cluster # 5924

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Oryza sativa
cluster # 5924 cluster # 5924 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5924#0 length = 932 sequences # 2

consensus_5924#1 length = 292 sequences # 1

consensusID : consensus_5924#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 932
fasta sequence

                              [CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCATCANCGACACCGCTTCCAGCCCACGCAACCCTCGAACAATGGCGAGGGCTCGCCGGGGACGACAAAACGCCGCCGCATCGCCGCCGTCGCTGGCCCTGCAGNTGCAGGTGGCCAGNCTCGTCATCGTCTTCGTCTTCGCCTTCTCCTCCGCCATCACGGCTACACGAGCTGATCATGTAGAAGGACACATNTCGCACGAGATGTTTGGCTACGAAAAACGACGNGACGGGGGCCGGCGAAGTGGGGGNTCGCTTGCACAAGGGAGTNGGCCGTCTTNGGCGACGGCAAGAAGCAGTCGCCGATCGACATCACCACGGTGGAGCCGCAGAAAGTGAAGGAGCCGCTGATGCAAGCCTACAAGGCCGGCGCCACCACCATTCAGAACCGAGGCCACGACTACATGCTGAAATGGAAAGATGGGAATAGCAAGCTGACGGTCCAAGGGAAGGAGTACACGCTCAAGCAGGTGCACTGGCATGAACCCTCCGAGCACACAATCAACGGAACCAGGTTCGACGCAGAGATGCACATGGTTCACGAGGACCCCAGCATGGCGAGAGCCGTCGTCTCTGTGCTGTTGAGCACCAAAGCAGGCCAACCCAACGCAGTGCTCACCGAGGTAGTAACAACGACGTGCCTCACCGTTCACCTGAAATGGTTCGTTTCCATTTCATCTCCCACGGAGAGGCCAAGAAATGGAAATGAACACATCTAGATGAATTGTGAATACTAACTAGAAAGTACTTGATGTCAAATAGTGATCTTTAGTACTGGTAAGTGGTACTGTATAACCCAATATGGTACATGGAAGATTGGAAGTGCTAGCTAGCACGGTAGCACCCATGTCCCCACAAATGCAAAATACGTTCCCACGAAGTAATACGAGAATAT]

[+] EMBL OSC242               [CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCATCANCGACACCGCTTCCAGCCCACGCAACCCTCGAACAATGGCGAGGGCTCGCCGGGGACGACAAAACGCCGCCGCATCGCCGCCGTCGCTGGCCCTGCAGNTGCAGGTGGCCAGNCTCGTCATCGTCTTCGTCTTCGCCTTCTCCTCCGCCATCACGGCTACACGAGCTGATCATGTAGAAGGACACATNTCGCACGAGATGTTTGGCTACGAAAAACGACGNGACGGGGGCCGGCGAAGTGGGGGNTCGCTTGCACAAGGGAGTNGGCCGTCTTNGGCGACGGCAAGAAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK111065             [                                                                   AACCCTCGAACAATGGCGAGGGCTCGCCGGGGACGACAAAACGCCGCCGCATCGCCGCCGTCGCTGGCCCTGCAGCTGCAGGTGGCCAGCCTCGTCATCGTCTTCGTCTTCGCCTTCTCCTCCGCCATCACGCCTACACGAGCTGATCATGTAGAAGGACACATGTCGCACGAGATGTTTGGCTACG AAAACGACGCGAC GGGGCCGGCGAAGT GGGGCTCGC TGCACAA GGAGTGGGCCGTCTGCGGCGACGGCAAGAAGCAGTCGCCGATCGACATCACCACGGTGGAGCCGCAGAAAGTGAAGGAGCCGCTGATGCAAGCCTACAAGGCCGGCGCCACCACCATTCAGAACCGAGGCCACGACTACATGCTGAAATGGAAAGATGGGAATAGCAAGCTGACGGTCCAAGGGAAGGAGTACACGCTCAAGCAGGTGCACTGGCATGAACCCTCCGAGCACACAATCAACGGAACCAGGTTCGACGCAGAGATGCACATGGTTCACGAGGACCCCAGCATGGCGAGAGCCGTCGTCTCTGTGCTGTTGAGCACCAAAGCAGGCCAACCCAACGCAGTGCTCACCGAGGTAGTAACAACGACGTGCCTCACCGTTCACCTGAAATGGTTCGTTTCCATTTCATCTCCCACGGAGAGGCCAAGAAATGGAAATGAACACATCTAGATGAATTGTGAATACTAACTAGAAAGTACTTGATGTCAAATAGTGATCTTTAGTACTGGTAAGTGGTACTGTATAACCCAATATGGTACATGGAAGATTGGAAGTGCTAGCTAGCACGGTAGCACCCATGTCCCCACAAATGCAAAATACGTTCCCACGAAGTAATACGAGAATAT]




