cluster # 5929

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5929 cluster # 5929 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5929#0 length = 683 sequences # 1

consensus_5929#1 length = 428 sequences # 2

consensusID : consensus_5929#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [TCTCTTCGTTTCAATCTAGCGACCGAACGCGAGAAGTCGAGAAGAGAAGCGGCAGCGACACCGGCGCCGCCCACCACCACTGCATCGCCGCCGCGGCGTGCCTCACCGGTCCCGCCCCCCAACAGCTGCGCCGCCGCCTCTCCCCGGTGAGTCTCCTCCCCAGCCGCCGCCTATCCTCAGCGAAACCCTAGGCACCGAGCCGGCCGCATCGACGCGTACGGCCGTGCTGTGTCCGCCGGTGAGGTGCTGGCGGCGCACCCCAACCACGTGCTTAGCCGGCAGTGCTCGTCGCAGCAGGGGGCGATGGGCCGGATACACATCGTGTCGCCGGAGTCGAAGCTGGAGTGCGGCGAGATCTACTTCCTCATCCCGGCCGCCTCCGTCCCCGACGCCAAGAGAAGGACGAGCACCGGCGGCGCCGCAGGCCACGGGCACCACGTCCGCAGCAAGTCGGAGGGCAACGCCGCCGTCGCCGATTGGTTGGGCAGCCAGTGCAGCGCGTCGCCGGAGACGACAAGGATGATGAGGGTGCAGAAGCAACACCACCACCAACACCGGCGGCGCATGAGCACCGGGAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACTGAGGACCCCTGAGCTTAGCTTTCATTTTTTTTTCTTCTCTTCTCTGAATTCATAGTGGTTTTTTT]

[+] EMBL AK108022             [TCTCTTCGTTTCAATCTAGCGACCGAACGCGAGAAGTCGAGAAGAGAAGCGGCAGCGACACCGGCGCCGCCCACCACCACTGCATCGCCGCCGCGGCGTGCCTCACCGGTCCCGCCCCCCAACAGCTGCGCCGCCGCCTCTCCCCGGTGAGTCTCCTCCCCAGCCGCCGCCTATCCTCAGCGAAACCCTAGGCACCGAGCCGGCCGCATCGACGCGTACGGCCGTGCTGTGTCCGCCGGTGAGGTGCTGGCGGCGCACCCCAACCACGTGCTTAGCCGGCAGTGCTCGTCGCAGCAGGGGGCGATGGGCCGGATACACATCGTGTCGCCGGAGTCGAAGCTGGAGTGCGGCGAGATCTACTTCCTCATCCCGGCCGCCTCCGTCCCCGACGCCAAGAGAAGGACGAGCACCGGCGGCGCCGCAGGCCACGGGCACCACGTCCGCAGCAAGTCGGAGGGCAACGCCGCCGTCGCCGATTGGTTGGGCAGCCAGTGCAGCGCGTCGCCGGAGACGACAAGGATGATGAGGGTGCAGAAGCAACACCACCACCAACACCGGCGGCGCATGAGCACCGGGAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACTGAGGACCCCTGAGCTTAGCTTTCATTTTTTTTTCTTCTCTTCTCTGAATTCATAGTGGTTTTTTT]




>consensus_5929#0
TCTCTTCGTTTCAATCTAGCGACCGAACGCGAGAAGTCGAGAAGAGAAGCGGCAGCGACA
CCGGCGCCGCCCACCACCACTGCATCGCCGCCGCGGCGTGCCTCACCGGTCCCGCCCCCC
AACAGCTGCGCCGCCGCCTCTCCCCGGTGAGTCTCCTCCCCAGCCGCCGCCTATCCTCAG
CGAAACCCTAGGCACCGAGCCGGCCGCATCGACGCGTACGGCCGTGCTGTGTCCGCCGGT
GAGGTGCTGGCGGCGCACCCCAACCACGTGCTTAGCCGGCAGTGCTCGTCGCAGCAGGGG
GCGATGGGCCGGATACACATCGTGTCGCCGGAGTCGAAGCTGGAGTGCGGCGAGATCTAC
TTCCTCATCCCGGCCGCCTCCGTCCCCGACGCCAAGAGAAGGACGAGCACCGGCGGCGCC
GCAGGCCACGGGCACCACGTCCGCAGCAAGTCGGAGGGCAACGCCGCCGTCGCCGATTGG
TTGGGCAGCCAGTGCAGCGCGTCGCCGGAGACGACAAGGATGATGAGGGTGCAGAAGCAA
CACCACCACCAACACCGGCGGCGCATGAGCACCGGGAGCCATGCCTCGCCGTGGCAGCCG
CACCTCTCGTGCATCACTGAGGACCCCTGAGCTTAGCTTTCATTTTTTTTTCTTCTCTTC
TCTGAATTCATAGTGGTTTTTTT

