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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1745 fasta sequence
[ATGAAGATAAAAAGGTTAGGACTGGAATTTATTGTAAGAGAGATTATTGACCAATACAACACCTTAAGAAAACAGTTGAACAATGCGATCCCTTCAGTTTCTATTTCGAACAGCAAATGTTCTGTAGGCAATGAGTGTGTCAAGAATCAGACCTGTTGCGTCACTATGGTAGTACAGGTGGAAATTAACTCCATGTCGCAATTGGACGTTATCAAGGAACGGGTGATTCCAAGCATCCTGGCCACACTGTTGAAAGGATTTTTGGAATTTAAGAATGTTAAGGTGCAATGTCAAGAGGATAATGAACTTGTTCTGAAAGTCGGTATGTCTGAGCATTGCAAGAGTGGGAAGTTCTGGGCTACCCTACAAAATGCTTGCATCCCAATAATGGAGTTGATTGATTGGGAGCGGAGCCGACCAGAGAGAGTATATGATAATTTCTGCTCATATGGCATAGACTCAGCATGGAAATTCTTTGTCGAATCTTTAAGATCCACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTGGTTGTGGCAGACTGCCTATCTGTGAGTGGGCAGTTCCATGGGCTAAGCAGTCAAGGTTTAAAGCAGCAAAGGACTTGGTTATCAATCTCCTCTCCATTTTCTGAAGCATGCTTTTCTAGGCCTGCACACAGTTTTATAAATGCTGCAAAGCGGGATTCAGTGGACAATCTTTCTGGTACTCTAGATGCAATTGCCTGGGGCAAAGAACCTTGTGCAGGGTCGTCAGGTCCTTTCAAGATTCTATATTCTGGGAAGTCACATGAGACAAAACAAAATGAGCACATATATGACTTTCTACATAACCCTGAAGTTCAGGCTCTTGAAAAGAATGTAATGGATACCTACAGAAAAAGGACTGAAAAAACTTCCAAGCGGAGATCAGCACTCAATTCTGAAGGCAATGCTACCATCAATGGTGGTGCCATATC-TTTAATCAGAAGTTTCTTAATGCTAAAGTTGGTATATGGGAGAACATCATTGACATGCGCACTTCCTTGCAAAACATGCTTCGGGAGTACACATTAAATGAAGTTGTCACAGAACAAGATAAATCATGCTTAATGGAGGCCTTGAAATTTCATCCCAGAGGGTATGACAAGATTGGTGTGGGAATAAGAGAAATCAAGATCGGAGTGAATCCTGGTCACCCGAGCTCAAGGTGCTTCATTGTACTAAGGAATGATGATACTACTGCAGACTTCTCTTACAACAAGTGTGTCCTTGGTGCTGCAAATTCTATCTCACCTGAACTTGGAAGTTATATAGAGAACAGACGATCTAATAGAGCAGTTCGGCCACATCAGTTGTAGGGTGAGCCCGTCAATGCTTTACGAACAAGTATCAGAAGCAATTTTCATGGATAACGATAGATTGGCGAATGTTGCTTCTTGGCTGCTTCGGTTAACGGGGATGGCAGGGTCTTACACTCTACAGGGATGTGTGTCAACTCAACTCAACTCACTCGAGCTACAGATGGCCGACCTGAGCCTTAGTGTAGGTTTCATGCCTTCACTTCTGTAGCACATACATCTATAGTAACCCTTAAGTTTGTTTGGACAAGAGGTAGTGGCACAAAGTGCAATAGGTGTCGTCGTTATCCTTGCATCAATTGTATGCGGAAATGATCCATATTCTAAATGAGAATCACAAAATTTTGGTCGTTGAATTTAATCTAGAATGTGATTTATTCGTGAAAAAAAAAAAAA]
[+] EMBL AK064589 [ATGAAGATAAAAAGGTTAGGACTGGAATTTATTGTAAGAGAGATTATTGACCAATACAACACCTTAAGAAAACAGTTGAACAATGCGATCCCTTCAGTTTCTATTTCGAACAGCAAATGTTCTGTAGGCAATGAGTGTGTCAAGAATCAGACCTGTTGCGTCACTATGGTAGTACAGGTGGAAATTAACTCCATGTCGCAATTGGACGTTATCAAGGAACGGGTGATTCCAAGCATCCTGGCCACACTGTTGAAAGGATTTTTGGAATTTAAGAATGTTAAGGTGCAATGTCAAGAGGATAATGAACTTGTTCTGAAAGTCGGTATGTCTGAGCATTGCAAGAGTGGGAAGTTCTGGGCTACCCTACAAAATGCTTGCATCCCAATAATGGAGTTGATTGATTGGGAGCGGAGCCGACCAGAGAGAGTATATGATAATTTCTGCTCATATGGCATAGACTCAGCATGGAAATTCTTTGTCGAATCTTTAAGATCCACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTGGTTGTGGCAGACTGCCTATCTGTGAGTGGGCAGTTCCATGGGCTAAGCAGTCAAGGTTTAAAGCAGCAAAGGACTTGGTTATCAATCTCCTCTCCATTTTCTGAAGCATGCTTTTCTAGGCCTGCACACAGTTTTATAAATGCTGCAAAGCGGGATTCAGTGGACAATCTTTCTGGTACTCTAGATGCAATTGCCTGGGGCAAAGAACCTTGTGCAGGGTCGTCAGGTCCTTTCAAGATTCTATATTCTGGGAAGTCACATGAGACAAAACAAAATGAGCACATATATGACTTTCTACATAACCCTGAAGTTCAGGCTCTTGAAAAGAATGTAATGGATACCTACAGAAAAAGGACTGAAAAAACTTCCAAGCGGAGATCAGCACTCAATTCTGAAGGCAATGCTACCATCAATGGTGGTGCCATATC TTTAATCAGAAGTTTCTTAATGCTAAAGTTGGTATATGGGAGAACATCATTGACATGCGCACTTCCTTGCAAAACATGCTTCGGGAGTACACATTAAATGAAGTTGTCACAGAACAAGATAAATCATGCTTAATGGAGGCCTTGAAATTTCATCCCAGAGGGTATGACAAGATTGGTGTGGGAATAAGAGAAATCAAGATCGGAGTGAATCCTGGTCACCCGAGCTCAAGGTGCTTCATTGTACTAAGGAATGATGATACTACTGCAGACTTCTCTTACAACAAGTGTGTCCTTGGTGCTGCAAATTCTATCTCACCTGAACTTGGAAGTTATATAGAGAACAGACGATCTAATAGAGCAGTTCGGCCACATCAGTTGTAGGGTGAGCCCGTCAATGCTTTACGAACAAGTATCAGAAGCAATTTTCATGGATAACGATAGATTGGCGAATGTTGCTTCTTGGCTGCTTCGGTTAACGGGGATGGCAGGGTCTTACACTCTACAGGGATGTGTGTCAACTCAACTCAACTCACTCGAGCTACAGATGGCCGACCTGAGCCTTAGTGTAGGTTTCATGCCTTCACTTCTGTAGCACATACATCTATAGTAACCCTTAAGTTTGTTTGGACAAGAGGTAGTGGCACAAAGTGCAATAGGTGTCGTCGTTATCCTTGCATCAATTGTATGCGGAAATGATCCATATTCTAAATGAGAATCACAAAATTTTGGTCGTTGAATTTAATCTAGAATGTGATTTATTCGTGAAAAAAAAAAAAA]
[+] EMBL OSC19191 [ CTTTCTGGTACTCTAGATGCAATTGCCTGGGGCAAAGAACCTTGTGCAGGGTCGTCAGGTCCTTTCAAGATTCTATATTCTGGGAAGTCACATGAGACAAAACAAAATGAGCACATATATGACTTTCTACATAACCCTGAAGTTCAGGCTCTTGAAAAGAATGTAATGGATACCTACAGAAAAAGGACTGAAAAAACTTCCAAGCGGAGATCAGCACTCAATTCTGANGGCAATGCTACCATCAATGGTGGTGCCATATCTTTTAATCAGAAGTTTCTTAATGCTAAAGTTGGTATATGGGNGAACATCATTGACATGCGCACTTCCTTGCAAAACATGCTTCGGGGGTACACATTAAATGNAGTTGTCACAGGACAAGGTAAATCATGCTTAATGG GGGCTTG ANTTTCATCCCngt ]
consensusID : consensus_5908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1378 fasta sequence