>consensus_5924#0
CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCATCANCGACACCGCTTCCAG
CCCACGCAACCCTCGAACAATGGCGAGGGCTCGCCGGGGACGACAAAACGCCGCCGCATC
GCCGCCGTCGCTGGCCCTGCAGNTGCAGGTGGCCAGNCTCGTCATCGTCTTCGTCTTCGC
CTTCTCCTCCGCCATCACGGCTACACGAGCTGATCATGTAGAAGGACACATNTCGCACGA
GATGTTTGGCTACGAAAAACGACGNGACGGGGGCCGGCGAAGTGGGGGNTCGCTTGCACA
AGGGAGTNGGCCGTCTTNGGCGACGGCAAGAAGCAGTCGCCGATCGACATCACCACGGTG
GAGCCGCAGAAAGTGAAGGAGCCGCTGATGCAAGCCTACAAGGCCGGCGCCACCACCATT
CAGAACCGAGGCCACGACTACATGCTGAAATGGAAAGATGGGAATAGCAAGCTGACGGTC
CAAGGGAAGGAGTACACGCTCAAGCAGGTGCACTGGCATGAACCCTCCGAGCACACAATC
AACGGAACCAGGTTCGACGCAGAGATGCACATGGTTCACGAGGACCCCAGCATGGCGAGA
GCCGTCGTCTCTGTGCTGTTGAGCACCAAAGCAGGCCAACCCAACGCAGTGCTCACCGAG
GTAGTAACAACGACGTGCCTCACCGTTCACCTGAAATGGTTCGTTTCCATTTCATCTCCC
ACGGAGAGGCCAAGAAATGGAAATGAACACATCTAGATGAATTGTGAATACTAACTAGAA
AGTACTTGATGTCAAATAGTGATCTTTAGTACTGGTAAGTGGTACTGTATAACCCAATAT
GGTACATGGAAGATTGGAAGTGCTAGCTAGCACGGTAGCACCCATGTCCCCACAAATGCA
AAATACGTTCCCACGAAGTAATACGAGAATAT

consensusID : consensus_5924#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCACCATGAGGATCGACGCGGCGATCCTCGCCGCNGTCGTCGCCTTCCTCCTCCCCCTCCGCCTTCTCTCCCTCCTCGCCCGCCTCAGCCTCACCGGCAGCGCGANGACCTCCGCCGTCCCTGCGCGGCCTTCGCGCTCTCCGCCGCGCTCCTCGCCGCCATCTTCGCCCTCCNGNGCGACCACGCCAGGGAGTGCGCCGCGGNCTCCGTCGTCGTCCCCGATGACGGAGAGGGTGCCTTCCGCGGCGAGGTGC]

[+] EMBL OSC241               [CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCACCATGAGGATCGACGCGGCGATCCTCGCCGCNGTCGTCGCCTTCCTCCTCCCCCTCCGCCTTCTCTCCCTCCTCGCCCGCCTCAGCCTCACCGGCAGCGCGANGACCTCCGCCGTCCCTGCGCGGCCTTCGCGCTCTCCGCCGCGCTCCTCGCCGCCATCTTCGCCCTCCNGNGCGACCACGCCAGGGAGTGCGCCGCGGNCTCCGTCGTCGTCCCCGATGACGGAGAGGGTGCCTTCCGCGGCGAGGTGC]