consensusID : consensus_5929#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 428
fasta sequence

                              [GCGCGGGCACCACGTCCGCAGCAAGTCGGAGGGCAGCGCCGTCGCCGCCGATCGGTTGGGCAGCCCGGCCGGCAGCGCGTCGCCGGAGACGACGAGGATGATGAGGGCGCAGAAGCAGCAGCACCAACACCGGCGGCGCATGAGCACCGGCAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACCGAGGATCCCTGANTAGCGCCTAGCTTAATTTCTTTTTCTTCTCTGAATTCACAGTGGTTTTTTTGCCTGGTGTGTAAATTTCCTCTGGTGCCCGGTAAATATTTTTANTCNCCTTTTGTGTTANTGATGTGCCGNTTTTNCATTCTGAAANCNACAACTGTGTATNATTTTCGAANCACAAANCGACTTCCATTCTATCTTCTTGTATCTTCGAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL OSC1051              [GCGCGGGCACCACGTCCGCAGCAAGTCGGAGGGCAGCGCCGTCGCCGCCGATCGGTTGGGCAGCCCGGCCGGCAGCGCGTCGCCGGAGACGACGAGGATGATGAGGGCGCAGAAGCAGCAGCACCAACACCGGCGGCGCATGAGCACCGGCAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACCGAGGATCCCTGANTAGCGCCTAGCTTAATTTCTTTTTCTTCTCTGAATTCACAGTGGTTTTTTTGCCTGGTGTGTAAATTTCCTCTGGTGCCCGGTAAATATTT                                                                                                                                   ]
[+] EMBL AU097541             [                                                                                                                                              AGCACCGGCANCCATGCCTCGCCGTGGCANCCGCACCTCTCGTGCATCACCGAGGANCCCTGAGTANCGCCTAGCTTAANTTCTTTTTCTTCTCTGAANTCACAGTGGTTTTTTTGCCTGGTGTGTAAANTTCCTCTGGTGCCCGGTAAATATTTTTANTCNCCTTTTGTGTTANTGATGTGCCGNTTTTNCATTCTGAAANCNACAACTGTGTATNATTTTCGAANCACAAANCGACTTCCATTCTATCTTCTTGTATCTTCGAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5929#1
GCGCGGGCACCACGTCCGCAGCAAGTCGGAGGGCAGCGCCGTCGCCGCCGATCGGTTGGG
CAGCCCGGCCGGCAGCGCGTCGCCGGAGACGACGAGGATGATGAGGGCGCAGAAGCAGCA
GCACCAACACCGGCGGCGCATGAGCACCGGCAGCCATGCCTCGCCGTGGCAGCCGCACCT
CTCGTGCATCACCGAGGATCCCTGANTAGCGCCTAGCTTAATTTCTTTTTCTTCTCTGAA
TTCACAGTGGTTTTTTTGCCTGGTGTGTAAATTTCCTCTGGTGCCCGGTAAATATTTTTA
NTCNCCTTTTGTGTTANTGATGTGCCGNTTTTNCATTCTGAAANCNACAACTGTGTATNA
TTTTCGAANCACAAANCGACTTCCATTCTATCTTCTTGTATCTTCGAAAAAAAAAAAAAA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5929#0      TCTCTTCGTTTCAATCTAGCGACCGAACGCGAGAAGTCGAGAAGAGAAGCGGCAGCGACA 60
consensus_5929#1      ------------------------------------------------------------
                                                                                  

