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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1162 fasta sequence
[GCCTCTCCACCGGGAACCGCTCACCGGCCGCCACACACGAGTGCAGGATGCTCCCCCTCGCCGCCGGCGCCGGCGCCGCGAGACCCTGCCTCTCCTCCTCACCGGCGCCGCCGGTATCCTCGCCCGGGGCGATTCCTCTCCTTCGCCACACTCCTATCCCTCACCACCGCAGGCGCCCCCTCGCGGCGCTCCGAACCCGCATCATGCTCCTCCGGCCTCTCAGAGCCGCCGCCTCGCCGGGGCCGGCGGCGTCCTCGCGCCCGGCAAGGGACCGCGTGATTGACTTCGGGAAGCACAAGGGGCAGATGCTGGGCACGCTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACTACGGGGACACCGCGGCATGGGCGAGCCTCGCGCGGGAGGTGCTCGACGACCCGGTCTACGTCGACCGCGTCGAGTGGGAGCACGCGCACCGCTTCCTCCGCGGGGACACCGACTACGACGGCGACGGCGAGGATGGGCCGCTCCATGAGATGGCCGACCGCTTCGGCTGGGACCTCTCCGACGAGGAGGGGTGGAGCCGCCTCGACTTCCGCCTCCTCGGCACCTCCTACGGTGGCCGCATCCCGCGAAAGGGCGGCCGGAGGCAAACCACCACCAGCTCCCTGTTCGACATCGGGGCTGAAACGGACGGCCCGCGAGGGAAGCGGGACGAGAGGAGGGAGCGGATGCGGCTGAGGAGGGAGACGCAGGTGAGGGGTGCCAAGTTGGATATGCTCGGGGTGAACGCCGGCGTCAAGGACGGCGGTGTTCTAGGGACGCCGAGGAAGGCCCGTACTAGGACGACGGCCAAGACGGACATTTTGGGATTGGGTCGGCGCAGGAGCCGCGGCGGTGAGGTGCTCGGCGAGAAGGTGTTGCCTGGTTCCGGCGGTCAGGGAGGGAACCCGTTCCCCGGCCGGCAAGCATTCCTCGACAAGGTCAGGAAGCTGAAAGATGATAGCTAGTTTGGCGACTTCAGGAGATCAGAACAATAGGGTGAATTGTACATGTAAATCTTGATTTTGGCTGAGGATTATTAGTTTACGATTGACTGAACGATTTGTGAGAGGTTGGTTATGCTGAATTTGTGCAGTTGGTTGCGAGTTTGCAATTGTGTATCATTGCGCCCTGTAATTGTGATTCA]
[+] EMBL AK103850 [GCCTCTCCACCGGGAACCGCTCACCGGCCGCCACACACGAGTGCAGGATGCTCCCCCTCGCCGCCGGCGCCGGCGCCGCGAGACCCTGCCTCTCCTCCTCACCGGCGCCGCCGGTATCCTCGCCCGGGGCGATTCCTCTCCTTCGCCACACTCCTATCCCTCACCACCGCAGGCGCCCCCTCGCGGCGCTCCGAACCCGCATCATGCTCCTCCGGCCTCTCAGAGCCGCCGCCTCGCCGGGGCCGGCGGCGTCCTCGCGCCCGGCAAGGGACCGCGTGATTGACTTCGGGAAGCACAAGGGGCAGATGCTGGGCACGCTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACTACGGGGACACCGCGGCATGGGCGAGCCTCGCGCGGGAGGTGCTCGACGACCCGGTCTACGTCGACCGCGTCGAGTGGGAGCACGCGCACCGCTTCCTCCGCGGGGACACCGACTACGACGGCGACGGCGAGGATGGGCCGCTCCATGAGATGGCCGACCGCTTCGGCTGGGACCTCTCCGACGAGGAGGGGTGGAGCCGCCTCGACTTCCGCCTCCTCGGCACCTCCTACGGTGGCCGCATCCCGCGAAAGGGCGGCCGGAGGCAAACCACCACCAGCTCCCTGTTCGACATCGGGGCTGAAACGGACGGCCCGCGAGGGAAGCGGGACGAGAGGAGGGAGCGGATGCGGCTGAGGAGGGAGACGCAGGTGAGGGGTGCCAAGTTGGATATGCTCGGGGTGAACGCCGGCGTCAAGGACGGCGGTGTTCTAGGGACGCCGAGGAAGGCCCGTACTAGGACGACGGCCAAGACGGACATTTTGGGATTGGGTCGGCGCAGGAGCCGCGGCGGTGAGGTGCTCGGCGAGAAGGTGTTGCCTGGTTCCGGCGGTCAGGGAGGGAACCCGTTCCCCGGCCGGCAAGCATTCCTCGACAAGGTCAGGAAGCTGAAAGATGATAGCTAGTTTGGCGACTTCAGGAGATCAGAACAATAGGGTGAATTGTACATGTAAATCTTGATTTTGGCTGAGGATTATTAGTTTACGATTGACTGAACGATTTGTGAGAGGTTGGTTATGCTGAATTTGTGCAGTTGGTTGCGAGTTTGCAATTGTGTATCATTGCGCCCTGTAATTGTGATT ]