[TTGGGAACGGAGCCGACCAGAGAGAGTATATGATATTTTCTGCTCATATGGCATAGACTCAGCATGGAAATACTTTGTTGAATCTTTAAGATCAACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTGGTTGTGGCAGACTGTCTGTCTATAAGTGGGCAGTTCCACGGGCTAAGCAGTCAAGGTTTAAAGCAACAAAGGGCTTGGTTATCAATCTCCTCGCCATTTTCGGAAGCATGCTTTTCTAGGCCTGCATATAGCTTTATAAATGCTGCAAAGCGAGATTCAGTGGACAATCTCTCTGGTGCTCTAGATGCAATTGCCAGGGGCAAAGAACCTTGTGCTGGGACATCAGGTCCTTTCAAGGTTCTATACTCCGGAAAGTCACAAAAGACAAAACAAAACAAGAATATCTATGACTTTCTACATAACCCCGAAGTTCAGGCTTTGGAAAAGAATTTTATGGATACCTACAAACAAAGGACTGAAAAACCTTCCAAGCAGAGATCAGCATTCAGTTCTAAAGGCAATGCTACCATCAATGGTGGTACCATATCTGTCAATCAGAAGTTTCTTGATTCTAAAGTTGGCATATGGGAGAACATCATTGACATGCGCACTTGCTTGCAAAATATGCTAAGAGAGTACACATTAAATGAAGTTGTCACGGAACAAGATAAATCATGCTTGATAGAGGCGTTGAAATTTCATCCTAGAGGATATGACAAGATTGGTGTGGGGATAAGAGAAATCAAGATTGGAGTGAATCCTGGTCACCCGAACTCAAGGTGCTTCATTGTACAAAGGAGTGACGATACTAGTGCAGATTTCTCTTACAACAAGTGTGTCCTTGGTGCTGCAAACTCTATCTCACCTGAACTTGGAAGTTATATTGAGAAGATACTATCTAATAGAGCAATTCGGCCACATCAGTTGTAGGGTGAGCTTTCAAATACTTTAGGAACAAGAAATCTTCAGAAGCAACTTAGGGTGCTCAATTTACCCAGATGACGATAGATATAGGTGAATGTTGTTTTTTGTCTTCTTCAGTTAACAGGGCTCAAAGGGCTCTGCAGGAATTAAGACAGGGTTGTGCGTCAACTCAACTCAACCAATCTAGGTATTAGCTCTTTTTTTTTTTTTCAAATTAGTGGAGCTACAGATGGCCGGCCTGAGCCTTAGTGGCCCACTGCCATTAGAGGGTTTACGGATACTGTAACCCTTCATTTTCTCTCCAAGGATAGGTAGTGGCACTTAGAAATGCAATAGGCGTTGTCGTTACCCTTTGCATCATCTGTCCTGTTGTAAAGCGAAAAACGAGGACTGATGATCCATATTCGAAATGAGAACTCCAAAATTTTGGTGGTT]
[+] EMBL AK103018 [TTGGGAACGGAGCCGACCAGAGAGAGTATATGATATTTTCTGCTCATATGGCATAGACTCAGCATGGAAATACTTTGTTGAATCTTTAAGATCAACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTGGTTGTGGCAGACTGTCTGTCTATAAGTGGGCAGTTCCACGGGCTAAGCAGTCAAGGTTTAAAGCAACAAAGGGCTTGGTTATCAATCTCCTCGCCATTTTCGGAAGCATGCTTTTCTAGGCCTGCATATAGCTTTATAAATGCTGCAAAGCGAGATTCAGTGGACAATCTCTCTGGTGCTCTAGATGCAATTGCCAGGGGCAAAGAACCTTGTGCTGGGACATCAGGTCCTTTCAAGGTTCTATACTCCGGAAAGTCACAAAAGACAAAACAAAACAAGAATATCTATGACTTTCTACATAACCCCGAAGTTCAGGCTTTGGAAAAGAATTTTATGGATACCTACAAACAAAGGACTGAAAAACCTTCCAAGCAGAGATCAGCATTCAGTTCTAAAGGCAATGCTACCATCAATGGTGGTACCATATCTGTCAATCAGAAGTTTCTTGATTCTAAAGTTGGCATATGGGAGAACATCATTGACATGCGCACTTGCTTGCAAAATATGCTAAGAGAGTACACATTAAATGAAGTTGTCACGGAACAAGATAAATCATGCTTGATAGAGGCGTTGAAATTTCATCCTAGAGGATATGACAAGATTGGTGTGGGGATAAGAGAAATCAAGATTGGAGTGAATCCTGGTCACCCGAACTCAAGGTGCTTCATTGTACAAAGGAGTGACGATACTAGTGCAGATTTCTCTTACAACAAGTGTGTCCTTGGTGCTGCAAACTCTATCTCACCTGAACTTGGAAGTTATATTGAGAAGATACTATCTAATAGAGCAATTCGGCCACATCAGTTGTAGGGTGAGCTTTCAAATACTTTAGGAACAAGAAATCTTCAGAAGCAACTTAGGGTGCTCAATTTACCCAGATGACGATAGATATAGGTGAATGTTGTTTTTTGTCTTCTTCAGTTAACAGGGCTCAAAGGGCTCTGCAGGAATTAAGACAGGGTTGTGCGTCAACTCAACTCAACCAATCTAGGTATTAGCTCTTTTTTTTTTTTTCAAATTAGTGGAGCTACAGATGGCCGGCCTGAGCCTTAGTGGCCCACTGCCATTAGAGGGTTTACGGATACTGTAACCCTTCATTTTCTCTCCAAGGATAGGTAGTGGCACTTAGAAATGCAATAGGCGTTGTCGTTACCCTTTGCATCATCTGTCCTGTTGTAAAGCGAAAAACGAGGACTGATGATCCATATTCGAAATGAGAACTCCAAAATTTTGGTGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5908#0 ATGAAGATAAAAAGGTTAGGACTGGAATTTATTGTAAGAGAGATTATTGACCAATACAAC 60
consensus_5908#1 ------------------------------------------------------------
consensus_5908#0 ACCTTAAGAAAACAGTTGAACAATGCGATCCCTTCAGTTTCTATTTCGAACAGCAAATGT 120
consensus_5908#1 ------------------------------------------------------------
consensus_5908#0 TCTGTAGGCAATGAGTGTGTCAAGAATCAGACCTGTTGCGTCACTATGGTAGTACAGGTG 180
consensus_5908#1 ------------------------------------------------------------
consensus_5908#0 GAAATTAACTCCATGTCGCAATTGGACGTTATCAAGGAACGGGTGATTCCAAGCATCCTG 240
consensus_5908#1 ------------------------------------------------------------
consensus_5908#0 GCCACACTGTTGAAAGGATTTTTGGAATTTAAGAATGTTAAGGTGCAATGTCAAGAGGAT 300
consensus_5908#1 ------------------------------------------------------------
consensus_5908#0 AATGAACTTGTTCTGAAAGTCGGTATGTCTGAGCATTGCAAGAGTGGGAAGTTCTGGGCT 360
consensus_5908#1 ------------------------------------------------------------
consensus_5908#0 ACCCTACAAAATGCTTGCATCCCAATAATGGAGTTGATTGATTGGGAGCGGAGCCGACCA 420
consensus_5908#1 -----------------------------------------TTGGGAACGGAGCCGACCA 19
****** ************
consensus_5908#0 GAGAGAGTATATGATAATTTCTGCTCATATGGCATAGACTCAGCATGGAAATTCTTTGTC 480
consensus_5908#1 GAGAGAGTATATGATATTTTCTGCTCATATGGCATAGACTCAGCATGGAAATACTTTGTT 79
**************** *********************************** ******
consensus_5908#0 GAATCTTTAAGATCCACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTG 540
consensus_5908#1 GAATCTTTAAGATCAACAACAGATGCTATTGGAAGGAATATCCATCGACAGCACTTACTG 139
************** *********************************************
consensus_5908#0 GTTGTGGCAGACTGCCTATCTGTGAGTGGGCAGTTCCATGGGCTAAGCAGTCAAGGTTTA 600
consensus_5908#1 GTTGTGGCAGACTGTCTGTCTATAAGTGGGCAGTTCCACGGGCTAAGCAGTCAAGGTTTA 199
************** ** *** * ************** *********************
consensus_5908#0 AAGCAGCAAAGGACTTGGTTATCAATCTCCTCTCCATTTTCTGAAGCATGCTTTTCTAGG 660
