These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1745 fasta sequence [ATGAAGATAAAAAGGTTAGGACTGGAATTTATTGTAAGAGAGATTATTGACCAATACAACACCTTAAGAAAACAGTTGAACAATGCGATCCCTTCAGTTTCTATTTCGAACAGCAAATGTTCTGTAGGCAATGAGTGTGTCAAGAATCAGACCTGTTGCGTCACTATGGTAGTACAGGTGGAAATTAACTCCATGTCGCAATTGGACGTTATCAAGGAACGGGTGATTCCAAGCATCCTGGCCACACTGTTGAAAGGATTTTTGGAATTTAAGAATGTTAAGGTGCAATGTCAAGAGGATAATGAACTTGTTCTGAAAGTCGGTATGTCTGAGCATTGCAAGAGTGGGAAGTTCTGGGCTACCCTACAAAATGCTTGCATCCCAATAATGGAGTTGATTGATTGGGAGCGGAGCCGACCAGAGAGAGTATATGATAATTTCTGCTCATATGGCATAGACTCAGCATGGAAATTCTTTGTCGAATCTTTAAGATCCACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTGGTTGTGGCAGACTGCCTATCTGTGAGTGGGCAGTTCCATGGGCTAAGCAGTCAAGGTTTAAAGCAGCAAAGGACTTGGTTATCAATCTCCTCTCCATTTTCTGAAGCATGCTTTTCTAGGCCTGCACACAGTTTTATAAATGCTGCAAAGCGGGATTCAGTGGACAATCTTTCTGGTACTCTAGATGCAATTGCCTGGGGCAAAGAACCTTGTGCAGGGTCGTCAGGTCCTTTCAAGATTCTATATTCTGGGAAGTCACATGAGACAAAACAAAATGAGCACATATATGACTTTCTACATAACCCTGAAGTTCAGGCTCTTGAAAAGAATGTAATGGATACCTACAGAAAAAGGACTGAAAAAACTTCCAAGCGGAGATCAGCACTCAATTCTGAAGGCAATGCTACCATCAATGGTGGTGCCATATC-TTTAATCAGAAGTTTCTTAATGCTAAAGTTGGTATATGGGAGAACATCATTGACATGCGCACTTCCTTGCAAAACATGCTTCGGGAGTACACATTAAATGAAGTTGTCACAGAACAAGATAAATCATGCTTAATGGAGGCCTTGAAATTTCATCCCAGAGGGTATGACAAGATTGGTGTGGGAATAAGAGAAATCAAGATCGGAGTGAATCCTGGTCACCCGAGCTCAAGGTGCTTCATTGTACTAAGGAATGATGATACTACTGCAGACTTCTCTTACAACAAGTGTGTCCTTGGTGCTGCAAATTCTATCTCACCTGAACTTGGAAGTTATATAGAGAACAGACGATCTAATAGAGCAGTTCGGCCACATCAGTTGTAGGGTGAGCCCGTCAATGCTTTACGAACAAGTATCAGAAGCAATTTTCATGGATAACGATAGATTGGCGAATGTTGCTTCTTGGCTGCTTCGGTTAACGGGGATGGCAGGGTCTTACACTCTACAGGGATGTGTGTCAACTCAACTCAACTCACTCGAGCTACAGATGGCCGACCTGAGCCTTAGTGTAGGTTTCATGCCTTCACTTCTGTAGCACATACATCTATAGTAACCCTTAAGTTTGTTTGGACAAGAGGTAGTGGCACAAAGTGCAATAGGTGTCGTCGTTATCCTTGCATCAATTGTATGCGGAAATGATCCATATTCTAAATGAGAATCACAAAATTTTGGTCGTTGAATTTAATCTAGAATGTGATTTATTCGTGAAAAAAAAAAAAA] [+] EMBL AK064589 [ATGAAGATAAAAAGGTTAGGACTGGAATTTATTGTAAGAGAGATTATTGACCAATACAACACCTTAAGAAAACAGTTGAACAATGCGATCCCTTCAGTTTCTATTTCGAACAGCAAATGTTCTGTAGGCAATGAGTGTGTCAAGAATCAGACCTGTTGCGTCACTATGGTAGTACAGGTGGAAATTAACTCCATGTCGCAATTGGACGTTATCAAGGAACGGGTGATTCCAAGCATCCTGGCCACACTGTTGAAAGGATTTTTGGAATTTAAGAATGTTAAGGTGCAATGTCAAGAGGATAATGAACTTGTTCTGAAAGTCGGTATGTCTGAGCATTGCAAGAGTGGGAAGTTCTGGGCTACCCTACAAAATGCTTGCATCCCAATAATGGAGTTGATTGATTGGGAGCGGAGCCGACCAGAGAGAGTATATGATAATTTCTGCTCATATGGCATAGACTCAGCATGGAAATTCTTTGTCGAATCTTTAAGATCCACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTGGTTGTGGCAGACTGCCTATCTGTGAGTGGGCAGTTCCATGGGCTAAGCAGTCAAGGTTTAAAGCAGCAAAGGACTTGGTTATCAATCTCCTCTCCATTTTCTGAAGCATGCTTTTCTAGGCCTGCACACAGTTTTATAAATGCTGCAAAGCGGGATTCAGTGGACAATCTTTCTGGTACTCTAGATGCAATTGCCTGGGGCAAAGAACCTTGTGCAGGGTCGTCAGGTCCTTTCAAGATTCTATATTCTGGGAAGTCACATGAGACAAAACAAAATGAGCACATATATGACTTTCTACATAACCCTGAAGTTCAGGCTCTTGAAAAGAATGTAATGGATACCTACAGAAAAAGGACTGAAAAAACTTCCAAGCGGAGATCAGCACTCAATTCTGAAGGCAATGCTACCATCAATGGTGGTGCCATATC TTTAATCAGAAGTTTCTTAATGCTAAAGTTGGTATATGGGAGAACATCATTGACATGCGCACTTCCTTGCAAAACATGCTTCGGGAGTACACATTAAATGAAGTTGTCACAGAACAAGATAAATCATGCTTAATGGAGGCCTTGAAATTTCATCCCAGAGGGTATGACAAGATTGGTGTGGGAATAAGAGAAATCAAGATCGGAGTGAATCCTGGTCACCCGAGCTCAAGGTGCTTCATTGTACTAAGGAATGATGATACTACTGCAGACTTCTCTTACAACAAGTGTGTCCTTGGTGCTGCAAATTCTATCTCACCTGAACTTGGAAGTTATATAGAGAACAGACGATCTAATAGAGCAGTTCGGCCACATCAGTTGTAGGGTGAGCCCGTCAATGCTTTACGAACAAGTATCAGAAGCAATTTTCATGGATAACGATAGATTGGCGAATGTTGCTTCTTGGCTGCTTCGGTTAACGGGGATGGCAGGGTCTTACACTCTACAGGGATGTGTGTCAACTCAACTCAACTCACTCGAGCTACAGATGGCCGACCTGAGCCTTAGTGTAGGTTTCATGCCTTCACTTCTGTAGCACATACATCTATAGTAACCCTTAAGTTTGTTTGGACAAGAGGTAGTGGCACAAAGTGCAATAGGTGTCGTCGTTATCCTTGCATCAATTGTATGCGGAAATGATCCATATTCTAAATGAGAATCACAAAATTTTGGTCGTTGAATTTAATCTAGAATGTGATTTATTCGTGAAAAAAAAAAAAA] [+] EMBL OSC19191 [ CTTTCTGGTACTCTAGATGCAATTGCCTGGGGCAAAGAACCTTGTGCAGGGTCGTCAGGTCCTTTCAAGATTCTATATTCTGGGAAGTCACATGAGACAAAACAAAATGAGCACATATATGACTTTCTACATAACCCTGAAGTTCAGGCTCTTGAAAAGAATGTAATGGATACCTACAGAAAAAGGACTGAAAAAACTTCCAAGCGGAGATCAGCACTCAATTCTGANGGCAATGCTACCATCAATGGTGGTGCCATATCTTTTAATCAGAAGTTTCTTAATGCTAAAGTTGGTATATGGGNGAACATCATTGACATGCGCACTTCCTTGCAAAACATGCTTCGGGGGTACACATTAAATGNAGTTGTCACAGGACAAGGTAAATCATGCTTAATGG GGGCTTG ANTTTCATCCCngt ] consensusID : consensus_5908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1378 fasta sequence [TTGGGAACGGAGCCGACCAGAGAGAGTATATGATATTTTCTGCTCATATGGCATAGACTCAGCATGGAAATACTTTGTTGAATCTTTAAGATCAACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTGGTTGTGGCAGACTGTCTGTCTATAAGTGGGCAGTTCCACGGGCTAAGCAGTCAAGGTTTAAAGCAACAAAGGGCTTGGTTATCAATCTCCTCGCCATTTTCGGAAGCATGCTTTTCTAGGCCTGCATATAGCTTTATAAATGCTGCAAAGCGAGATTCAGTGGACAATCTCTCTGGTGCTCTAGATGCAATTGCCAGGGGCAAAGAACCTTGTGCTGGGACATCAGGTCCTTTCAAGGTTCTATACTCCGGAAAGTCACAAAAGACAAAACAAAACAAGAATATCTATGACTTTCTACATAACCCCGAAGTTCAGGCTTTGGAAAAGAATTTTATGGATACCTACAAACAAAGGACTGAAAAACCTTCCAAGCAGAGATCAGCATTCAGTTCTAAAGGCAATGCTACCATCAATGGTGGTACCATATCTGTCAATCAGAAGTTTCTTGATTCTAAAGTTGGCATATGGGAGAACATCATTGACATGCGCACTTGCTTGCAAAATATGCTAAGAGAGTACACATTAAATGAAGTTGTCACGGAACAAGATAAATCATGCTTGATAGAGGCGTTGAAATTTCATCCTAGAGGATATGACAAGATTGGTGTGGGGATAAGAGAAATCAAGATTGGAGTGAATCCTGGTCACCCGAACTCAAGGTGCTTCATTGTACAAAGGAGTGACGATACTAGTGCAGATTTCTCTTACAACAAGTGTGTCCTTGGTGCTGCAAACTCTATCTCACCTGAACTTGGAAGTTATATTGAGAAGATACTATCTAATAGAGCAATTCGGCCACATCAGTTGTAGGGTGAGCTTTCAAATACTTTAGGAACAAGAAATCTTCAGAAGCAACTTAGGGTGCTCAATTTACCCAGATGACGATAGATATAGGTGAATGTTGTTTTTTGTCTTCTTCAGTTAACAGGGCTCAAAGGGCTCTGCAGGAATTAAGACAGGGTTGTGCGTCAACTCAACTCAACCAATCTAGGTATTAGCTCTTTTTTTTTTTTTCAAATTAGTGGAGCTACAGATGGCCGGCCTGAGCCTTAGTGGCCCACTGCCATTAGAGGGTTTACGGATACTGTAACCCTTCATTTTCTCTCCAAGGATAGGTAGTGGCACTTAGAAATGCAATAGGCGTTGTCGTTACCCTTTGCATCATCTGTCCTGTTGTAAAGCGAAAAACGAGGACTGATGATCCATATTCGAAATGAGAACTCCAAAATTTTGGTGGTT] [+] EMBL AK103018 [TTGGGAACGGAGCCGACCAGAGAGAGTATATGATATTTTCTGCTCATATGGCATAGACTCAGCATGGAAATACTTTGTTGAATCTTTAAGATCAACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTGGTTGTGGCAGACTGTCTGTCTATAAGTGGGCAGTTCCACGGGCTAAGCAGTCAAGGTTTAAAGCAACAAAGGGCTTGGTTATCAATCTCCTCGCCATTTTCGGAAGCATGCTTTTCTAGGCCTGCATATAGCTTTATAAATGCTGCAAAGCGAGATTCAGTGGACAATCTCTCTGGTGCTCTAGATGCAATTGCCAGGGGCAAAGAACCTTGTGCTGGGACATCAGGTCCTTTCAAGGTTCTATACTCCGGAAAGTCACAAAAGACAAAACAAAACAAGAATATCTATGACTTTCTACATAACCCCGAAGTTCAGGCTTTGGAAAAGAATTTTATGGATACCTACAAACAAAGGACTGAAAAACCTTCCAAGCAGAGATCAGCATTCAGTTCTAAAGGCAATGCTACCATCAATGGTGGTACCATATCTGTCAATCAGAAGTTTCTTGATTCTAAAGTTGGCATATGGGAGAACATCATTGACATGCGCACTTGCTTGCAAAATATGCTAAGAGAGTACACATTAAATGAAGTTGTCACGGAACAAGATAAATCATGCTTGATAGAGGCGTTGAAATTTCATCCTAGAGGATATGACAAGATTGGTGTGGGGATAAGAGAAATCAAGATTGGAGTGAATCCTGGTCACCCGAACTCAAGGTGCTTCATTGTACAAAGGAGTGACGATACTAGTGCAGATTTCTCTTACAACAAGTGTGTCCTTGGTGCTGCAAACTCTATCTCACCTGAACTTGGAAGTTATATTGAGAAGATACTATCTAATAGAGCAATTCGGCCACATCAGTTGTAGGGTGAGCTTTCAAATACTTTAGGAACAAGAAATCTTCAGAAGCAACTTAGGGTGCTCAATTTACCCAGATGACGATAGATATAGGTGAATGTTGTTTTTTGTCTTCTTCAGTTAACAGGGCTCAAAGGGCTCTGCAGGAATTAAGACAGGGTTGTGCGTCAACTCAACTCAACCAATCTAGGTATTAGCTCTTTTTTTTTTTTTCAAATTAGTGGAGCTACAGATGGCCGGCCTGAGCCTTAGTGGCCCACTGCCATTAGAGGGTTTACGGATACTGTAACCCTTCATTTTCTCTCCAAGGATAGGTAGTGGCACTTAGAAATGCAATAGGCGTTGTCGTTACCCTTTGCATCATCTGTCCTGTTGTAAAGCGAAAAACGAGGACTGATGATCCATATTCGAAATGAGAACTCCAAAATTTTGGTGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5908#0 ATGAAGATAAAAAGGTTAGGACTGGAATTTATTGTAAGAGAGATTATTGACCAATACAAC 60 consensus_5908#1 ------------------------------------------------------------ consensus_5908#0 ACCTTAAGAAAACAGTTGAACAATGCGATCCCTTCAGTTTCTATTTCGAACAGCAAATGT 120 consensus_5908#1 ------------------------------------------------------------ consensus_5908#0 TCTGTAGGCAATGAGTGTGTCAAGAATCAGACCTGTTGCGTCACTATGGTAGTACAGGTG 180 consensus_5908#1 ------------------------------------------------------------ consensus_5908#0 GAAATTAACTCCATGTCGCAATTGGACGTTATCAAGGAACGGGTGATTCCAAGCATCCTG 240 consensus_5908#1 ------------------------------------------------------------ consensus_5908#0 GCCACACTGTTGAAAGGATTTTTGGAATTTAAGAATGTTAAGGTGCAATGTCAAGAGGAT 300 consensus_5908#1 ------------------------------------------------------------ consensus_5908#0 AATGAACTTGTTCTGAAAGTCGGTATGTCTGAGCATTGCAAGAGTGGGAAGTTCTGGGCT 360 consensus_5908#1 ------------------------------------------------------------ consensus_5908#0 ACCCTACAAAATGCTTGCATCCCAATAATGGAGTTGATTGATTGGGAGCGGAGCCGACCA 420 consensus_5908#1 -----------------------------------------TTGGGAACGGAGCCGACCA 19 ****** ************ consensus_5908#0 GAGAGAGTATATGATAATTTCTGCTCATATGGCATAGACTCAGCATGGAAATTCTTTGTC 480 consensus_5908#1 GAGAGAGTATATGATATTTTCTGCTCATATGGCATAGACTCAGCATGGAAATACTTTGTT 79 **************** *********************************** ****** consensus_5908#0 GAATCTTTAAGATCCACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTG 540 consensus_5908#1 GAATCTTTAAGATCAACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTG 139 ************** ********************************************* consensus_5908#0 GTTGTGGCAGACTGCCTATCTGTGAGTGGGCAGTTCCATGGGCTAAGCAGTCAAGGTTTA 600 consensus_5908#1 GTTGTGGCAGACTGTCTGTCTATAAGTGGGCAGTTCCACGGGCTAAGCAGTCAAGGTTTA 199 ************** ** *** * ************** ********************* consensus_5908#0 AAGCAGCAAAGGACTTGGTTATCAATCTCCTCTCCATTTTCTGAAGCATGCTTTTCTAGG 