[+] EMBL AK060973 [ TCTCCACCGGGAACCGCTCACCGGCCGCCACACACGAGTGCAGGATGCTCCCCCTCGCCGCCGGCGCCGGCGCCGCGAGACCCTGCCTCTCCTCCTCACCGGCGCCGCCGGTATCCTCGCCCGGGGCGATTCCTCTCCTTCGCCACACTCCTATCCCTCACCACCGCAGGCGCCCCCTCGCGGCGCTCCGAACCCGCATCATGCTCCTCCGGCCTCTCAGAGCCGCCGCCTCGCCGGGGCCGGCGGCGTCCTCGCGCCCGGCAAGGGACCGCGTGATTGACTTCGGGAAGCACAAGGGGCAGATGCTGGGCACGCTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACTACGGGGACACCGCGGCATGGGCGAGCCTCGCGCGGGAGGTGCTCGACGACCCGGTCTACGTCGACCGCGTCGAGTGGGAGCACGCGCACCGCTTCCTCCGCGGGGACACCGACTACGACGGCGACGGCGAGGATGGGCCGCTCCATGAGATGGCCGACCGCTTCGGCTGGGACCTCTCCGACGAGGAGGGGTGGAGCCGCCTCGACTTCCGCCTCCTCGGCACCTCCTACGGTGGCCGCATCCCGCGAAAGGGCGGCCGGAGGCAAACCACCACCAGCTCCCTGTTCGACATCGGGGCTGAAACGGACGGCCCGCGAGGGAAGCGGGACGAGAGGAGGGAGCGGATGCGGCTGAGGAGGGAGACGCAGGTGAGGGGTGCCAAGTTGGATATGCTCGGGGTGAACGCCGGCGTCAAGGACGGCGGTGTTCTAGGGACGCCGAGGAAGGCCCGTACTAGGACGACGGCCAAGACGGACATTTTGGGATTGGGTCGGCGCAGGAGCCGCGGCGGTGAGGTGCTCGGCGAGAAGGTGTTGCCTGGTTCCGGCGGTCAGGGAGGGAACCCGTTCCCCGGCCGGCAAGCATTCCTCGACAAGGTCAGGAAGCTGAAAGATGATAGCTAGTTTGGCGACTTCAGGAGATCAGAACAATAGGGTGAATTGTACATGTAAATCTTGATTTTGGCTGAGGATTATTAGTTTACGATTGACTGAACGATTTGTGAGAGGTTGGTTATGCTGAATTTGTGCAGTTGGTTGCGAGTTTGCAATTGTGTATCATTGCGCCCTGTAATTGTGATTCA]
consensusID : consensus_5928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence
[GACTTCGGGAAGCACAAGGGGCAGATGCTGGGCACGNTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACTACGGGGACACCGCGGCATGNGNGAGCCTCGNGCGGGAGGTGCTCGANGACCCGGTCTANGTCGACCNCNTCGANGTGGGAGCACNAGCANNGATTNCTTCGNGGGGACACCG]
[+] EMBL OSC24781 [GACTTCGGGAAGCACAAGGGGCAGATGCTGGGCACGNTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACTACGGGGACACCGCGGCATGNGNGAGCCTCGNGCGGGAGGTGCTCGANGACCCGGTCTANGTCGACCNCNTCGANGTGGGAGCACNAGCANNGATTNCTTCGNGGGGACACCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5928#0 GCCTCTCCACCGGGAACCGCTCACCGGCCGCCACACACGAGTGCAGGATGCTCCCCCTCG 60
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 CCGCCGGCGCCGGCGCCGCGAGACCCTGCCTCTCCTCCTCACCGGCGCCGCCGGTATCCT 120
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 CGCCCGGGGCGATTCCTCTCCTTCGCCACACTCCTATCCCTCACCACCGCAGGCGCCCCC 180
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 TCGCGGCGCTCCGAACCCGCATCATGCTCCTCCGGCCTCTCAGAGCCGCCGCCTCGCCGG 240