consensus_5908#1 AAGCAACAAAGGGCTTGGTTATCAATCTCCTCGCCATTTTCGGAAGCATGCTTTTCTAGG 259
***** ****** ******************* ******** ******************
consensus_5908#0 CCTGCACACAGTTTTATAAATGCTGCAAAGCGGGATTCAGTGGACAATCTTTCTGGTACT 720
consensus_5908#1 CCTGCATATAGCTTTATAAATGCTGCAAAGCGAGATTCAGTGGACAATCTCTCTGGTGCT 319
****** * ** ******************** ***************** ****** **
consensus_5908#0 CTAGATGCAATTGCCTGGGGCAAAGAACCTTGTGCAGGGTCGTCAGGTCCTTTCAAGATT 780
consensus_5908#1 CTAGATGCAATTGCCAGGGGCAAAGAACCTTGTGCTGGGACATCAGGTCCTTTCAAGGTT 379
*************** ******************* *** * *************** **
consensus_5908#0 CTATATTCTGGGAAGTCACATGAGACAAAACAAAATGAGCACATATATGACTTTCTACAT 840
consensus_5908#1 CTATACTCCGGAAAGTCACAAAAGACAAAACAAAACAAGAATATCTATGACTTTCTACAT 439
***** ** ** ******** ************* ** * ** ***************
consensus_5908#0 AACCCTGAAGTTCAGGCTCTTGAAAAGAATGTAATGGATACCTACAGAAAAAGGACTGAA 900
consensus_5908#1 AACCCCGAAGTTCAGGCTTTGGAAAAGAATTTTATGGATACCTACAAACAAAGGACTGAA 499
***** ************ * ********* * ************* * ***********
consensus_5908#0 AAAACTTCCAAGCGGAGATCAGCACTCAATTCTGAAGGCAATGCTACCATCAATGGTGGT 960
consensus_5908#1 AAACCTTCCAAGCAGAGATCAGCATTCAGTTCTAAAGGCAATGCTACCATCAATGGTGGT 559
*** ********* ********** *** **** **************************
consensus_5908#0 GCCATATCT-TTAATCAGAAGTTTCTTAATGCTAAAGTTGGTATATGGGAGAACATCATT 1019
consensus_5908#1 ACCATATCTGTCAATCAGAAGTTTCTTGATTCTAAAGTTGGCATATGGGAGAACATCATT 619
******** * *************** ** ********** ******************
consensus_5908#0 GACATGCGCACTTCCTTGCAAAACATGCTTCGGGAGTACACATTAAATGAAGTTGTCACA 1079
consensus_5908#1 GACATGCGCACTTGCTTGCAAAATATGCTAAGAGAGTACACATTAAATGAAGTTGTCACG 679
************* ********* ***** * **************************
consensus_5908#0 GAACAAGATAAATCATGCTTAATGGAGGCCTTGAAATTTCATCCCAGAGGGTATGACAAG 1139
consensus_5908#1 GAACAAGATAAATCATGCTTGATAGAGGCGTTGAAATTTCATCCTAGAGGATATGACAAG 739
******************** ** ***** ************** ***** *********
consensus_5908#0 ATTGGTGTGGGAATAAGAGAAATCAAGATCGGAGTGAATCCTGGTCACCCGAGCTCAAGG 1199
consensus_5908#1 ATTGGTGTGGGGATAAGAGAAATCAAGATTGGAGTGAATCCTGGTCACCCGAACTCAAGG 799
*********** ***************** ********************** *******
consensus_5908#0 TGCTTCATTGTACTAAGGAATGATGATACTACTGCAGACTTCTCTTACAACAAGTGTGTC 1259