660 consensus_5908#1 AAGCAACAAAGGGCTTGGTTATCAATCTCCTCGCCATTTTCGGAAGCATGCTTTTCTAGG 259 ***** ****** ******************* ******** ****************** consensus_5908#0 CCTGCACACAGTTTTATAAATGCTGCAAAGCGGGATTCAGTGGACAATCTTTCTGGTACT 720 consensus_5908#1 CCTGCATATAGCTTTATAAATGCTGCAAAGCGAGATTCAGTGGACAATCTCTCTGGTGCT 319 ****** * ** ******************** ***************** ****** ** consensus_5908#0 CTAGATGCAATTGCCTGGGGCAAAGAACCTTGTGCAGGGTCGTCAGGTCCTTTCAAGATT 780 consensus_5908#1 CTAGATGCAATTGCCAGGGGCAAAGAACCTTGTGCTGGGACATCAGGTCCTTTCAAGGTT 379 *************** ******************* *** * *************** ** consensus_5908#0 CTATATTCTGGGAAGTCACATGAGACAAAACAAAATGAGCACATATATGACTTTCTACAT 840 consensus_5908#1 CTATACTCCGGAAAGTCACAAAAGACAAAACAAAACAAGAATATCTATGACTTTCTACAT 439 ***** ** ** ******** ************* ** * ** *************** consensus_5908#0 AACCCTGAAGTTCAGGCTCTTGAAAAGAATGTAATGGATACCTACAGAAAAAGGACTGAA 900 consensus_5908#1 AACCCCGAAGTTCAGGCTTTGGAAAAGAATTTTATGGATACCTACAAACAAAGGACTGAA 499 ***** ************ * ********* * ************* * *********** consensus_5908#0 AAAACTTCCAAGCGGAGATCAGCACTCAATTCTGAAGGCAATGCTACCATCAATGGTGGT 960 consensus_5908#1 AAACCTTCCAAGCAGAGATCAGCATTCAGTTCTAAAGGCAATGCTACCATCAATGGTGGT 559 *** ********* ********** *** **** ************************** consensus_5908#0 GCCATATCT-TTAATCAGAAGTTTCTTAATGCTAAAGTTGGTATATGGGAGAACATCATT 1019 consensus_5908#1 ACCATATCTGTCAATCAGAAGTTTCTTGATTCTAAAGTTGGCATATGGGAGAACATCATT 619 ******** * *************** ** ********** ****************** consensus_5908#0 GACATGCGCACTTCCTTGCAAAACATGCTTCGGGAGTACACATTAAATGAAGTTGTCACA 1079 consensus_5908#1 GACATGCGCACTTGCTTGCAAAATATGCTAAGAGAGTACACATTAAATGAAGTTGTCACG 679 ************* ********* ***** * ************************** consensus_5908#0 GAACAAGATAAATCATGCTTAATGGAGGCCTTGAAATTTCATCCCAGAGGGTATGACAAG 1139 consensus_5908#1 GAACAAGATAAATCATGCTTGATAGAGGCGTTGAAATTTCATCCTAGAGGATATGACAAG 739 ******************** ** ***** ************** ***** ********* consensus_5908#0 ATTGGTGTGGGAATAAGAGAAATCAAGATCGGAGTGAATCCTGGTCACCCGAGCTCAAGG 1199 consensus_5908#1 ATTGGTGTGGGGATAAGAGAAATCAAGATTGGAGTGAATCCTGGTCACCCGAACTCAAGG 799 *********** ***************** ********************** ******* consensus_5908#0 