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 GGCCGGCGGCGTCCTCGCGCCCGGCAAGGGACCGCGTGATTGACTTCGGGAAGCACAAGG 300
consensus_5928#1 -----------------------------------------GACTTCGGGAAGCACAAGG 19
*******************
consensus_5928#0 GGCAGATGCTGGGCACGCTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACT 360
consensus_5928#1 GGCAGATGCTGGGCACGNTCCCGCCGTCCTACCTGCGGTGGGTCGTCGCCGAGCTCGACT 79
***************** ******************************************
consensus_5928#0 ACGGGGACACCGCGGCATGGGCGAGCCTCGCGCGGGAGGTGCTCGACGACCCGGTCTACG 420
consensus_5928#1 ACGGGGACACCGCGGCATGNGNGAGCCTCGNGCGGGAGGTGCTCGANGACCCGGTCTANG 139
******************* * ******** *************** *********** *
consensus_5928#0 TCGACCGCGTCGAG-TGGGAGCACGCGCACCGCTTCCTCCGCGGGGACACCGACTACGAC 479
consensus_5928#1 TCGACCNCNTCGANGTGGGAGCACNAGCANNGATTNCTTCGNGGGGACACCG-------- 191
****** * **** ********* *** * ** ** ** **********
consensus_5928#0 GGCGACGGCGAGGATGGGCCGCTCCATGAGATGGCCGACCGCTTCGGCTGGGACCTCTCC 539
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 GACGAGGAGGGGTGGAGCCGCCTCGACTTCCGCCTCCTCGGCACCTCCTACGGTGGCCGC 599
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 ATCCCGCGAAAGGGCGGCCGGAGGCAAACCACCACCAGCTCCCTGTTCGACATCGGGGCT 659
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 GAAACGGACGGCCCGCGAGGGAAGCGGGACGAGAGGAGGGAGCGGATGCGGCTGAGGAGG 719
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 GAGACGCAGGTGAGGGGTGCCAAGTTGGATATGCTCGGGGTGAACGCCGGCGTCAAGGAC 779
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 GGCGGTGTTCTAGGGACGCCGAGGAAGGCCCGTACTAGGACGACGGCCAAGACGGACATT 839
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 TTGGGATTGGGTCGGCGCAGGAGCCGCGGCGGTGAGGTGCTCGGCGAGAAGGTGTTGCCT 899
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 GGTTCCGGCGGTCAGGGAGGGAACCCGTTCCCCGGCCGGCAAGCATTCCTCGACAAGGTC 959
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 AGGAAGCTGAAAGATGATAGCTAGTTTGGCGACTTCAGGAGATCAGAACAATAGGGTGAA 1019
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 TTGTACATGTAAATCTTGATTTTGGCTGAGGATTATTAGTTTACGATTGACTGAACGATT 1079
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 TGTGAGAGGTTGGTTATGCTGAATTTGTGCAGTTGGTTGCGAGTTTGCAATTGTGTATCA 1139
consensus_5928#1 ------------------------------------------------------------
consensus_5928#0 TTGCGCCCTGTAATTGTGATTCA 1162
consensus_5928#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||