>consensus_5924#1
CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCACCATGAGGATCGACGCGGC
GATCCTCGCCGCNGTCGTCGCCTTCCTCCTCCCCCTCCGCCTTCTCTCCCTCCTCGCCCG
CCTCAGCCTCACCGGCAGCGCGANGACCTCCGCCGTCCCTGCGCGGCCTTCGCGCTCTCC
GCCGCGCTCCTCGCCGCCATCTTCGCCCTCCNGNGCGACCACGCCAGGGAGTGCGCCGCG
GNCTCCGTCGTCGTCCCCGATGACGGAGAGGGTGCCTTCCGCGGCGAGGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5924#0      CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCATCANCGACACCGCTTC--C 58
consensus_5924#1      CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCACCATGAGGATCGACGCGGC 60
                      ***************************************** **     * **   *  *

consensus_5924#0      AGCCCACGCAACCCTCGA-ACAATGGCGAGGGCTCGCCGGGGACGACAAAACGCCGCC-G 116
consensus_5924#1      GATCCTCGCCGCNGTCGTCGCCTTCCTCCTCCCCCTCCGCCTTCTCTCCCTCCTCGCCCG 120
                         ** ***  *  ***   *  *        * * ***    *       *  **** *

consensus_5924#0      CATCGCCGCCGTCGCTGGCCCTGCAGNTGCAGGTGGCCAGNCTCG-TCATCGTCTTCGTC 175
consensus_5924#1      CCTCAGCCTCACCGGCAGCGCGANGACCTCCGCCGTCCCTGCGCGGCCTTCGCGCTCTCC 180
                      * **  *  *  **   ** *        * *  * **   * **  * ***   **  *

consensus_5924#0      TTCGCCTTCTCCTCCGCCATCACGGCTACACGAGCTGATCATGTAGAAGGACACATNTCG 235
consensus_5924#1      GCCGCGCTCCTCGCCGCCATCTTCGCCCTCCNGNGCGACCACGCCAGGGAGTGCGCCGCG 240
                        ***  **  * ********   **    *     ** ** *     *    *    **

consensus_5924#0      CACGAGATGTTTGGCTACGAAAAACGACGNGACGGGGGCCGGCGAAGTGGGGGNTCGCTT 295
consensus_5924#1      GNCTCCGTCGTCGTCCCCG----ATGACGGAGAGGGTGCCTTCCGCGGCGAGGTGC---- 292
                        *    *  * * *  **    * ****    *** ***  *   *  * **  *    

consensus_5924#0      GCACAAGGGAGTNGGCCGTCTTNGGCGACGGCAAGAAGCAGTCGCCGATCGACATCACCA 355
consensus_5924#1      ------------------------------------------------------------
                                                                                  

consensus_5924#0      CGGTGGAGCCGCAGAAAGTGAAGGAGCCGCTGATGCAAGCCTACAAGGCCGGCGCCACCA 415
consensus_5924#1      ------------------------------------------------------------
                                                                                  

consensus_5924#0      CCATTCAGAACCGAGGCCACGACTACATGCTGAAATGGAAAGATGGGAATAGCAAGCTGA 475
consensus_5924#1      ------------------------------------------------------------
                                                                                  

consensus_5924#0      CGGTCCAAGGGAAGGAGTACACGCTCAAGCAGGTGCACTGGCATGAACCCTCCGAGCACA 535
consensus_5924#1      ------------------------------------------------------------
                                                                                  

consensus_5924#0      CAATCAACGGAACCAGGTTCGACGCAGAGATGCACATGGTTCACGAGGACCCCAGCATGG 595
consensus_5924#1      ------------------------------------------------------------
                                                                                  

consensus_5924#0      CGAGAGCCGTCGTCTCTGTGCTGTTGAGCACCAAAGCAGGCCAACCCAACGCAGTGCTCA 655
consensus_5924#1      ------------------------------------------------------------
                                                                                  

consensus_5924#0      CCGAGGTAGTAACAACGACGTGCCTCACCGTTCACCTGAAATGGTTCGTTTCCATTTCAT 715
consensus_5924#1      ------------------------------------------------------------
                                                                                  

consensus_5924#0      CTCCCACGGAGAGGCCAAGAAATGGAAATGAACACATCTAGATGAATTGTGAATACTAAC 775
consensus_5924#1      ------------------------------------------------------------
                                                                                  

consensus_5924#0      TAGAAAGTACTTGATGTCAAATAGTGATCTTTAGTACTGGTAAGTGGTACTGTATAACCC 835
consensus_5924#1      ------------------------------------------------------------
                                                                                  

consensus_5924#0      AATATGGTACATGGAAGATTGGAAGTGCTAGCTAGCACGGTAGCACCCATGTCCCCACAA 895
consensus_5924#1      ------------------------------------------------------------
                                                                                  

consensus_5924#0      ATGCAAAATACGTTCCCACGAAGTAATACGAGAATAT 932
consensus_5924#1      -------------------------------------