consensus_5908#1 TGCTTCATTGTACAAAGGAGTGACGATACTAGTGCAGATTTCTCTTACAACAAGTGTGTC 859
************* ***** *** ******* ****** *********************
consensus_5908#0 CTTGGTGCTGCAAATTCTATCTCACCTGAACTTGGAAGTTATATAGAGAACAGACGATCT 1319
consensus_5908#1 CTTGGTGCTGCAAACTCTATCTCACCTGAACTTGGAAGTTATATTGAGAAGATACTATCT 919
************** ***************************** ***** * ** ****
consensus_5908#0 AATAGAGCAGTTCGGCCACATCAGTTGTAGGGTGAGCCCGTCAATGCTTTACGAACAAGT 1379
consensus_5908#1 AATAGAGCAATTCGGCCACATCAGTTGTAGGGTGAGCTTTCAAATACTTTAGGAACAAGA 979
********* *************************** *** ***** *******
consensus_5908#0 A----TCAGAAGCAA--------------TTTTCATGGATAACGATAGATT--GGCGAAT 1419
consensus_5908#1 AATCTTCAGAAGCAACTTAGGGTGCTCAATTTACCCAGATGACGATAGATATAGGTGAAT 1039
* ********** *** * *** ********* ** ****
consensus_5908#0 GTTGCTTCTTGGCTGCTTCGGTTAACGGGGATGGCAGGGTCTTACA-----CTCTACAGG 1474
consensus_5908#1 GTTGTTTTTTGTCTTCTTCAGTTAACAGGGCTCAAAGGGCTCTGCAGGAATTAAGACAGG 1099
**** ** *** ** **** ****** *** * **** * ** *****
consensus_5908#0 GATGTGTGTCAACTCAACTCAAC-----------------------------------TC 1499
consensus_5908#1 GTTGTGCGTCAACTCAACTCAACCAATCTAGGTATTAGCTCTTTTTTTTTTTTTCAAATT 1159
* **** **************** *
consensus_5908#0 ACTCGAGCTACAGATGGCCGACCTGAGCCTTAGTGTAGGTTTCATGCCTTCACTTCTGTA 1559
consensus_5908#1 AGTGGAGCTACAGATGGCCGGCCTGAGCCTTAGTG---GCCCACTGCCATTAG------A 1210
* * **************** ************** * **** * * *
consensus_5908#0 GCACATACATCTATAGTAACCCTTAAGTTTGTTTG-GACAAGAGGTAGTGGCAC---AAA 1615
consensus_5908#1 GGGTTTACGGATACTGTAACCCTTCATTTTCTCTCCAAGGATAGGTAGTGGCACTTAGAA 1270
* *** ** ********* * *** * * * * ************ **
consensus_5908#0 GTGCAATAGGTGTCGTCGTTATCCTT-GCATCAATTGT---------ATGCGGAAA---- 1661
consensus_5908#1 ATGCAATAGGCGTTGTCGTTACCCTTTGCATCATCTGTCCTGTTGTAAAGCGAAAAACGA 1330
********* ** ******* **** ****** *** * *** ***
consensus_5908#0 -------TGATCCATATTCTAAATGAGAATCACAAAATTTTGGTCGTTGAATTTAATCTA 1714
consensus_5908#1 GGACTGATGATCCATATTCGAAATGAGAACTCCAAAATTTTGGTGGTT------------ 1378
************ ********* ************ ***
consensus_5908#0 GAATGTGATTTATTCGTGAAAAAAAAAAAAA 1745
consensus_5908#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||