consensus_5929#0      CCGGCGCCGCCCACCACCACTGCATCGCCGCCGCGGCGTGCCTCACCGGTCCCGCCCCCC 120
consensus_5929#1      ------------------------------------------------------------
                                                                                  

consensus_5929#0      AACAGCTGCGCCGCCGCCTCTCCCCGGTGAGTCTCCTCCCCAGCCGCCGCCTATCCTCAG 180
consensus_5929#1      ------------------------------------------------------------
                                                                                  

consensus_5929#0      CGAAACCCTAGGCACCGAGCCGGCCGCATCGACGCGTACGGCCGTGCTGTGTCCGCCGGT 240
consensus_5929#1      ------------------------------------------------------------
                                                                                  

consensus_5929#0      GAGGTGCTGGCGGCGCACCCCAACCACGTGCTTAGCCGGCAGTGCTCGTCGCAGCAGGGG 300
consensus_5929#1      ------------------------------------------------------------
                                                                                  

consensus_5929#0      GCGATGGGCCGGATACACATCGTGTCGCCGGAGTCGAAGCTGGAGTGCGGCGAGATCTAC 360
consensus_5929#1      ------------------------------------------------------------
                                                                                  

consensus_5929#0      TTCCTCATCCCGGCCGCCTCCGTCCCCGACGCCAAGAGAAGGACGAGCACCGGCGGCGCC 420
consensus_5929#1      ------------------------------------------------------------
                                                                                  

consensus_5929#0      GCAGGCCACGGGCACCACGTCCGCAGCAAGTCGGAGGGCAACGCCGCCGTCGCCGATTGG 480
consensus_5929#1      -----GCGCGGGCACCACGTCCGCAGCAAGTCGGAGGGCAGCGCCGTCGCCGCCGATCGG 55
                            * ******************************** ***** ** ******* **

consensus_5929#0      TTGGGCAGCCAGT---GCAGCGCGTCGCCGGAGACGACAAGGATGATGAGGGTGCAGAAG 537
consensus_5929#1      TTGGGCAGCCCGGCCGGCAGCGCGTCGCCGGAGACGACGAGGATGATGAGGGCGCAGAAG 115
                      ********** *    ********************** ************* *******

consensus_5929#0      CAACACCACCACCAACACCGGCGGCGCATGAGCACCGGGAGCCATGCCTCGCCGTGGCAG 597
consensus_5929#1      CAGCAGCACCA---ACACCGGCGGCGCATGAGCACCGGCAGCCATGCCTCGCCGTGGCAG 172
                      ** ** *****   ************************ *********************

consensus_5929#0      CCGCACCTCTCGTGCATCACTGAGGACCCCTGAGCTTAGCTTTCATTTTTTTTTCTTCTC 657
consensus_5929#1      CCGCACCTCTCGTGCATCACCGAGGATCCCTGANTAGCGCCTA-GCTTAATTTCTTTTTC 231
                      ******************** ***** ******     ** *    **  ***  ** **

consensus_5929#0      TTCTCTGAATTCATAGTGGTTTTTTT---------------------------------- 683
consensus_5929#1      TTCTCTGAATTCACAGTGGTTTTTTTGCCTGGTGTGTAAATTTCCTCTGGTGCCCGGTAA 291
                      ************* ************                                  

consensus_5929#0      ------------------------------------------------------------
consensus_5929#1      ATATTTTTANTCNCCTTTTGTGTTANTGATGTGCCGNTTTTNCATTCTGAAANCNACAAC 351
                                                                                  

consensus_5929#0      ------------------------------------------------------------
consensus_5929#1      TGTGTATNATTTTCGAANCACAAANCGACTTCCATTCTATCTTCTTGTATCTTCGAAAAA 411
                                                                                  

consensus_5929#0      -----------------
consensus_5929#1      AAAAAAAAAAAAAAAAA 428