus_5903#1 CTGTCAACGATACGCTACGTAACGGCATGAAGTGTTTTTTTTTTTTTTTTTTTTTTTTTT 60 * ************************** consensus_5903#0 TTTTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCATTTCAACATCC 96 consensus_5903#1 TTCTTTTTTTTTTAATCCAATAATCCGGAGGTTTTTTTAAAAGGACTCTTCTCAACATCC 120 ** ********************************************* * ********* consensus_5903#0 ATAACAAGCAAACGATAGTTGTTTCCGACCCCAACATTAAACCATTTCGAGTCAACTGAC 156 consensus_5903#1 ATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAAACCATATCGAGTCAACTGAC 180 ***************************** *************** ************** consensus_5903#0 AACCATAGACTAAACCAAAAATACGGGGGACTGCATAAATAAAACATCAGTGTCAAGCAA 216 consensus_5903#1 AACCATAGACTACACCAAAAATACGGGGGACTGCATAGATAAAACATCAGTGTCGAGCAA 240 ************ ************************ **************** ***** consensus_5903#0 AAGGAACCGCTCAACACTTGACCTCCTTCACCCCATGAAAAAAGTAAAGGAAGGTTGGGT 276 consensus_5903#1 AAGGAACCGCTCAGCACTTGAACTCCT-CAGTCCAT------------------------ 275 ************* ******* ***** ** **** consensus_5903#0 CGGGGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATTATGCATGCTCTCAC 336 consensus_5903#1 ------------------------------------------------------------ consensus_5903#0 CAACAAAAAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGGGGCACCCTCAATGT 396 consensus_5903#1 ------------------------------------------------------------ consensus_5903#0 TCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAACTTGGCGGAAAGG 443 consensus_5903#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||