TGCTTCATTGTACTAAGGAATGATGATACTACTGCAGACTTCTCTTACAACAAGTGTGTC 1259 consensus_5908#1 TGCTTCATTGTACAAAGGAGTGACGATACTAGTGCAGATTTCTCTTACAACAAGTGTGTC 859 ************* ***** *** ******* ****** ********************* consensus_5908#0 CTTGGTGCTGCAAATTCTATCTCACCTGAACTTGGAAGTTATATAGAGAACAGACGATCT 1319 consensus_5908#1 CTTGGTGCTGCAAACTCTATCTCACCTGAACTTGGAAGTTATATTGAGAAGATACTATCT 919 ************** ***************************** ***** * ** **** consensus_5908#0 AATAGAGCAGTTCGGCCACATCAGTTGTAGGGTGAGCCCGTCAATGCTTTACGAACAAGT 1379 consensus_5908#1 AATAGAGCAATTCGGCCACATCAGTTGTAGGGTGAGCTTTCAAATACTTTAGGAACAAGA 979 ********* *************************** *** ***** ******* consensus_5908#0 A----TCAGAAGCAA--------------TTTTCATGGATAACGATAGATT--GGCGAAT 1419 consensus_5908#1 AATCTTCAGAAGCAACTTAGGGTGCTCAATTTACCCAGATGACGATAGATATAGGTGAAT 1039 * ********** *** * *** ********* ** **** consensus_5908#0 GTTGCTTCTTGGCTGCTTCGGTTAACGGGGATGGCAGGGTCTTACA-----CTCTACAGG 1474 consensus_5908#1 GTTGTTTTTTGTCTTCTTCAGTTAACAGGGCTCAAAGGGCTCTGCAGGAATTAAGACAGG 1099 **** ** *** ** **** ****** *** * **** * ** ***** consensus_5908#0 GATGTGTGTCAACTCAACTCAAC-----------------------------------TC 1499 consensus_5908#1 GTTGTGCGTCAACTCAACTCAACCAATCTAGGTATTAGCTCTTTTTTTTTTTTTCAAATT 1159 * **** **************** * consensus_5908#0 ACTCGAGCTACAGATGGCCGACCTGAGCCTTAGTGTAGGTTTCATGCCTTCACTTCTGTA 1559 consensus_5908#1 AGTGGAGCTACAGATGGCCGGCCTGAGCCTTAGTG---GCCCACTGCCATTAG------A 1210 * * **************** ************** * **** * * * consensus_5908#0 GCACATACATCTATAGTAACCCTTAAGTTTGTTTG-GACAAGAGGTAGTGGCAC---AAA 1615 consensus_5908#1 GGGTTTACGGATACTGTAACCCTTCATTTTCTCTCCAAGGATAGGTAGTGGCACTTAGAA 1270 * *** ** ********* * *** * * * * ************ ** consensus_5908#0 GTGCAATAGGTGTCGTCGTTATCCTT-GCATCAATTGT---------ATGCGGAAA---- 1661 consensus_5908#1 ATGCAATAGGCGTTGTCGTTACCCTTTGCATCATCTGTCCTGTTGTAAAGCGAAAAACGA 1330 ********* ** ******* **** ****** *** * *** *** consensus_5908#0 -------TGATCCATATTCTAAATGAGAATCACAAAATTTTGGTCGTTGAATTTAATCTA 1714 consensus_5908#1 GGACTGATGATCCATATTCGAAATGAGAACTCCAAAATTTTGGTGGTT------------ 1378 ************ ********* ************ *** consensus_5908#0 GAATGTGATTTATTCGTGAAAAAAAAAAAAA 1745 consensus_5908#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||